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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0337400 |
| Transcript ID | LotjaGi6g1v0337400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclease S1; TAIR: AT1G11190.1 bifunctional nuclease i; Swiss-Prot: sp|Q9SXA6|ENDO1_ARATH Endonuclease 1; TrEMBL-Plants: tr|I3SHH3|I3SHH3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0337400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65195623..65198591) extracted from Lotus japonicus Gifu genome v1.2.
CACTAACGTATAAGCAAAGAACTTCAATTCACAGAAACAAATCATTTTGACCTAGCTTTACTCAACACTTTCAACAATAA AATCTTGAGTTATAGTTTCACATGGCTCCAGTGCATCATGTCTTGTATATACCAGAATATGCCATCTTCCCTTGAAGTTA AGGTCAATTATTCGACCATGCTTCATTAAATAAATACGTAGTATGTCAATCTTGTACTCAATGAAAACCCAGTAACGTGT TCCTTCAAGCTAATCTTAAAATTAAAGCCCTATATATCTGTAATGTACCTTCCAAAAGGAAACAAAACAGATGAAGTAAT CAGAAAAATTATAATCTAGTTAGAAGATGGTTAGGCTTGGAGATTTGTTGGTGTCTCTTCCATTTGGATTATTTTTGTTG CTCTCAGGTGCTTTCATCACAATACCTGGTGCCAATGCCTGGAGCAAAGAGGGTCATGAGATGACATGCCTAATCGCACA GGTAAAGTTCAATCCCAATCCTCAAGCAATAAACACAATTGAATATATATTTGGATTGATGTAAGTGTTCTTACTTAATT TAGAGAAACTGAAAAGCAAGTGAATTGAGATTTTAATTATAGGAAAGTAATTGGAACTTAATTGTTTGAATGATAGGCAT TTTTGAAGCCTGAGGCATCTGAAGCAATTTCCCATTTGCTACCTCCTAATGTGAAAGGTAACTTATCAGCACTTTGCACA TGGCCCGACCAAATAAGGCACTGGTACAAATATAGATGGACAAGTCCACTTCATTTCATTGACACCCCTGATGATGCTTG TACTTTTGATTATTCAAGTAAGTATATGTTTATATCATATGGTTATTTTGTCATGTGCTCCTCAAGGCTCAAAATACTCA AAGAGCAAAACCTTTGCGCTATAAAACTCCTCCTACGCTCGAGTAGGCAGTCTACCTTGGATTTTTCCAAGAAGTTGATT CCACAGCTCGAACATATGACCGCAAAGTCACATGGCAGCAACGTTACTGTTGGCTTAAGATACTAATGCATGAAATTCTT GTTCTTACAACAGGAGACTGCCATGATCCAAAAGGCGTGAAGGATATGTGTGTTGCAGGAGCTATAAAAAATTTCACTTC TCAGCTTTCACATTACAAAGAAGGGACATCTGATCGTAGATGTAAGGGAATCAAGTTTTTCTAACATAAGCTCTTGATTA AAATTTTCAATTTCTTCTTAGTAATTTGGCTTCATTCATTCATTTTCTGATCTTTCAGATAATATGACTGAGGCGTTGTT GTTCTTGTCACACTTCATGGGAGATGTACACCAGGTTTGTGATAAACTCTTCAAAAGTGCTATATTCTGTAGCTTCTTAC CATCCACTTAGACTAAAACTTTTGTGGACTCTGTTTTTTTCAGCCTATGCATGTTGGATTCACCACTGATGAAGGAGGAA ACACAATAAACCTGCGCTGGTTTAGGCACAAATCTAATCTGCATCATGTAAGCTGCTCCATCTTTCTGTATTTCAAAACA AAATCTAAATAGAAGACAATTTAATTTAATTAATATACAAAAGACCACTTTTAGCTAGGCAAGTATATTGCTAGAGTGGA TACAAATTTTCAACTCCATAATTATTAGAAAACCATTTTCTTTATTTGACCACTTATCTTGTTTTGGTGCATCATTAGGT GTGGGACAGAGAAATTATTCTCACAGCACTATCAGACTATTATGACAAGGATGTGAGTCTCCTCCTCCAAGACATTGAGA GGAACATCACTGATGTAAGACCAAATTTGTCTCTCAACCATCTAGCTTTTATTAAACTCATTGATTCTTTTAATATTCCA AATATAATCAACAATTTTCATGGAATTCGTTCTATAATTGATTGTAAAGTCAAACTCAATTTTGGGAAGAAGTTTAGATG AATCGCCAGGATTGATTATGAGAAAATGTAAGTTGATCCAAAATGCTAAATACCTTATTTCTTCTATGCAGGGAATGTGG GCTGATGATGTTACCTCTTGGGAACATTGTAATGATCTCTCTCACTGTGTAAATAAGTAAGCTCTTCACATTTTCTTGCC TCTTGTTGTTACTGCTTATGCATAGATTCCTCACATTGGATACGCTTATTTTGAAATCATATAGTTGGGCAAAAGAGAGC ATACAAGTAGCTTGCAAATGGGGTTATGAAGGAGTTCAATCTGGAATGACTTTATCAGGTAAGAAAATTGTGACCAACCA TAAACTCAACCAGTAATTAGTAAGCTTCTCTGTTAAGAACAGAACTAATACAATTAGTTTTTTTTCCTTATCTATCTAAA TAATTCATTCATGATTTTGTTTAAGTACGACTTTGCACCTGTGATCCTTTTACAGATGAATACTTTGACTCAAGGATGCC ATTTGTGATGAAACGAATTGCTCAGGGTGGAATTAGATTGGCCATGATTCTGAACCAGGTGTTTGGTGATGACCATGAAG AAGGATTTGCAACAGCAACTTAAGCTGACCCACCAAGACGTAGACTTACACAAATTAAGTGCTTAAATTTGTGAATAACC ATAGGGTCTAGACAACATGAATGCATAGACCTGACAAAGTCACTTGTAAAATTTAATTTGTTTGTAACCATAGTGTGTGA TTAGGTGAGCATTTGAAAAACCTGATTTTAGATTGTCCTGACTTTTCAAAGTTGATTTTTATTAATATATAGAGTACAAT TTGAAGAAAATTGATTTAATTTTCTGTATTTTTATTGCAAAAGGGCAATACCAATGTCCATACAATAATCAAACAAGCAA TTAGCTAGGACCAATATTCAACTCCTAATCAGGGCACTCAGGGATGAGAACAAGGCATTAGCAACTAGGCTACCCCAGCA TCCAATGAAAGAATCTGCTCTCGTAAAGTATATATGTGTATATATGTTGGGCATAAAAAATGAGAGTAAATAGTTGAATT CCTCCTTGA
CDS sequence (LotjaGi6g1v0337400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTAGGCTTGGAGATTTGTTGGTGTCTCTTCCATTTGGATTATTTTTGTTGCTCTCAGGTGCTTTCATCACAATACC TGGTGCCAATGCCTGGAGCAAAGAGGGTCATGAGATGACATGCCTAATCGCACAGGCATTTTTGAAGCCTGAGGCATCTG AAGCAATTTCCCATTTGCTACCTCCTAATGTGAAAGGTAACTTATCAGCACTTTGCACATGGCCCGACCAAATAAGGCAC TGGTACAAATATAGATGGACAAGTCCACTTCATTTCATTGACACCCCTGATGATGCTTGTACTTTTGATTATTCAAGAGA CTGCCATGATCCAAAAGGCGTGAAGGATATGTGTGTTGCAGGAGCTATAAAAAATTTCACTTCTCAGCTTTCACATTACA AAGAAGGGACATCTGATCGTAGATATAATATGACTGAGGCGTTGTTGTTCTTGTCACACTTCATGGGAGATGTACACCAG CCTATGCATGTTGGATTCACCACTGATGAAGGAGGAAACACAATAAACCTGCGCTGGTTTAGGCACAAATCTAATCTGCA TCATGTGTGGGACAGAGAAATTATTCTCACAGCACTATCAGACTATTATGACAAGGATGTGAGTCTCCTCCTCCAAGACA TTGAGAGGAACATCACTGATGGAATGTGGGCTGATGATGTTACCTCTTGGGAACATTGTAATGATCTCTCTCACTGTGTA AATAATTGGGCAAAAGAGAGCATACAAGTAGCTTGCAAATGGGGTTATGAAGGAGTTCAATCTGGAATGACTTTATCAGA TGAATACTTTGACTCAAGGATGCCATTTGTGATGAAACGAATTGCTCAGGGTGGAATTAGATTGGCCATGATTCTGAACC AGGTGTTTGGTGATGACCATGAAGAAGGATTTGCAACAGCAACTTAA
Protein sequence (LotjaGi6g1v0337400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRLGDLLVSLPFGLFLLLSGAFITIPGANAWSKEGHEMTCLIAQAFLKPEASEAISHLLPPNVKGNLSALCTWPDQIRH WYKYRWTSPLHFIDTPDDACTFDYSRDCHDPKGVKDMCVAGAIKNFTSQLSHYKEGTSDRRYNMTEALLFLSHFMGDVHQ PMHVGFTTDEGGNTINLRWFRHKSNLHHVWDREIILTALSDYYDKDVSLLLQDIERNITDGMWADDVTSWEHCNDLSHCV NNWAKESIQVACKWGYEGVQSGMTLSDEYFDSRMPFVMKRIAQGGIRLAMILNQVFGDDHEEGFATAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 31 | 31 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 7 | 19 | 13 | - | – | |
| PANTHER | 11 | 303 | 293 | 3.5E-175 | – | |
| PANTHER | 11 | 303 | 293 | 3.5E-175 | ||
| Phobius | 20 | 31 | 12 | - | – | |
| Gene3D | 32 | 306 | 275 | 1.9E-112 | ||
| CDD | 32 | 296 | 265 | 3.84357E-91 | ||
| Pfam | 32 | 296 | 265 | 1.2E-82 | ||
| Phobius | 32 | 308 | 277 | - | – | |
| SUPERFAMILY | 32 | 295 | 264 | 5.63E-81 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Endonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. | ||
| Biological process | DNA catabolic process | The cellular DNA metabolic process resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one. | ||
| Molecular function | Hydrolase activity, acting on ester bonds | Catalysis of the hydrolysis of any ester bond. |
Expression pattern of LotjaGi6g1v0337400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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