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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0333500 |
| Transcript ID | LotjaGi6g1v0333500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger protein; TAIR: AT3G47160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|I3T0X1|I3T0X1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64824024..64826370) extracted from Lotus japonicus Gifu genome v1.2.
AATGATATCTTTTCTTCCTTGTCTCAGCCATTCTCATTACTTATATCAGTATATGAGTATCAATCATCATGCAATTGGGT GTGCAGGGCCTCGGATTTTCCGAGGGAATATGATGGTGCGTGCCTTCAGATGAGAATGTCATACAGTCCAGCAGCACGCC TGTTTCTTTTTTTGGTGCAATGGACAGACTGCAATCTTGCCGGAGCTCTTGGACTGTTGAGAATCCTAATTTACAAGGTA AGGCGTTTTGGTTTTTGAATGTTCATTTTGAACTGAGAAATTTTGTCAAGGTGTCAAAATTTCCCTCATGCTGCAGGTGT ATGTGGACGGGACAACTACCATGTCTGTCCATGAAAGAAAAGCAAGTATTAGGGAATTCTATGGTATATCTTCCTTATCT TCCTTTTTTTATTATAATAAATTAGTTTGCATTTAGTCTATGTGAATTGCTAATGTACTGAATTTCTGTATTGTTCAGGG TTCATATATCCCTCTTTATTGCAACTTCAAAAGGGTGTCACTGATACAGAGGATAAAAAACAGAAGGCTGTTTGCATGGA AAGGTATCGAAGAAGAGATGATGAGGAGGATAGACAGTCTTCAGACATAGACATTGAAAGAGAAGAAGAATGTGGAATAT GCATGGAAATGAATAGTAAGATTGTTTTGCCAGACTGCAACCACGCCATGTGCCTGAAATGTTACCATGAATGGTACTTT AGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACTCCTTATTTTAT AATCATGACTTGTTGAAATTAGGAAGTATGAGATTTTTGGGTTTTCATAGGTTCTGATTGGCTCAGTTTGGTTGAATCAT AATTGTTCATAACCATGTAAAGTAAGAGGCATTCTGTTATGATTTATGAGTGATTTTGCAAGTAGTGCAGGCTGTGCAGC GGTTATCAGTCTCACCATAAATGACCTGGTTTCGATAGGTCCTTATCATGTGTCCGGATCTGACACTGATATATGTACAA TAATATACTTGCATTATATGAATGCTGCTTTCAAAGTACTTCCCCCCCTGAAAATTATTATATAGGGACTATGGTGAGGG AAATGCACGAATGATTATGTTTACTACTCACCTAACTCCATTTTTCAAGAATGATCAAGTGCTCAAAGATTATCTAATTA CTAATAATGAATCATTACAAACATAAGTAGGAAAATAAGGACAGCCAGCTGTTATAAAGCTCCCACCATGGTGCAGTCCA GGGAAGGGTTGGACCTATTGTGGATCTATTGTAGGCAGCCTTACTTGCATTTTTGCAAGAGGCCGATTCAATGACATGAA CTTATGACCCCCAGTCACTCAGCACTCAGCAGCAACTCCAACTGCTGCATCAAGGCTCCCCTTAAAAGATTATTCAACAA TCATTCAAGTTGTATTTATAAGACATAAAATAATATATTGTGTGGGACTGTGGGTAATATTTGATGTGATTTTGTTCCCT ACATATCTAGGTCAGTAGTTTTGAATTGTGTGGTCTAGTGGTGATCATTGCTATTTAGACATGAGGAAGGAGTAACAATA AGGGCTCTTATTAACTTGGAGAAATGAAACAGCTTCTTATGCTGTACCAGTATTGTATTGCAATGATCAGAGAAGTATAA ATATGTTGCTATTTTTCTTGTGGAACTATTATGGGATATCCAACCAGATTCTAGAACTAGATTTCTCAGCCAAAGCGAGT TGAAAGAAAATATTCACATTGTTACTTGCTTATGAGAATAGGACAATAGCTTCGGATAAGCTAATAATCTTTTTGGATTC TGTGAACTTGCCAAGCATACTTGTTGGCATCAGGGTTTATTTGTAGATTAATGCTTTAATTGGAACTTAATGGTTTAATT AGAATTGATCAGAAGTATACGCTATAAAGATTAGACTATGAAGGTTGCTTTTTAGGCTTTTTAGGCTTTATGATTGTTAT ATGATTCTAATTTAACTTGTATGATATATCTGATGTATTGTTTGGTGTTCTCATTATTCCTGCACCATGTCTCAGTATAT GAAATTGTGTTCGCCTGTTTAGTTGAAAGCTATTTGTAACTTGACATGTTTTGCAGGAGAACAAGATCACAGTCATGCCC CTTTTGCCGAGACAGTCTTGAGAGTGTGAACTCAGGTGATCTGTGGGTATTAACTGATAGTAGGGATGTGGTAGACATGG CAACAGTGACAAGGGAGAATATTAGAAGACTTTTCATGTACATAGATAAGTTGCCTCTGATCATTCCAGATTCCCTTTTT GATACATATGACTCTCACCTAAGATAA
CDS sequence (LotjaGi6g1v0333500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAATGTCATACAGTCCAGCAGCACGCCTGTTTCTTTTTTTGGTGCAATGGACAGACTGCAATCTTGCCGGAGCTCT TGGACTGTTGAGAATCCTAATTTACAAGGTGTATGTGGACGGGACAACTACCATGTCTGTCCATGAAAGAAAAGCAAGTA TTAGGGAATTCTATGGGTTCATATATCCCTCTTTATTGCAACTTCAAAAGGGTGTCACTGATACAGAGGATAAAAAACAG AAGGCTGTTTGCATGGAAAGGTATCGAAGAAGAGATGATGAGGAGGATAGACAGTCTTCAGACATAGACATTGAAAGAGA AGAAGAATGTGGAATATGCATGGAAATGAATAGTAAGATTGTTTTGCCAGACTGCAACCACGCCATGTGCCTGAAATGTT ACCATGAATGGAGAACAAGATCACAGTCATGCCCCTTTTGCCGAGACAGTCTTGAGAGTGTGAACTCAGGTGATCTGTGG GTATTAACTGATAGTAGGGATGTGGTAGACATGGCAACAGTGACAAGGGAGAATATTAGAAGACTTTTCATGTACATAGA TAAGTTGCCTCTGATCATTCCAGATTCCCTTTTTGATACATATGACTCTCACCTAAGATAA
Protein sequence (LotjaGi6g1v0333500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRMSYSPAARLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSVHERKASIREFYGFIYPSLLQLQKGVTDTEDKKQ KAVCMERYRRRDDEEDRQSSDIDIEREEECGICMEMNSKIVLPDCNHAMCLKCYHEWRTRSQSCPFCRDSLESVNSGDLW VLTDSRDVVDMATVTRENIRRLFMYIDKLPLIIPDSLFDTYDSHLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 206 | 206 | 2.9E-114 | – | |
| Phobius | 1 | 10 | 10 | - | – | |
| PANTHER | 1 | 206 | 206 | 2.9E-114 | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 11 | 18 | 8 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 19 | 26 | 8 | - | – | |
| Phobius | 27 | 206 | 180 | - | – | |
| Gene3D | 87 | 179 | 93 | 5.0E-14 | ||
| SUPERFAMILY | 104 | 155 | 52 | 1.44E-12 | – | |
| Pfam | 107 | 153 | 47 | 7.1E-10 | – | |
| ProSiteProfiles | 110 | 148 | 39 | 12.076 | ||
| SMART | 110 | 147 | 38 | 4.0E-6 | ||
| ProSitePatterns | 125 | 134 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0333500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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