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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0325200 |
| Transcript ID | LotjaGi6g1v0325200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mg-protoporphyrin IX chelatase; TAIR: AT4G18480.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P93162|CHLI_SOYBN Magnesium-chelatase subunit ChlI, chloroplastic; TrEMBL-Plants: tr|I3SEI5|I3SEI5_LOTJA Mg-protoporphyrin IX chelatase; Found in the gene: LotjaGi6g1v0325200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64062397..64064848) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTGCTGATCTTCCCGACATGTCACCTGCACTTTACCAAGTAATTTAAAGTATTTTCTTTCTGTTAAAAGAAAAAGCG GAAGGAAGGTTAAAGAATTAGAATACCTACACCAATCACTTAAGATTATAAACTATTAATTGAGCCTCACACTATAGGTT TTCACAAAATACTAAGACAATTCTTTTATATTATTTCTATTTGTTTTTCTCTTGTAAAAAAAGTATATTATTTCTATTTA TTATATTCTTGACAAACTACAAACTTAAATTTCAAAACATTATTCCATGCTTTAGAAAGTACAAAAATAGGAAGAAAATG CTAACTCAAATAGATTTTTTAATCAGAAAAATGTTAACTCAACTCAATTAATTTATAATATTTTTTAAAGAACAAGATAG ATTGATATTGGTAGAAGGAGATCTATCATATCCCCTTATCCAGAAAGCCAATAGAAAGCATGCCAGCTGCTATGTCTTAA CAACACCCAACACTTCTCAGTACCTTCTCTACTCCAACCATGGCGTCCACGCTGGGCACGTCTTCATTTGCTGTTCTTCC TTCACGCTGCCTCTCTTCCCCATCTTCCAAGCCTTCCATTCACACTCTCTCACTAACCTCAGGTACAGTGTTTGTGCTTT GCCCTTTGTTTTTTTGGTTATAATTGAGGTTATGCGACAGACCCATTTCATATTTGTTGTTTTTCTGTGATAAAGCTATG TTTTTTCTTATCCTTGAGGAGTTTGTAATTGGAAATGGAAGGTGGGTCCTTGTGGGCATCTTGTGATAGTTAGAATTTAT GCTGAATGGTTGTGGCTTTGCAGGGCAGAGCTGTGGAAGGAAGTTTTATGGAGGTATTGGAATCCATGGCTTAAAGGGAA GGTCTCAGTTTTCAGTTGCTAGTGTTGCCACTGAAGTCAACTCTGTAGAACAGGTAGGTAAGGGATATACCATTTGTAGG CACTTGGTGCACTCCAGGTGTTTGTAGGAATGTTTTATGTTGAGCCATTGAGCACTCATAGTCGTCGTAGTTAATGAGTT TTAAGCAAATTATGGGTTGAAGATACTATCTTAAGATTGTTTTGTTCTAATAAAAGTGGACATACTCATACACTTGCACA TGGACATTTAGAGTGTAGTTGGTTGAAGGAAAGTAGCTAGGGGGAAAACAGTTAGTTCATATTTGAACTTATAATGTGCC AAAATACCTAGATTATTTATTTCATGTGATTCTTAAAGTTCAATATTTTGATCCAGATTTCTTAAAAGGATTTGGGCCAA CTCTGTTAAGTTTTGTGTGTCAAAGATCAATATTGCATTTTGACTTTTTGTGTGTATGTGTGTCTGTGTGGTTTGATAAC CTGCCAAGTGCCAACTCTGTTAAGTTTTCTCATATCCAGGTTCTGAATAAGGTTTCTAAAGAAAGCCAGAGGCCAGTGTA CCCGTTTGCTGCTATAGTTGGACAGGATGAGATGAAACTTTGCCTTCTCCTTAATGTGATTGATCCCAAGATTGGAGGTG TAATGATCATGGGGGACAGGGGAACAGGGAAGTCCACGACTGTTAGGTCTCTGGTTGATTTACTTCCTGAAATCAAGGTT GTTGCTGCTGACCCATATAACTCAGACCCAGAGGATCCAGAATTCATGGGTGTTGAAGTGAGAGAGCGTATAATAAAAGG GGAGCAACTTGATGTTGTCTTGACCAAAATTAACATGGTTGATTTGCCATTGGGAGCTACAGAAGATAGAGTGTGTGGGA CAATTGACATTGAAAAAGCTCTCACTGAGGGTGTCAAGGCATTTGAGCCTGGTTTACTAGCTAAAGCCAATAGGGGAATC CTATATGTTGATGAAGTTAATCTTTTGGATGATCACTTGGTGGATGTGTTGTTGGATTCTGCAGCATCAGGGTGGAACAC AGTGGAGAGAGAGGGTATTTCTATCTCGCATCCTGCGAGGTTTATCCTAATTGGCTCAGGTAACCCTGAAGAAGGGGAGC TCAGGCCACAGCTTCTGGATAGGTTTGGAATGCATGCTCAAGTGGGGACTGTAAGGGATGCTGAGCTCAGAGTGAAGATT GTGGAGGAGAGAGGGAGATTTGACAAGAACCCGAAGGAATTCCGAGAGACTTACAAAGCTGAGCAGCAGAAGCTCACGGA TCAAATCACCGCAGCAAGGAGTGTTCTTTCAGCTGTTCAGATTGATCAAGATCTGAAGGTGAAAATCTCCAAGGTTTGTG CTGAGTTGAATGTGGATGGATTAAGAGGAGACATAGTAACAAACAGAGCTGCCAAAGCTCTAGCTGCTCTCAAGGGAAGA GATAAAGTAAGTGCAGAGGATATTGCTACTGTCATCCCTAACTGCTTGAGACACCGCCTTCGAAAGGATCCCTTGGAGTC AATAGACTCAGGTTTACTAGTCACAGAGAAATTTTATGAAGTTTTCAGCTGA
CDS sequence (LotjaGi6g1v0325200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGAATGGTTGTGGCTTTGCAGGGCAGAGCTGTGGAAGGAAGTTTTATGGAGGTATTGGAATCCATGGCTTAAAGGG AAGGTCTCAGTTTTCAGTTGCTAGTGTTGCCACTGAAGTCAACTCTGTAGAACAGGTTCTGAATAAGGTTTCTAAAGAAA GCCAGAGGCCAGTGTACCCGTTTGCTGCTATAGTTGGACAGGATGAGATGAAACTTTGCCTTCTCCTTAATGTGATTGAT CCCAAGATTGGAGGTGTAATGATCATGGGGGACAGGGGAACAGGGAAGTCCACGACTGTTAGGTCTCTGGTTGATTTACT TCCTGAAATCAAGGTTGTTGCTGCTGACCCATATAACTCAGACCCAGAGGATCCAGAATTCATGGGTGTTGAAGTGAGAG AGCGTATAATAAAAGGGGAGCAACTTGATGTTGTCTTGACCAAAATTAACATGGTTGATTTGCCATTGGGAGCTACAGAA GATAGAGTGTGTGGGACAATTGACATTGAAAAAGCTCTCACTGAGGGTGTCAAGGCATTTGAGCCTGGTTTACTAGCTAA AGCCAATAGGGGAATCCTATATGTTGATGAAGTTAATCTTTTGGATGATCACTTGGTGGATGTGTTGTTGGATTCTGCAG CATCAGGGTGGAACACAGTGGAGAGAGAGGGTATTTCTATCTCGCATCCTGCGAGGTTTATCCTAATTGGCTCAGGTAAC CCTGAAGAAGGGGAGCTCAGGCCACAGCTTCTGGATAGGTTTGGAATGCATGCTCAAGTGGGGACTGTAAGGGATGCTGA GCTCAGAGTGAAGATTGTGGAGGAGAGAGGGAGATTTGACAAGAACCCGAAGGAATTCCGAGAGACTTACAAAGCTGAGC AGCAGAAGCTCACGGATCAAATCACCGCAGCAAGGAGTGTTCTTTCAGCTGTTCAGATTGATCAAGATCTGAAGGTGAAA ATCTCCAAGGTTTGTGCTGAGTTGAATGTGGATGGATTAAGAGGAGACATAGTAACAAACAGAGCTGCCAAAGCTCTAGC TGCTCTCAAGGGAAGAGATAAAGTAAGTGCAGAGGATATTGCTACTGTCATCCCTAACTGCTTGAGACACCGCCTTCGAA AGGATCCCTTGGAGTCAATAGACTCAGGTTTACTAGTCACAGAGAAATTTTATGAAGTTTTCAGCTGA
Protein sequence (LotjaGi6g1v0325200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNGCGFAGQSCGRKFYGGIGIHGLKGRSQFSVASVATEVNSVEQVLNKVSKESQRPVYPFAAIVGQDEMKLCLLLNVID PKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVVAADPYNSDPEDPEFMGVEVRERIIKGEQLDVVLTKINMVDLPLGATE DRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGN PEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERGRFDKNPKEFRETYKAEQQKLTDQITAARSVLSAVQIDQDLKVK ISKVCAELNVDGLRGDIVTNRAAKALAALKGRDKVSAEDIATVIPNCLRHRLRKDPLESIDSGLLVTEKFYEVFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 395 | 388 | 1.8E-249 | – | |
| PANTHER | 8 | 395 | 388 | 1.8E-249 | – | |
| Gene3D | 56 | 261 | 206 | 9.8E-64 | – | |
| SUPERFAMILY | 57 | 391 | 335 | 2.39E-60 | ||
| TIGRFAM | 59 | 394 | 336 | 2.8E-163 | ||
| CDD | 65 | 261 | 197 | 4.05908E-6 | – | |
| SMART | 82 | 264 | 183 | 2.2E-8 | ||
| Pfam | 171 | 241 | 71 | 2.1E-7 | ||
| Gene3D | 306 | 394 | 89 | 6.6E-29 | – | |
| Pfam | 321 | 379 | 59 | 5.2E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Chlorophyll biosynthetic process | The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. | ||
| Molecular function | Magnesium chelatase activity | Catalysis of the reaction: ATP + H(2)O + Mg(2+) + protoporphyrin IX = ADP + 2 H(+) + magnesium protoporphyrin IX + phosphate. |
Expression pattern of LotjaGi6g1v0325200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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