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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0336000 |
| Transcript ID | LotjaGi6g1v0336000.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine--tRNA ligase alpha subunit; TAIR: AT3G58140.1 phenylalanyl-tRNA synthetase class IIc family protein; Swiss-Prot: sp|Q94K73|SYFM_ARATH Phenylalanine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7MVE7|K7MVE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0336000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65048955..65056122) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAACGGTTATCTCGTCAGTGCACACCACACTGTTTGCCAGAGCCTCTCGCTTCCGTCACAGTAATGGCCTAAGAAG CTTAACATTTTGTTTACCTTTCTCATCTTCCGCTGCTTCTGTATCTACTGATAACCTTTCGCGGAAGAAATGGAGGCAGC CGGTTGTCTCAGTTTTGGATCTTGGAGGAGTCAAGATTAGCAGAGAAGGTATTTTGGCTGTTGCTTGTGGTTTTGTATTT TTGTTGGTTGACCTTATTTTTTCACTTACATCTGAATTATACTTTCTTGTCAATGGTATTTGAATTTATATCACATATTT TGATCTACAAAGTGAGCTTTAAAACTCAGGTTTGCATGTCTTAGAAGTTGAGTTAGGCCTAACTCTACCCTAAAAGCTAA TTTTGAGGTGAATGGTGAGGGTTGCTCTACCCTCTAGTCAATGTGAGACTTCTCAAGTCACAACACACCTTACGCCCAGC GCTGAACATTTGGAGCGTGACATTTGCAGGAATCAACATCTGCGAGTGGCCATATATGGGTGGTTTCCAATAAATTGATC TAGGATAGACTTTCATACCATCTTAGAATTTGGGTTACGCCTGACTCTACCCTAAAAGCTAGCATAGAGGTGAGGGTTGT TCTACCCTTTATAATCACTTATTTGGCCATATTTCTAGTCAATGTGAGACTTCTCAACAGTATGCACTAAAAGATTCCAA TTTCTGTTTTCCCCATAGTTTTGAATCATTTGCAACTGACAAATGTCTGTTACAACCACAAATTGTGTTAATCCTTAAAG TAAATATCCATGACTTTGACCCCTTTGCTTACTTTGTGCAAGTGAATGGCATTGAAGTTATTTTATTGAAGTTCACATTT GGATGTAATTGTCATGGTTAAAGTGTTTGGGATGTTATGAGCATAGTAAGACACTATGAATTGCTTTATTCGTTCTACTT TTCTTACTGTGTATGTGCCTTTATGTTTGCTGTTTTGCTTCATGTTAATGTTTTATTTTAAACTGTTATTTGGTTCATCA AATTCTTATTATTTTTGCTCCATGGTCTCCTAGATGTAGTGAGGGACGATCCAACAAATAATGTGCCGGACAATATATTT ACAAAACTTGGAATGCAGCTTCATAGGAGGGATCAACACCCTCTTGGGATCCTGAAGAATGCAATATATGAGTATTTTGA CACAAATTATTCAAATAAGTTCAATAAGTTCGATGATCTTTGTCCTCTTGTTTCAGTGAAGCAGGTATGGCAAAATGTGT TGAAGAATTAGTTTCCCTTAGCTTCTATATGATCCAATATTAGCAACTATTGTTATATGTCGCATATGTTTATACTCTGT TTGCTACTTCTATCCTTCTAGATTTGTGCTGATTGTTATAATGAGTATTGCATGCATTTGAAGCACCTTATTTGTCATGG ATGTTATTTGAGAAAATTGCACAATGATTTTCATCTGCAGGTGTAATTTCTGCTCTCTTTTTTTCAATATTCTGTATAAA CTTTTTAGTTTAAAACCTTACAAAGCCATTAAAAATAAGTGATATTAATGTTTTCATGAATTTATTTCATGTATTTCATA CGTTTACCCCAGTGATATTATAATTTGATTTCTTTGACCCATAGTTATCGATCGCGGCAAATCGCGGCGCTATCGCGCCG TCGCGTCGCGTCGCGGCCGCTCGCCGCGATTCTGAAGCCATCGCGTCGCGGAACGCCGTCGCGGCTGTCGCGCCGCAAAT CGCGGCAAGATCGCGGCCTTATCGCGTGAGATCGCGGCGCCACAAGAAGAAGATAAGGTACAGATGTGGAAAAACCTAAA TTGCCCTTGAAATTTTATAATTAGGTTAAACTTTGAGGGCAATTTTGGGATTTCGCACATAAATAAATGAAACGCGCGTT TCATCTCTCCCTATTCATCTTCTTCTTCAGCTTCTTCTTCAGCGACAGAACCCATGGCCACTGCGATCTTCTTCAGCCAC CTTCCACCTTCGATCAGCACCCATGGCCACCGCCGACCTCCGACAAGCATCGTCCAACTTCCGACGAACGCTGTGAGGTG ACTTTCAGCCAATCTCCGGCGACCACTGCCCTTGGGCCTCTGTTCTGCTCTGTTTTTTTTTATTTTTCTTTCCTTTCTTT TCCTCTTAATTTTCTATTCTCAATCAATTCATTTTGTTACCAGTTCTCTCGCATGGCATCCTCTTCCTCCTCTCTTCTCT ATCATCTCATCTGTTTGTTCTAGATTTTAAGTTATATTTATCATTTTTTTAGTTATTATATGTATATACTATTATACTAT TAATTATATAAAATTATATATGAAAAATCAAAATAGCGGCCATCCCGCTATGCGCTATCCCGCTATCCCACTTTTGGGGT CGGCCGCTACGCGCCGCTATCCGGGATTGACTACTATGCTTTGACCTGAACATGTAAAGTTGATAAGTTATAAAAACAAT ACTTTTACTTTGGGATTTAAGGGATGGTATAAGTATAGGAGATTAATTGATTGACCCAATATTTTTTCCTGATTTTAATC CAAGGCTTGGGTTAAAACTTGTTTCGATTTCTGTTCGGGTGCCTTCTTGGTGGCTTTTGATCAAATGGTGTCATTCTTCA GTCTATTGGTGCTGATTTTAATGAAATGATTTCATTCTTCAGTCTTTTCTTTTATATGAGTTGCTTTTCATCAAGTGACT TCTTTGGTCCTCTCCTTTCCGAAAGTTGAGTAAAACAAAAGAAAAAGGGAAAAATATTTTATGTTATTAAAAAGGGATGA TTATAGTTTGTGCACGATACATATATTAAAAGGAACTCTATCAGTGATAGCATCTCAATAACTGTTGATTTCTAACAATA ATACAAATAAAACTCGATATGATTGATAAAGTATTATTTTTGTTGTAACAACACATCAACAAAATATTTTGTTATGCATT AACTAGATTTAGCTGGTAGAAGTTTATGTTTCACAATCTTAAAAACTAGTATGATTGATTATTGAAACCTGAGGTATGAA TACTACTATGTTTTGCTGGTGTTACATTTTCGACATTATAAGTGGAGTGAGTCTGTGAATGTGTCTCTGAAGCTCTGCTA ACCTGTAACGATTGTTGTGATCCCTTTCATTTTTTTGATTTATTAGTCTTGCATATTGCATCCTTTTTGTTGATAAGGTA GTTTAAACTTCACAATAGGGCTTCTTTCTGATAATCTTCATGCTGCAGAATTTTGATGATGTCTTGGTTCCTGAAGACCA TGTCAGCAGGAGCTATAATGATACATACTATGTAGACCCTCAAACTGTTTTAAGGTGCCACACAAGTGCTCATCAGGCAG AATTATTGAAAAATGGAAATACCCATTTTCTTGTCACAGGAGATGTTTATCGAAGGGATTCAATTGATTCTACTCATTAT CCTGTCTTTCATCAGGTATGCCCCTATGCAGTAACTAATGTTTTCTACTGATTAACTTTATGTAATTTCCTTTGTTTTAT TATGCAGATGGAAGGTTTTCGGGTTTTTGTTCCGGATGAATGGGAAGCATCTGGGATGGATGGCACATCATTTGCCGCAG CAGACCTAAAGAAATGCCTTGAGGGTCTAGCATGCCATTTATTTGGTATTTCCAATTGCCAACATACACGTCTTTATCAG TTGCTGCAATTTAATAATTTAATGGTCTTGAGTTCAATTGTGGAAACATCCTTTCTGCTTACAAGGGTAAAGCTGCATAC ATCTAACCTTCCCCTGACCGTAAAATGGTGGGAGCCTCAATGCCTCATGTACTAGGCTACCTTTCTATATAACAGTGTAG TTGTTGCTAAGTAAATAATAAAAAGACACAATTGTATACAAGACAATATCAACAATCATGCACATATGATAGAAAAAAGG CCTCTTTATGCATATCAAGCAATGTTCACAGGTTAAAAGAAAATTATGAAATGGAAATTATCATTGCATAATTCTTGAGT ATAAAAACCTGTAAGTAGGAAAGTGGAGAACTGGACATTATATGTACTTTGTGGTGATCGTCTCATTGTAATGCTTAAAT GGTTTCTTTACTCAAGTTGTCTAGTTATGAATTTGAGATATTCTTCTGGAACAAAGTATAATGTCCAAGATGTGGATATT CTTTTCTATTTATAATCTTTTGCATTGTACTTTAGGTGCTGTGGAAATGCGTTGGGTGGATACCTATTTTCCGTTTACTA ATCCATCATTTGAGCTTGAAATATATTTCAAGGTATACTATGTTCATTATTGTTTCTTAAATGAAACATGTTCTCATAGT TCCTGTCACTGGTTTTTCCATGTTCTATTATTGTCATTCTATTTTAGTGAAATTAAGTAATGTTTTATATATCATTTATT TCAGGAGAAGTGGATGGAGGTTTTGGGGTGTGGAGTGACAGAGCAAGAGATTTTGAAAAGAAATGGGAAACCTAATAATG TTGCTTGGGCTTTCGGCCTAGGGTTGGAGAGATTAGCTATGGTTCTTTTTGACATACCAGACATCCGTCTCTTTTGGTCA AATGATGAGAGATTTACCTCTCAGGTATTTCGTGGATATGTTTAACAAACACCTTCAATAATTTGTCGCTTTTTCCTGGT TGGCAAGATGTTATTATATGGAACTATGGAAGTATGATTTAATCATCTTGAGAATCAAAGTGTTATGCCATAAGTTTCAT TCTTTTCTGATCTCTTATGTCTGATATGTGTTTTCTTAATTATTTTATTTACAGTTCTCCAAGGGTCAGTTGGGAGTTAA ATTTAAGCCATTTTCAAAGGTAACTTCTACATGTGCTTCTATGTGTCTACCCATGGGTTTCTACATTCATTGTCATTGCA CTGAGTTGTTCATGGTTAGGAATATCTTTTATTCTTTAGAATATTTACTACAATTTAAAACTGCATATAAATGATCCATG ATTGTGAAACTTAAGATAGTCCACACAATTTGTTATGCAAAACTCTTCATATTTTTCATGTTGTTTTAGTGAGTTTTTTC TGTCTACATAGCAAGTTACGCTCTCTAAACTTAGAGATATTTATGCCCATGGATTTGATACTTCACTATGTTAAAGTCCT TGTCACGATCTAGTTCAGAATTTCAGATACCATAGTTATTTTAAACTAATAAATTTATATTATATTATCTGCATTTTGGT TTCATTCTTGTCAAATGATACTCATCTACTAATATGTAATGCCGAAGCAAAGGGCATGTAACTAAGCAATCTTACTAGCC CTTTTTTATGCACAGTCCTTGTGGGATTGTGTTCCTATGTCTGACTGTCTTGTTATTAACCATGGGGAGTTTATGTTAAC TTTATAATTTATATTCTTCTCTCTGCTTTGCAGTTTCCTCCCTGTTACAAGGACATCAGTTTCTGGATCAATGAATCATT TACTGAAAACAATCTGTGTGAAGTTGTCAGAGGAATAGCCGGGGATCTTGCAGAGGAGGTACATGATACACATTTGATTA ATTTGAGCATAATTTTCTCTGGCATATTAATTATATTTCTGTAAGTTCTCAAATTAGCTGCTTTCATGATGTTCAATGGA AACTTTATGCATGATTCGGGACTATGGATTGGGGTGACAATATTCTCAGACGCTGCAGCTTTGGTTTCTTTAATATTTCA AAAAAAAAAGCTTTGGTTTCTTTAAAAATCATACAAGCATCAAACACAAATTATAAACCTACTAGAATAATTCAACCAGT AGTATAAGTCATCATTTGCCAACAGTATTCTTATCCGCCTAAATTTAATTGGTAAAAGCAAACCTCGGGAATAAGTTGCT AAACTAAACAAAAGACTAAAACTAGCCTTTGCAACTTGATCTTGATGGAAAATAACATATATCTTGATGAATTGTAAATA GGCGTGCTTGATCTCATTGATCTGTAAAATACATTCCTATCATCTCAAATGAAGCGATCAAATTCTTGAGTTAGCAGCAA TTGTTGTTTGTAGACTAGTGTTTTTAGAGGCTTTGATACCTTGTTTGCAAATAGCTCCTTGTGCCTAATAAATTTGTGGA GAAATAGTTTTTGGCTGCTTGATCTCATAATAGAATATAAAACTCCTGAGTCTCTTATTTGAATAATTAAAATTGGCTTC AAACTTACATTTCAGTATGGTACATTGGTACATCATAAAGAACTTAGACTAGAAAATTTTGGGAGTAAGGGCGGTTGTTT AGCAGGAAACTATTTAATATATTTCTCTCTGCTATTGCTAGTGTTCTTTCTGTGCTTAATTTAGAGCAAGTTGTGGTAGT AAGATATGGATGCAGCCATGTAGAAAGAGAATATTGTTTTAGTAAAGAATGGGAATGGTTTGGACTTGAGTTTATATTAA ATAAGACAGGGGTAGTCTCCTCAAAGTTAATGTATAATACGGTATTACGGTATAGTGAAGCTAATGTGCATAGTATCTTC CATGTACAATATTAACATACTTCCTCTAGTTGGAGCACCATAGATGTTGCATGCAACAAGTTTGCTCTGATAGCTTCAAT CTGGGTTATCTGAGATGAATAGTAATTATGCCTGCTAGTTGGTCATTTGAGTTAGCAATGCACCCTGAAAGGATTGTAAG TGGCAGAAATTCGATGAGTTTGGTCCTCTCATTATTTAAAGTGATTAGAGACTGCATGCATGGCAGCTTGACTATCAAAA AGTAGCTTCATTCATCAAGGCCATAGTTTGAATTTGTCTAGCAGGGATTTTTTGCTCTTTCTCTTTCAAGAGATGATGTT GCCTCCAATCAGAATGCAATATCATAGAGCATCTCTTTGTAGTAGAATTTCTCCCATCAGCATTACCATAACCAGTCCCC TGTTTCTTGAAATCACAGGTGCAACTAATAGACAATTTCACCAACAAGAAAGGAATGACCAGCCACTGCTACAGGATTGC ATATAGGTCCATGGAACGTTCTCTAACTGATGATGAAATTAATGATCTGCAGGTATTAAATATAATTATAAATATCGGAC ACAAGTCTTGGTTTGAAGTTGTCATATTTTGTTTCCTAAGCTAGAACATAGTAACATTATTTTCCTTGTCAATGCAGTGG AAAGTAAGAGAACAGGTGCAGAGCAAATTGGAAGTTGTCATAAGATGA
CDS sequence (LotjaGi6g1v0336000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACGGTTATCTCGTCAGTGCACACCACACTGTTTGCCAGAGCCTCTCGCTTCCGTCACAGTAATGGCCTAAGAAG CTTAACATTTTGTTTACCTTTCTCATCTTCCGCTGCTTCTGTATCTACTGATAACCTTTCGCGGAAGAAATGGAGGCAGC CGGTTGTCTCAGTTTTGGATCTTGGAGGAGTCAAGATTAGCAGAGAAGTAATGAGGGACGATCCAACAAATAATGTGCCG GACAATATATTTACAAAACTTGGAATGCAGCTTCATAGGAGGGATCAACACCCTCTTGGGATCCTGAAGAATGCAATATA TGAGTATTTTGACACAAATTATTCAAATAAGTTCAATAAGTTCGATGATCTTTGTCCTCTTGTTTCAGTGAAGCAGAATT TTGATGATGTCTTGGTTCCTGAAGACCATGTCAGCAGGAGCTATAATGATACATACTATGTAGACCCTCAAACTGTTTTA AGGTGCCACACAAGTGCTCATCAGGCAGAATTATTGAAAAATGGAAATACCCATTTTCTTGTCACAGGAGATGTTTATCG AAGGGATTCAATTGATTCTACTCATTATCCTGTCTTTCATCAGATGGAAGGTTTTCGGGTTTTTGTTCCGGATGAATGGG AAGCATCTGGGATGGATGGCACATCATTTGCCGCAGCAGACCTAAAGAAATGCCTTGAGGGTCTAGCATGCCATTTATTT GGTGCTGTGGAAATGCGTTGGGTGGATACCTATTTTCCGTTTACTAATCCATCATTTGAGCTTGAAATATATTTCAAGGA GAAGTGGATGGAGGTTTTGGGGTGTGGAGTGACAGAGCAAGAGATTTTGAAAAGAAATGGGAAACCTAATAATGTTGCTT GGGCTTTCGGCCTAGGGTTGGAGAGATTAGCTATGGTTCTTTTTGACATACCAGACATCCGTCTCTTTTGGTCAAATGAT GAGAGATTTACCTCTCAGTTCTCCAAGGGTCAGTTGGGAGTTAAATTTAAGCCATTTTCAAAGTTTCCTCCCTGTTACAA GGACATCAGTTTCTGGATCAATGAATCATTTACTGAAAACAATCTGTGTGAAGTTGTCAGAGGAATAGCCGGGGATCTTG CAGAGGAGGTGCAACTAATAGACAATTTCACCAACAAGAAAGGAATGACCAGCCACTGCTACAGGATTGCATATAGGTCC ATGGAACGTTCTCTAACTGATGATGAAATTAATGATCTGCAGTGGAAAGTAAGAGAACAGGTGCAGAGCAAATTGGAAGT TGTCATAAGATGA
Protein sequence (LotjaGi6g1v0336000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATVISSVHTTLFARASRFRHSNGLRSLTFCLPFSSSAASVSTDNLSRKKWRQPVVSVLDLGGVKISREVMRDDPTNNVP DNIFTKLGMQLHRRDQHPLGILKNAIYEYFDTNYSNKFNKFDDLCPLVSVKQNFDDVLVPEDHVSRSYNDTYYVDPQTVL RCHTSAHQAELLKNGNTHFLVTGDVYRRDSIDSTHYPVFHQMEGFRVFVPDEWEASGMDGTSFAAADLKKCLEGLACHLF GAVEMRWVDTYFPFTNPSFELEIYFKEKWMEVLGCGVTEQEILKRNGKPNNVAWAFGLGLERLAMVLFDIPDIRLFWSND ERFTSQFSKGQLGVKFKPFSKFPPCYKDISFWINESFTENNLCEVVRGIAGDLAEEVQLIDNFTNKKGMTSHCYRIAYRS MERSLTDDEINDLQWKVREQVQSKLEVVIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 38 | 38 | - | – | |
| PANTHER | 29 | 430 | 402 | 1.0E-189 | ||
| PANTHER | 29 | 430 | 402 | 1.0E-189 | – | |
| Gene3D | 46 | 330 | 285 | 8.5E-98 | – | |
| SUPERFAMILY | 85 | 327 | 243 | 2.49E-54 | – | |
| Pfam | 95 | 327 | 233 | 1.1E-48 | ||
| CDD | 97 | 322 | 226 | 5.11099E-94 | – | |
| ProSiteProfiles | 183 | 338 | 156 | 12.537 | ||
| SUPERFAMILY | 335 | 430 | 96 | 7.59E-28 | ||
| Gene3D | 336 | 430 | 95 | 1.2E-34 | ||
| ProSiteProfiles | 340 | 430 | 91 | 23.8 | ||
| Pfam | 340 | 430 | 91 | 4.7E-24 | ||
| SMART | 340 | 430 | 91 | 1.9E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | TRNA binding | Interacting selectively and non-covalently with transfer RNA. | ||
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Phenylalanine-tRNA ligase activity | Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Phenylalanyl-tRNA aminoacylation | The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. The phenylalanyl-tRNA synthetase is a class-II synthetase. However, unlike other class II enzymes, The activated amino acid is transferred to the 2'-OH group of a phenylalanine-accepting tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. | ||
| Biological process | TRNA aminoacylation | The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. |
Expression pattern of LotjaGi6g1v0336000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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