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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0336300 |
| Transcript ID | LotjaGi6g1v0336300.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LisH and RanBPM domains containing protein; TAIR: AT1G61150.1 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SJR3|I3SJR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0336300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65075311..65077612) extracted from Lotus japonicus Gifu genome v1.2.
TGCTTGGTGGTGGGCGTGAGAGCATCTTCTCTGTCAATCTGTGCTTGTCCTTATGGATCTACAGCAGACATAGATCTTGC GACAATCACTGATCGCATGGCTGTAAAGAAGGCAGTACAAAGTGGTAATGTTGAGGATGCAATCGAAAAAGTGAATGACT TAAATCCTGAGGTGAGCTTCCCATTCCTTTATTTCTTACAACTTCTCATTTCTATGTATCCTTATCTCCTTTACTTTTAG TTCGTATGCAATACACATAATGCATGCATTGCTCATGAGTGTGATCAATCTAATGCATTAGGTTAATAGGATGTGATATG CCCTTCTTTGAATTGATTATCTTGCTGTGTCCTACCCAACTATCCTTGCTTGTTTAACACCATATTCTTACTAGGATAAC ATCATAAGTATATCACTATCATCTACGATGGCAATGTGACCTGCATAAAAATACTGTTATTGTGCTCAATTATATTCTTT ACTTCACTCCTAGATTTTTTTTCTTTTTATTGTTCTTCTGATTTTTTATTTTATTTCTTATGTTCCACATTTTTTCAATG AATTTTTTCCCTGGGGTCAGTTTGGTATCCTAATGGATTAGGTTTTTATGAAAACTTGTATGGCATAACAATCTTTTCAT TTATATCTTGCCTTTCTTGTATTTGCTACTTTTGTTTGCTATATTTTTAAAAGCATTGCAAACCAAGCATCACAAACTAA ACATTTTCGTTCTCATAAGAACATTCATCCATCATCATCTTGTGCATCTGTTCTACAAACTTACATATTTCCTGTATAAT ACTCTATGCAGATACTGGATACAAACCCCCAACTATTTTTCCATCTTCAACAGCAGCGATTGATAGAACTAATCCGAAAT GGAAAAGTAGAGGAAGCTCTAGAGTTTGCTCAGGAGGAACTTGCTCCAAGGGGAGAGGAAAATGTAAATCTCATCAAGTG AATTTTGCATATCTTTGATCACCTGTAGCTAGGATAGGAAAACTACAGAATAGGAAAATCAATTGTTGTAGTGTGAAACT TTTTGTAATTGGCTGCACAATCCTGGTGCTAACACTTGCTTTAAATTTGGATTCCAGCATAGCTTTTTGGAAGAGTTGGA GAGGACTGTTGCACTGCTTGCCTTTGAAGATGTCTCTAACTGTCCTGTTGGCGAGCTTCTTGACATATCACAGCGTCTAA AAACAGCAAGTGAGGTGAATGCGGCCATACTTACTAGCCAGAGCCATGAAAAAGGTTTGTGTTTTCTGCAAAACTCTGCT TAGTTTATATAATTTGGGTATGTGAGCCTGGTTATAAATCTGACTTGGCTATTTAATTTATCTGATTAGTGTGTGTAATT TATATGCATTGCTTGTGATTGGTAAATAATGTCTGCTGAATAGCTACTGTTTTGTTGTAACTTGTAAAATTTGTGAACAT AATAGAAGCATTCCAAATTCTCCCAATAAAACAATCACTGTTTTGGTTGTACGCATGAACCAAATCTGATGATATATGCC CAAAAAGATGGATTCAACCTTGTAGTGCTTGAAAGTGGTTAACTATCTCACATTATGCTTGCTTTCTCGAATCGATTCAA GGGAATATTGAGATGACCAAGTGTTCATAACTTCACATACTAGGACCAACCATTTTGTAGCTTGTGGATGTCAAACATTA TGTTTATATGTGCTTTATGTCTTCCCTCTGCACTCTTAGGAAATACTTGGCTTGAATTTCTAGGAATGGTCAGCGGTGTT CGACTAGTGCAATTGAATTAGAATCCACTAGAGATGAATATCAACTGGAAAATCTTCTTATTTTGTTTATAGTTTTATTA TAGTATATTTATTTATTTATTTTCTTGAAAGTTATATACATTAATTTGGAGTATTTTGGAAACCACTTTTTTTAATGCTT AGCACGAGGATAATGCTGACTTCAAAATATTGTATGCATGTATGAATCCTTGAGTGTCTTGGAGTTAGGTTATTTTTCTT TCTATTTCTATGTCTAATTTGTTTTAATTTTCTGTTAAGATGGTTTGTTGTTTGACTTGTTTCTGAAATGTTGAAAGAAC TTCCATTTACTCTGCAATGTTTTATTATCCTTCGAATTTGTTAATGATACGCTCCAGAGTTTGGTAGCACTGATTTTTTT TGTTTTCTTTTTTGCATTAGACCCAAAACTTCCAAGCTTGTTGAAGATGCTGATCTGGGCCCAAAACCAGCTGGATGAGA AAGCTGCATATCCTCACATAAATGATATTTCCAAAGCAACATTAGAAGATCCTGCAGTTTGA
CDS sequence (LotjaGi6g1v0336300.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTAAAGAAGGCAGTACAAAGTGGTAATGTTGAGGATGCAATCGAAAAAGTGAATGACTTAAATCCTGAGATACT GGATACAAACCCCCAACTATTTTTCCATCTTCAACAGCAGCGATTGATAGAACTAATCCGAAATGGAAAAGTAGAGGAAG CTCTAGAGTTTGCTCAGGAGGAACTTGCTCCAAGGGGAGAGGAAAATCATAGCTTTTTGGAAGAGTTGGAGAGGACTGTT GCACTGCTTGCCTTTGAAGATGTCTCTAACTGTCCTGTTGGCGAGCTTCTTGACATATCACAGCGTCTAAAAACAGCAAG TGAGGTGAATGCGGCCATACTTACTAGCCAGAGCCATGAAAAAGACCCAAAACTTCCAAGCTTGTTGAAGATGCTGATCT GGGCCCAAAACCAGCTGGATGAGAAAGCTGCATATCCTCACATAAATGATATTTCCAAAGCAACATTAGAAGATCCTGCA GTTTGA
Protein sequence (LotjaGi6g1v0336300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENHSFLEELERTV ALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDEKAAYPHINDISKATLEDPA V
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 161 | 161 | 9.5E-94 | – | |
| PANTHER | 1 | 161 | 161 | 9.5E-94 | – | |
| SMART | 1 | 53 | 53 | 7.1E-13 | ||
| ProSiteProfiles | 2 | 53 | 52 | 12.81 | ||
| Pfam | 3 | 139 | 137 | 2.7E-36 | ||
| SMART | 49 | 145 | 97 | 1.4E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0336300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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