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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0333100 |
| Transcript ID | LotjaGi6g1v0333100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Smr domain-containing protein, putative; TAIR: AT3G15390.1 silencing defective 5; Swiss-Prot: sp|Q9LUQ3|SDE5_ARATH Putative nuclear RNA export factor SDE5; TrEMBL-Plants: tr|I1M254|I1M254_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0333100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64787780..64795487) extracted from Lotus japonicus Gifu genome v1.2.
CACACACACACAACCACTCACACACTCACTCACTTTCTCGTCGCCGCCCCTCCTCCATCCCACTGCTGCGCTTTCATCAG TTACAATAGCCGCACCTTCACGACCAGCTGCAACTCTAGCGCCATATGTGAATCAACCACGTGTGATGTGACTTTCACCT GCGACGATCAGTAGTTTCTCAGGTTTCACTCTCTTTCTGATGTTTTTTTCTAGATCTTGAAACTCCATCCCTATAAATTA GCCTTTACAAACCCTAAATATGGATGTTCCATGAAATTAACAAACCCTAAACTCATAACCCCATGAGATTTCACAAATCT CAAATCTTTAATGAAAATCCTTCAGAGTTGTGGGAGCTTGAAAAAAAATCTCATAATAAATTAAAAAAAATATGGGGAAG AAGAGATTCCTCCTTAGATCGAATAGAGAAGATGCAAATGCGGATGACAAATCGAGGGCATATGCATAATTTCATTCCTA ATTTTTCACATGTATAAGTATATAATAAACTTTCAAATGTACATTAGATAATGCGATTCGTAGCCCTCTTCAATCAACAA ATCACACAAATAACGATAACGATAACTCTTAACTTTAATAATTTATTTGTTATTTAGATTAATCTATTCCATCACTGATT ACAAAATCCTGTCTCACTGGTTTTTAATTGCAAAGATCTTATTTTTTATTTTTAACTTCTGAAAAAAATTGAAAAACTTT AGAGACAAGCTGCTTGTTTTGGACGGGATGACTCAAAAGAAGCTTTCTGAGGAAGAATTCTCTTTTTTTGATTGAGAGAA GCTTGCTGAGGAAGAATTCTCATTGAATATGATTGATTTGTGCATTTAGCAATTTAGCAATAACAATAAAGATCTGTGTA AACCAACATGCAATAGTGTAGACCAATAAACTAAATAGATATTGAAATATTGAAAAGATAAACATAATAATAATATAATA TAATAATGGGTGAAGACTACGGTACATGAATGACTTAGGTGGTGCAACTTACACCATAGTAATATATAATATGATGTGAC TGAAATGAAGATAGTGAGATATCTCAAACTCTATGCAATGTTTAGTGTTACACGTATTATTTATTTAGCAATAATAAGTA AAAATCAATATCCAAAAAATTCTTAGCCAAATATTCTCATTTTTTTATTTTTTGCTTTTTCATTTTTCATTTTTCTTCTC ATTCAATTACTATTTCCAGCTTCACATATATATTGCTAGCTCAGAGCAATAACAGCTTTTGTGGACTTCTCCTCCTTCAA ATTCCACCCTCCACAGTTCTCGCATGCCCAGGTGAGTATTCATTCTTCTTCTCTTCAGTTATTGCCAATGGGTTCAAATT GTGTGAGAAATTTTATTCTGTTGAATTCAAATCTCAGAAACTTACATAGTAACAACGAAACGAGAAAATCGCATCTGGGT CTTTTCTTTTTTTCATACCCCACCTCCCCATTTTCGTAAAGTTTTCACCTTTTGCCATTTTTATTGAGATCGTGTTGGTT TCACTGCCTCACTGGTTACCGTTTGATTGCATTGTTATCTCATCTAGGTGCAGTTTTTTTCCTAACTTTATCTGTTTTTA TTTTTAATTTTTGGAACATGTTTTTCTTTCATGGTTTAGGATTCTGATTCTGAGTTGCTGTCTTGTTTTAAATGATTGTG TGAACATGAATATGTTGATGTTTCATATGTAATTTTTCTCTATGGTTTTCTTTGCATTGAAGAAATGGCACTAACCTTTT ATTTGTCTTGTTTGATACTTTGAGTACTTGAGTCATTCCCCCAAGGCAATGCTCTCTTCACTCTTTTTTCTCTGTCTACT TTCTTTAATTGTTCTTCTGAAATTTGTTTTTTATGATTGGCAATTCAACATTGGATGTAAACACATACAGTAACACATTC TTTAGAAATGCTTTGATTTTCTGTAACAAAAACTTATGCATATGCATAAGTTTAGGATGCCATCATTATATTCCCTGGTA CAATGAATTTTGACTAATTGATAAACTTATCACTATTTTATCTGACAGTGATTCAAATTTCAAATATATTTGGGATGGAA GTCTCTGGGCAAAGTGTGCTCACATATGACGAAGAACAGGCATTGAAGTGCTTGCTTGATGCCTTTGACCCTGCATTTTC TCTGGATGATATAGCTTCTGCCTATTGCAAGGCGAGCCGGAATGCAGACTTGGCTGCGGAAATTTTGAATGAAATGCAGG GAAGCTCCTCCACCTCTGGAACCCAATCATCCAAGACAGATTCCAGAGCTGAAGAGACTTCAGTATCATCTGATGGATAT TTCTCTGAAAATCCCTGCCAAGAGAGGAAAAACGCAAGGCACAAAGCTCGCCCGGTTTCATTAGGTTCTGTCTCAGGGGT TATTGGTAAGGATTATGTTAGACCGATGCCCTCGGCAAATGGGTCTTATGGTGTCACTAAACCAATTAAGTTGGATGCCA AGGAATTCCCGATGACTGGAATCTGGCGTGAAAAAAGCAAGCCAAATACTTTCAAGCGTGATCAGCTTCACAAGGACATG GAAGATTTCTTATTTAAAATGCTTGGAGAGGGCTTTCAGCTTGACAGAAATATGATACGAGAAGTTCTGGGTACATAACC GAAACTTTTTGCTGTTGAAACATTAATGAAGCTATTTTCTTCTCTCACATGTTTGAGATTTCCTTAATTTTTTTAATAAT CTCAACTACATAACTGGAACTTTTTGCCGATGAAACATTATTCAAGCTATTTTCTTCTATCATTTGTTGAGATTTCCGTA ATTTTTTTGTTTAGAATCTCAACTACAATAACAATAATCAGAATTTTTTCCCACTAGATAGGGTTGGATACATGGATGGA ATGGCATTATAATGTCCTATCATGAAGGATGTCTAATAACTAACCATTCAAATTCAACTCTTCTTATTGGGTTATATAGT CTTTTTTTCCTTCCTTTAGCTGTGCTATTTTCCCATCTGGTCTATGTTCTTTGCATGTGTTTCTACCAGTATTTCTACAG GTCTTCTCTAGACATGCCCAAATAATCTGAAACAAAATTATACCATATTTTCTATAACAAGTGCTACCCCAAATGGCCAA ATCCCAAATTACTCTCTGATCTTTTTCGTTCATATTGTTAACTAGTTTTGTGTGACCATTTTATCCATTGTAATATTTTC ATCTCTGCAATATCGAGCTTACTTTCTTGTTGGCTCTCTACGTCCTTTCTATGATATTTTGTGTCATCTTCTCTTTTGAT CATTTCATTATAGAAAACTCATATCTACTAGTCTTTTTTATTCAACTAATCTAATATCAATTTTTTAAATTTTTTATTGA TTGTTTGTAACTGATACATCATTTTTTAATGTAAATTTAGTTATTTTGATCATAATCATGTTGGGCTTGAATATATCATT TTATATAGCTGTTTAACATCATATTTTCTATCTTGGGTGTCAATTTTCGTTATGCTAATAAATCTGGTTTTACTTTGTAT TATCATTTCTTACTATTAGTTATCAAGTATACTGGCTTGACTGTGTGCTAAACAATGCAATCAACTGACAACATTTTGTA ATGCTTCCTATTAATTAATTTCATTATTGAGACAAGTAACTCATAAGCTGAACTATATTATTATTAGCTTTATTTCTTTA GTTTGTATTAACAGCTGCCTGGTTTTGTTGCAAACATGCAGATACTTGCGGGTATAACATGCAGAAGGTACATAATAATT GTTTTATGCAGCCATTGTTGATGTTTTCTAATTCTTATCTCCCCCCTCTGGGATTTGTATGAGGATCTGCAAATTTACTT TTTATTGTATCTATACTGAAATATGATCATTCATGTGGCCCTTACCCAATAGCTTAAGCTTTTGGGATAATTGGTTCTTG GCATATACTTTTATTTAGGGTTCAAACTCATTTACCTTTTCTGGTTTGTCCATAAGATACCTCAACTTTTCTGATTTTCT TAATGAAATACACATACATAATTAGTTTGCATGGGATCCTATTATCCTAATGTCAATTTTGTAATTACATCTCTAACTTG CATTGCATGACATCATAGTGGGGCATTGAAAAATAGCACTTGTGATCTTTGTTGAATATATATATTGTCATCATCCAGAG CTTGGAGAAACTGCTTGATCGATCAGTTGTGGCTGCGGACGAAAGATCAGCTGTTGGGGATTCAGCTGGGAAGGTTAGTT TGAATGCAGCCTATTTGATACTTGAAGCTGCATTAGGATTACTTCTGTTACTTTTTGTTCTGAAAGATGTTTGCCACATG CCAGCCTTTCTGTTGAATGTTGTCAAATGATATACATGAATCATTTTTCGTAACCAATTGTTCACAAAGGGAGGACATAA TTTTTGGTGAAACATATATTTCTGATCCCTTCCCCCGTTAATTTTTTCTTCATTTAGTTTAGGCCATGTCCATTGTTGGT TTTTATTTTTCCCTTGATTATTATCCAATAAAAAATTAGCTTTTGGCTTCCTGTTCTTTTTGTGTTGGCTATGGTTTTGT ATTCTCTATCTTTGTTTTTTACTATCTCCTTTTATGCTGAAAGTTATATCTTGATGTCTCCAATTTCACACTCTGATAGT CATCTAGATTCTTGAATGCATTTTAAGCGAACTGTACTTTCACAGTTTACAGATACAAAACCAAAATCTGAAGAACCTTC GTCCGAAAGAAAGTCTGAGAATTTAAATATCGGACGGTATATTTTTCTTTTTCTTTTTTCCTTTCATTTTTTGTTTATGT TTATATCTACTATATCTGACATTATCTTATTTACTTTTAAAAATAAGGGAGTTCTACTTTATCTTTTGTTTTGATTGGTG TTTTGCTCTAATGGCATAATCAATTCATTTCCATTCCATACTTTGGGTTGTTATGTATATTCTTTTTATCCACAGTAATG AGGAGCTGCAACAGAAAGGGACACACGACCTTCAGAAAGAAGTCCTGTCTTCATTATTTAATTATCATGAGTATTCCGAG GAACCTCCAAGAAGAATTGTAAATCATGTGAATACGAATTCAAGATATGGACATGTGGTTACTGAACCACCCGAAGACTC GATGAAAGAGTACAAGATCGACATGGACTTCTCTCGAAATGTAGAAGGTACTTCCATCCACTTTCCTGGCAAATCCGATT CTCAATCTCGGTTGTCATTTTGATATTCAAGAAAACTTGATTTCCAGTTATTTTTTTGGTTGTTAAACGTTCAGTTATTG AGTTATATGACATTTATTGAGGGAGATGGTGCATTCAGTTTGGAAGGGAAGAATTCTCTCTGTAAGAGTTAGAGTAGCTT CTTTCCTCACCGATTTATAACATGCGCACCCTATTATACTCTGGATCTCTATCACAACTAGCTGATTCACATGCTGCTCT CACTCTGCCAATTATTTGAATATTTGCTGTTTTAATTAGAACAAGTACTTCATACATCCCTATCGTGGAGAAGCTGATGG AAAATCGGTTAGGTATTATAGACGTGAACAAAGAAGACCTCTGCAGCACTAGTAAGAAGGGTAGATAATATGGTCTTTAG TCCTGTGAAGAGGGATAGAGGGAGACCAAAAATACATTTGAAGATATTTGTAAAAGTGACCTCATTATCAATAATATCTC TCAAAATCTGGTTTTTTTTTATCAAGCTCAATGGCGTAGTGTGATCCATATAGCCGACCTCACTTAGTGGGACAAAGCTT TTGTTGTTGTTTTTTATTTTCTCCCTTTGAAGTTGAGTTTTACTTTGTATAATATTAGTTCTGCGCATTGCAGATGCGGA GGACGAGGAGGAGTACCAAAGTTTGCGTAGAGCTGTGAAGGAGTATCGAGCGACAATGAATGAATATTACAAAGCAGTAT GTTGCATTCTTTTTTCCAGCATAACAGGGGTTATATTTTTGTCCCACATTTGATTTTTAAATAGTTTGGGGTTATTTGCT TTGTACACTATAAAGTACACTCATGGATCACTTGTCACTTCAGGCAGTTGATGCATTTGCCAAGGGGGATCAGACTAAAG CAGAAAAACTCTTAGCTGAGGTATTGTTTTTATAGATTGTCCCTGGCAATAAGTTTCTTAGTGATACGATAAACGTTGAC TTTTTTTAGAAGTTGTGAATTTCCAGTTCATTGATATAATGGGTTCTTGTGTGCTATTAGTGCTGGTTTTCTTTTCGTTT TTTTTCCTTGCCTGCTTGTAGCTGTGTTCATGTTTCATTCACTCTTTTTTACTAATACTGTATCATAAATGGATACTCCT TTCAGCATCTAGGGTTAGTTTCCATTATTTCAGAAAATATGTGTTTAGTCTTAACTTAGCAAACTTACAATTATCCTGGT TAATCAAATTTTGTCATTTCACTGGCGTATGCCATGACAGGGAAATTTTTTTCTCCAAAAGGTTCGTGATGCAGATGAAG AGTCTAGCAGAATGATTCTCGGAACTAGGTTAATATCTTCTGCTCTAAAACTTGCGTTGCTTCACTTTTTGTTTCCTAGC ATGGGAAGTTTTGTATGATAGATAATACAATATTTCTTTTGTTGTATTTGTTGGCAGCACTGAAGAGGACCAAGAAATGG TGCTTGACTTGCAAGACCATGGTGCAAAGGAAGCTAAGCGTCTGCTTAAGAGTCATCTTTCTTCTCTTTCTGGCATTCCA TGTAAGTTTTGGAATTGAACTATACTAATCAGTATAAATTCTTTATACCTTTTCAATTTTCCTTCTGTTTTCAATGGTAA TTTGAATGTTCCTCTATCTCCTCCATCAGCATTTGAGTACCTCAAGGTTATCATTGATGCGAATGATCAAGAAAAAACCA AACAGTCTCGCAGGAGACTAGTGGTAAGATTGATTGATTTCTTGAAGTTCAACTTGCTATATATTTATGTTTGAATTTGC ATGGCTGTTGTTGTGACAATTTGTGACGTAGTAGTCTTTGATTTTTTACAGATACTAAAACTATTAGAGGAGGAATCCAT AAAGTGGGTTGAAGGGGAAACAGCGGGTACAATATTGATCCGGTTGCAAAGCATAGAGCGGAAACGTTTGAGTTTTTTCA AAACATAGATAGCAGTAATCAATATGCCATCTGTGACGAGCTATCGAATGAAAATTGGAATTAAGGTTGTCTTTGGCCCT ATGGAGTAATTCACCCAATTTTTGGAACATTTTTTGAAATATGAGGAACCAAATCAAAAGATATCCTTTTTGGGTTTGCT AGGTACATGTCATTTTTTCTTCTAAGCATTGATAGCATGCGGGTAAAATGCAAATTTTGTTCACTTGCAACTACAGATTA TGAGGTTTTGACGCTTCAGTTGAGCTGATATGAATGATTCAACTCAAAATTGCTTTTACAGTTAGTATATTATAAAACAC TTACAAGGTGTGGTGTAGTAATTAACTCACTTTGTCGCTTAACCATGAGGTCGGGGTTCGATCTTCGCCTATGAAAATGC AGCGCATATTGTGATCAATCATTTACTGCTTAGTGTGAGCACCAATGGCGAAGAGATTAGTCATTGTTGTCAGCCGTGGA TAAACTCTTATTTCAATAAAAGGTTTTTAAAACGATTATTGTTTGAAGTGCTTTATGTACCAAAAAAAAGCCTTTATTAA AATTGTATTTTGAATAAAAAATTAAGCC
CDS sequence (LotjaGi6g1v0333100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGTCTCTGGGCAAAGTGTGCTCACATATGACGAAGAACAGGCATTGAAGTGCTTGCTTGATGCCTTTGACCCTGC ATTTTCTCTGGATGATATAGCTTCTGCCTATTGCAAGGCGAGCCGGAATGCAGACTTGGCTGCGGAAATTTTGAATGAAA TGCAGGGAAGCTCCTCCACCTCTGGAACCCAATCATCCAAGACAGATTCCAGAGCTGAAGAGACTTCAGTATCATCTGAT GGATATTTCTCTGAAAATCCCTGCCAAGAGAGGAAAAACGCAAGGCACAAAGCTCGCCCGGTTTCATTAGGTTCTGTCTC AGGGGTTATTGGTAAGGATTATGTTAGACCGATGCCCTCGGCAAATGGGTCTTATGGTGTCACTAAACCAATTAAGTTGG ATGCCAAGGAATTCCCGATGACTGGAATCTGGCGTGAAAAAAGCAAGCCAAATACTTTCAAGCGTGATCAGCTTCACAAG GACATGGAAGATTTCTTATTTAAAATGCTTGGAGAGGGCTTTCAGCTTGACAGAAATATGATACGAGAAGTTCTGGATAC TTGCGGGTATAACATGCAGAAGAGCTTGGAGAAACTGCTTGATCGATCAGTTGTGGCTGCGGACGAAAGATCAGCTGTTG GGGATTCAGCTGGGAAGTTTACAGATACAAAACCAAAATCTGAAGAACCTTCGTCCGAAAGAAAGTCTGAGAATTTAAAT ATCGGACGTAATGAGGAGCTGCAACAGAAAGGGACACACGACCTTCAGAAAGAAGTCCTGTCTTCATTATTTAATTATCA TGAGTATTCCGAGGAACCTCCAAGAAGAATTGTAAATCATGTGAATACGAATTCAAGATATGGACATGTGGTTACTGAAC CACCCGAAGACTCGATGAAAGAGTACAAGATCGACATGGACTTCTCTCGAAATGTAGAAGATGCGGAGGACGAGGAGGAG TACCAAAGTTTGCGTAGAGCTGTGAAGGAGTATCGAGCGACAATGAATGAATATTACAAAGCAGCAGTTGATGCATTTGC CAAGGGGGATCAGACTAAAGCAGAAAAACTCTTAGCTGAGGGAAATTTTTTTCTCCAAAAGGTTCGTGATGCAGATGAAG AGTCTAGCAGAATGATTCTCGGAACTAGCACTGAAGAGGACCAAGAAATGGTGCTTGACTTGCAAGACCATGGTGCAAAG GAAGCTAAGCGTCTGCTTAAGAGTCATCTTTCTTCTCTTTCTGGCATTCCATCATTTGAGTACCTCAAGGTTATCATTGA TGCGAATGATCAAGAAAAAACCAAACAGTCTCGCAGGAGACTAGTGATACTAAAACTATTAGAGGAGGAATCCATAAAGT GGGTTGAAGGGGAAACAGCGGGTACAATATTGATCCGGTTGCAAAGCATAGAGCGGAAACGTTTGAGTTTTTTCAAAACA TAG
Protein sequence (LotjaGi6g1v0333100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVSGQSVLTYDEEQALKCLLDAFDPAFSLDDIASAYCKASRNADLAAEILNEMQGSSSTSGTQSSKTDSRAEETSVSSD GYFSENPCQERKNARHKARPVSLGSVSGVIGKDYVRPMPSANGSYGVTKPIKLDAKEFPMTGIWREKSKPNTFKRDQLHK DMEDFLFKMLGEGFQLDRNMIREVLDTCGYNMQKSLEKLLDRSVVAADERSAVGDSAGKFTDTKPKSEEPSSERKSENLN IGRNEELQQKGTHDLQKEVLSSLFNYHEYSEEPPRRIVNHVNTNSRYGHVVTEPPEDSMKEYKIDMDFSRNVEDAEDEEE YQSLRRAVKEYRATMNEYYKAAVDAFAKGDQTKAEKLLAEGNFFLQKVRDADEESSRMILGTSTEEDQEMVLDLQDHGAK EAKRLLKSHLSSLSGIPSFEYLKVIIDANDQEKTKQSRRRLVILKLLEEESIKWVEGETAGTILIRLQSIERKRLSFFKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 479 | 479 | 2.4E-172 | – | |
| PANTHER | 1 | 479 | 479 | 2.4E-172 | – | |
| MobiDBLite | 54 | 86 | 33 | - | – | |
| MobiDBLite | 54 | 99 | 46 | - | – | |
| ProSiteProfiles | 159 | 202 | 44 | 9.053 | ||
| MobiDBLite | 211 | 253 | 43 | - | – | |
| MobiDBLite | 221 | 253 | 33 | - | – | |
| SMART | 320 | 385 | 66 | 3.7E-10 | ||
| Coils | 321 | 341 | 21 | - | – | |
| Pfam | 321 | 380 | 60 | 4.0E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0333100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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