Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0338100 |
| Transcript ID | LotjaGi6g1v0338100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pre-mRNA-splicing factor SYF1; TAIR: AT5G28740.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9HCS7|SYF1_HUMAN Pre-mRNA-splicing factor SYF1; TrEMBL-Plants: tr|K7M1P8|K7M1P8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0338100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65248687..65254311) extracted from Lotus japonicus Gifu genome v1.2.
ACACCATTGTTTGTCTTAGAAGCCATCAATCGATCGACCTCAAGTATATTTTATTTATGTGTGGTCGTTGTTGGTGAGTT GTTGCTTCAGCCTTGTTTTGTTTTCGGGCTACCCTCCCCAGGGATGAGTATTGATGGCACCGGCCCTAGAACCATACACA GCCCAAACTCAAGGCAATACCTTGGGCCCATTATCAGATATATTCTTTCTATTTCCTTCATATTCCAAGTTAGTGGGTAA GGGTTTTAGGATAATTCATTCCACTGTCAGAATCGATTCCGATTCCGATTCCGATTTCGGAGATGGCGACGATTTCGCAG GAGCTGTACCCATCGCAAGACGATCTTCTCTACGAAGAAGAGCTTCTCCGAAACCCCTTCAGCCTCAAGCTATGGTGGCG TTACCTCATCGCTCGATCTGAATCTCCCTTCAAGAAGCGTTTCATCATCTACGAGCGTGCCCTCAAAGCTCTCCCCGGAA GCTACAAGCTCTGGTACGCTTACCTCCGTGAACGCCTCGACCTCGTTCGCAACCTCCCCGTCACTCACTCCCACTACGAT TCCCTCAACAACACCTTCGAGCGTGCTCTAGTCACTATGCACAAGATGCCCAGGATCTGGATCATGTATCTTCAAACCCT AACTCACCAGAAGCTCGTTACGCGGACGCGGAGGACGTTCGATAGAGCTCTCTGCGCGCTACCGGTGACCCAGCATGACC GCATTTGGGAGCCTTACCTTCTGTTTGTCAGCCAGAAGGGTATCCCCATTGAGACCTCGCTTAGGGTTTATCGCAGGTAT TTGAAATATGACCCTTCTCATATTGAAGATTTCATTGAGTTTTTGGTTAATTCTAGTTTATGGCAAGAGGCTGCTGAGAG GTTAGCTTCTGTGTTGAATGATGATCAGTTTTATTCCATAAAAGGGAAAACCAAACACAGGCTTTGGTTGGAGCTTTGTG ATTTGCTTACTAGGCATGCCAATGAGGTTTCTGGGTTGAATGTAGATGCTATCATTAGGGGTGGGATTAGGAAGTTTACT GATGAGGTGGGTAGGCTTTGGACTTCACTGGCGGAGTATTACATTAGGAGGGGTTTGCATGAGAAGGCCAGGGATGTGTT TGAGGAGGGTATGTCCACGGTCGTAACAGTCAGGGATTTCAGTGTCATATTTGATTCGTACTCTCAGTTTGAAGAGAGCA TGCTTGCTTATAAGATGGAAGAGATGAGTATGAGTGACGAGGAGGATGAAGAGGAAGATGGGGTTCAGGACAAGGTGGAG GAGGAAGAGGAAGATATTAGGTTCAAAGTGAAATCATCCCTGGAGGAGTTCGAGAAGGCTATACACGGGTTTTGGTTGAA TGACAAAAATGACATAGACTTGAGATTGGCTCGATTCGACTACCTAATAAAGAGGAGGCCAGAATTGGCTAATAGTGTGC TTTTGCGTCAGAATCCTCATAATGTAGAACAGTGGCACCGACGGGTGAAGCTTTTTGAGGGTAATCCTACTAAGCAGATT CTCACTTACACGGAGGCTGTGAGGACAGTTGATCCCATGCAGGCTGTGGGAAAGCCTCATACTTTGTGGGTTGCTTTTGC TAAACTTTATGAGGAGCACAAAGATCTCACCAATGCTCGGATCATATTTGACAAGGCAGTACAGGTCAACTACAAAACTG TGGATAATCTGGCTAGTGTCTGGTGTGAGTGGGCAGAAATTGAGTTGAAACACAACAATTTTAAAGGAGCACTTGAGCTT ATGAGGCGAGCTACAGCAGAGCCATCAGTTGAGGTCAAACGTAGAGGTATTCTTAGTTGACCTTGTTTGAATTTTATTTT TTCCAGCATGCTGTACTTTATTTAGCCTTTAATTTTGTTATTTTGTTCATTTGGTGGAGTGTACTAACTTTTGATTTTTC ATATGCTTTTCTCTTAGTGGCTGCTGATGGGAATGAACCCGTACAGATGAGGCTGCATAAATCTTTGAGGCTGTGGACCT TTTATGTTGATTTGGAGGAAAGCCTGGGTAATTTAGAGTCTACTCGGGCAGTTTATGAGCGGATATTGGATTTACGTATA GCCACACCACAAATAATCATTAATTATGCATACTTTCTGGAGGTATGGAGCAATCCTTGTGTCATAGCAAAATATCTCGT CTCTTTCACCGGTTTTGACTGATTGACAAATTCTTACATTGATATATGCAGGAACACAAATACTTTGAAGATGCTTTTAA AGTTTATGAAAGAGGTGTGAAGATATTTAAGTACCCACATGTTAAAGATATATGGGTTACATATCTGTCTAAATTTGTGA AGAGATATGGAAAGACAAAATTGGAGAGAGCGAGAGAACTGTTTGAGAATGCAGTTGAAACGGTATGCACATATTTCTTT TGGTTGCTTAAATTTATGAGTTCTTGAAGTTTTTTATCTTCACAAGTTTTACGTTCATGATAGCTGAGTGGTTATGTTTA AAATGTGTCAAATATAGAGTAATCTTATTTCTCTTATGGTTTTTTGTTAATAAACCATCATCAATTGTCTGCTTGATCTC TCAGTATTGCTTGTCTTTTGTATGCTGTAATTTTATAATCATAAGTCAACATGCTCTTTTAGGGTTTTATGCAGTTTGAA GTGAATTTTGTTACTGTTCTTTTGCTGACAAAATAGGTACAAAGAAGACATTTCAATTAGAAGAAGAGGAATACTTCAGG TTGATTAAAATGGTTGTAAACTGTTTTCAAACTTGTAATTTGAAATTTACTACGCTTGGGGTCTTGTACATGTCAAATAT GAAGAATTAGAGGTCTTGCATTGGGAAAATTCTTTGATGGAATTGGAATTGTGTGATTTTTGTGATCGGACTAATGAAAT TGGTTTTCAACTGAGCACAATGAGGCATTAGATAGAGTGGTGGAATGTAGAACCCTTGGTTGTGAGATAATGTTTGATTG TCATCCTATGATCTTTGTTTTTGATAGGATCAGAACCTACATATGTTTAATAGTGGTTGAAATTTGAAGAATTAGGTAGA GTGAGGAGGCTACACTCAGAATCGAATAGTTTTACCCTGGAAGAATTGTCAGTACCTATCCGTTACCAAAAGCAACTTGT TTGTAGAATCACTCTTTGCCAAGCCCATGCTATGCACCGAACATAAATTACCATACACCCAACTGTGATCACACAAAATA GAGACAAACTAAAATTAGGGTGGATTGCAATCTAATACACTCGACCTGCTAATATCACATTTAGGAATTTATTCAAACAG TGGAGAGAATGATAGCTAGCCTAGATTCATCATATTCATTCACCCTTAGAGATCTACATCTTGATTGAAGAGTACAAAAA TGGCATCTGAATGCTTCCATAAACTGATCCACTATACCGATTATGACACACAATTGTAAAAAAATGACAAACATTCAGTT GAGAAAAGCATGAGTTCAAGCCTGTTGGAAGGTGCTAACTGATGCCAAGATAGAACCACCAATCCAGTTCAGACACTATA ATTCCTTTAAGTAGGTGTAACCACAATGATTTTCATACTGCTTGGAACAAGAGCTCTAATTTGCTTGCTCTTGCGACCAG TAACTACTCTGTTAAACCACACCTGCAAGTTCCAATGTAACAATGGCATAAAATCAGTCTTTTGAGGCCTCTGTACATGG CATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACTATCTCTGAA CAACAAGGTTTTTTGCTTAAACTAGAAATGAAAATGAGTTTTTTGTGTGTTGGGGTTAGGATAATTTCATGTGTAAATTA GGATTGAGATTATGATTTGGGTAATGAACAGATCTTGTAGGATCAGGGTATCTGTAAAAATGAAATTGCTTGAAGAAATG CATCATAAAAATGCAACTGTCCCGGTTTTTATCTGTAAAGAAATGCATCATCATAACAAGTAATTATTTTTTCATATTTG CAGTATATGATGATGGTATTTAATTGTCTGATTATGTGTTTGTGTCAAATATTAATTTTGAATGCTGATAATGTATTTTA AATTTCTAATGCTAACCTAATCCTTCTTTTGGGTCATACATGTCAAACAGGCCCCTGCTGATCAAGTGAAACCTCTCTAC CTGCAATATGCTAAGCTGGAAGAGGACTATGGACTTGCTAAGAGAGCTATGAATGTTTATGCTCAAGCAACTAAAGCTGT ACCTGGTAATGAAAAGCTAAGCATGTATGAAATATTCATTGCTCGTGCAGCTGAGATATTTGGTGTCCCCAAAACAAGGG AGATCTATGAGCAGGCTATTGAATCTGGTCTTCCCGACAAGGATGTCAAAACTATGTGTTTGAAGTATGCTGAGCTGGAA AAAAGTTTGGGTGAAATTGATCGTGCCCGTGGAATATACACATTTGCCTCTCAGTGTGCAGATCCGCGATCTGATCCAGA CTTTTGGAACAAGTGGCATGAATTTGAAGTTCAGCATGGAAATGAAGATACATTCAGAGAAATGCTTCGCATTAAGCGCA GTGTCTCTGCAAGCTACAGCCAGGTACTATAATTTTTCATTTTTCCTTTTTCCTTCAAGTCTGTCAATTTAGATTTTTGC ATTTGTTCTAATCTTCTGCTGTTTTTTTTTTCAGACACATTTTATACTGCCCGAGTATCTGATGCAGAAGGATCAAACTG TAAATCTGGATGAGGCGAAAGACAAATTGAAGCAGGCTGGGGTCCCTGAGGATGAAATGGCTGCTTTAGAAAGGCAATTA GCCCCAGCAGTTGACAATGGTCTTTCAAAAGACAGAAAAGTAGGGTTTGTGAGTGCTGGAGTGGAATCACAGTCAGATGG AGGAATAAAGGCCCGTGCAAATCATGAGGATATCGAGTTACCTGAAGATAGTGACTCGGATGATGATGATGACAAGATTG AGATTGCACAGAAAGATGTTCCTTCTGCTGTTTTTGGTGGTTTGATCAGACAGAGAGATGAGGATGAAAACAATGGAGAA GTAGATGGTGCAAAAGAAAATGAAAATGAAAGCCGGCTTGGTGCACTTGAGAGAATGAAAAGGCTAAAACGAAACTAAAT GTTGGGTCACAGCAAATTTTGATAGCAGTGAAATGAAATTAATTTTGTTGGTATGTATTTTGTACTGACAGCAATCTAAC TAGTGTGCTTTGACTGTATCTATTTTAGATGTGTACATTTTACAGTGAAGTGCAGTTCTTAAGCTCTGATGCCTTGCAAT TAAATGAAATTTCAGCTTCCAGCTCCATAAGTGCCAGAAAAATTGTGTTACTATTTATTAGTAATGTTTGCTTTACCTGG AAAATTATTGTGGACTACTTTTAGGTACGTTCAGATCAGATATAGTCGGTGTATATGATAACAATAGTTTTAATTTCGCT CTTTTATTGTTTTTGTAATTTTGTTGCGGTTTTTCTCTGTCATGGGCTGTCTTTACTCACAAAATGTTATTGGTCGATGC TTGACTTTGCTCCATTGAAACTTCGCAATAAATCTTCGATTTTAATAAAAACGTTGTAATAAATAGTGTCCACAATTGAC GAAACACACTTGTATTCAAAATGGA
CDS sequence (LotjaGi6g1v0338100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACGATTTCGCAGGAGCTGTACCCATCGCAAGACGATCTTCTCTACGAAGAAGAGCTTCTCCGAAACCCCTTCAG CCTCAAGCTATGGTGGCGTTACCTCATCGCTCGATCTGAATCTCCCTTCAAGAAGCGTTTCATCATCTACGAGCGTGCCC TCAAAGCTCTCCCCGGAAGCTACAAGCTCTGGTACGCTTACCTCCGTGAACGCCTCGACCTCGTTCGCAACCTCCCCGTC ACTCACTCCCACTACGATTCCCTCAACAACACCTTCGAGCGTGCTCTAGTCACTATGCACAAGATGCCCAGGATCTGGAT CATGTATCTTCAAACCCTAACTCACCAGAAGCTCGTTACGCGGACGCGGAGGACGTTCGATAGAGCTCTCTGCGCGCTAC CGGTGACCCAGCATGACCGCATTTGGGAGCCTTACCTTCTGTTTGTCAGCCAGAAGGGTATCCCCATTGAGACCTCGCTT AGGGTTTATCGCAGGTATTTGAAATATGACCCTTCTCATATTGAAGATTTCATTGAGTTTTTGGTTAATTCTAGTTTATG GCAAGAGGCTGCTGAGAGGTTAGCTTCTGTGTTGAATGATGATCAGTTTTATTCCATAAAAGGGAAAACCAAACACAGGC TTTGGTTGGAGCTTTGTGATTTGCTTACTAGGCATGCCAATGAGGTTTCTGGGTTGAATGTAGATGCTATCATTAGGGGT GGGATTAGGAAGTTTACTGATGAGGTGGGTAGGCTTTGGACTTCACTGGCGGAGTATTACATTAGGAGGGGTTTGCATGA GAAGGCCAGGGATGTGTTTGAGGAGGGTATGTCCACGGTCGTAACAGTCAGGGATTTCAGTGTCATATTTGATTCGTACT CTCAGTTTGAAGAGAGCATGCTTGCTTATAAGATGGAAGAGATGAGTATGAGTGACGAGGAGGATGAAGAGGAAGATGGG GTTCAGGACAAGGTGGAGGAGGAAGAGGAAGATATTAGGTTCAAAGTGAAATCATCCCTGGAGGAGTTCGAGAAGGCTAT ACACGGGTTTTGGTTGAATGACAAAAATGACATAGACTTGAGATTGGCTCGATTCGACTACCTAATAAAGAGGAGGCCAG AATTGGCTAATAGTGTGCTTTTGCGTCAGAATCCTCATAATGTAGAACAGTGGCACCGACGGGTGAAGCTTTTTGAGGGT AATCCTACTAAGCAGATTCTCACTTACACGGAGGCTGTGAGGACAGTTGATCCCATGCAGGCTGTGGGAAAGCCTCATAC TTTGTGGGTTGCTTTTGCTAAACTTTATGAGGAGCACAAAGATCTCACCAATGCTCGGATCATATTTGACAAGGCAGTAC AGGTCAACTACAAAACTGTGGATAATCTGGCTAGTGTCTGGTGTGAGTGGGCAGAAATTGAGTTGAAACACAACAATTTT AAAGGAGCACTTGAGCTTATGAGGCGAGCTACAGCAGAGCCATCAGTTGAGGTCAAACGTAGAGTGGCTGCTGATGGGAA TGAACCCGTACAGATGAGGCTGCATAAATCTTTGAGGCTGTGGACCTTTTATGTTGATTTGGAGGAAAGCCTGGGTAATT TAGAGTCTACTCGGGCAGTTTATGAGCGGATATTGGATTTACGTATAGCCACACCACAAATAATCATTAATTATGCATAC TTTCTGGAGGAACACAAATACTTTGAAGATGCTTTTAAAGTTTATGAAAGAGGTGTGAAGATATTTAAGTACCCACATGT TAAAGATATATGGGTTACATATCTGTCTAAATTTGTGAAGAGATATGGAAAGACAAAATTGGAGAGAGCGAGAGAACTGT TTGAGAATGCAGTTGAAACGGCCCCTGCTGATCAAGTGAAACCTCTCTACCTGCAATATGCTAAGCTGGAAGAGGACTAT GGACTTGCTAAGAGAGCTATGAATGTTTATGCTCAAGCAACTAAAGCTGTACCTGGTAATGAAAAGCTAAGCATGTATGA AATATTCATTGCTCGTGCAGCTGAGATATTTGGTGTCCCCAAAACAAGGGAGATCTATGAGCAGGCTATTGAATCTGGTC TTCCCGACAAGGATGTCAAAACTATGTGTTTGAAGTATGCTGAGCTGGAAAAAAGTTTGGGTGAAATTGATCGTGCCCGT GGAATATACACATTTGCCTCTCAGTGTGCAGATCCGCGATCTGATCCAGACTTTTGGAACAAGTGGCATGAATTTGAAGT TCAGCATGGAAATGAAGATACATTCAGAGAAATGCTTCGCATTAAGCGCAGTGTCTCTGCAAGCTACAGCCAGACACATT TTATACTGCCCGAGTATCTGATGCAGAAGGATCAAACTGTAAATCTGGATGAGGCGAAAGACAAATTGAAGCAGGCTGGG GTCCCTGAGGATGAAATGGCTGCTTTAGAAAGGCAATTAGCCCCAGCAGTTGACAATGGTCTTTCAAAAGACAGAAAAGT AGGGTTTGTGAGTGCTGGAGTGGAATCACAGTCAGATGGAGGAATAAAGGCCCGTGCAAATCATGAGGATATCGAGTTAC CTGAAGATAGTGACTCGGATGATGATGATGACAAGATTGAGATTGCACAGAAAGATGTTCCTTCTGCTGTTTTTGGTGGT TTGATCAGACAGAGAGATGAGGATGAAAACAATGGAGAAGTAGATGGTGCAAAAGAAAATGAAAATGAAAGCCGGCTTGG TGCACTTGAGAGAATGAAAAGGCTAAAACGAAACTAA
Protein sequence (LotjaGi6g1v0338100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATISQELYPSQDDLLYEEELLRNPFSLKLWWRYLIARSESPFKKRFIIYERALKALPGSYKLWYAYLRERLDLVRNLPV THSHYDSLNNTFERALVTMHKMPRIWIMYLQTLTHQKLVTRTRRTFDRALCALPVTQHDRIWEPYLLFVSQKGIPIETSL RVYRRYLKYDPSHIEDFIEFLVNSSLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTRHANEVSGLNVDAIIRG GIRKFTDEVGRLWTSLAEYYIRRGLHEKARDVFEEGMSTVVTVRDFSVIFDSYSQFEESMLAYKMEEMSMSDEEDEEEDG VQDKVEEEEEDIRFKVKSSLEEFEKAIHGFWLNDKNDIDLRLARFDYLIKRRPELANSVLLRQNPHNVEQWHRRVKLFEG NPTKQILTYTEAVRTVDPMQAVGKPHTLWVAFAKLYEEHKDLTNARIIFDKAVQVNYKTVDNLASVWCEWAEIELKHNNF KGALELMRRATAEPSVEVKRRVAADGNEPVQMRLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYAY FLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADQVKPLYLQYAKLEEDY GLAKRAMNVYAQATKAVPGNEKLSMYEIFIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGEIDRAR GIYTFASQCADPRSDPDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQTVNLDEAKDKLKQAG VPEDEMAALERQLAPAVDNGLSKDRKVGFVSAGVESQSDGGIKARANHEDIELPEDSDSDDDDDKIEIAQKDVPSAVFGG LIRQRDEDENNGEVDGAKENENESRLGALERMKRLKRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 853 | 848 | 0.0 | – | |
| PANTHER | 6 | 853 | 848 | 0.0 | – | |
| Gene3D | 17 | 188 | 172 | 7.2E-24 | ||
| SUPERFAMILY | 18 | 69 | 52 | 1.28E-7 | ||
| SMART | 41 | 73 | 33 | 6.6 | ||
| SMART | 83 | 115 | 33 | 17.0 | ||
| SUPERFAMILY | 83 | 399 | 317 | 3.6E-15 | ||
| SMART | 117 | 151 | 35 | 28.0 | ||
| Gene3D | 189 | 348 | 160 | 3.1E-6 | ||
| SMART | 264 | 299 | 36 | 10.0 | ||
| Coils | 311 | 331 | 21 | - | – | |
| Gene3D | 380 | 488 | 109 | 2.5E-9 | ||
| SUPERFAMILY | 419 | 492 | 74 | 1.79E-12 | ||
| SMART | 440 | 476 | 37 | 1.3 | ||
| SUPERFAMILY | 510 | 672 | 163 | 1.39E-22 | ||
| Gene3D | 515 | 667 | 153 | 4.2E-21 | ||
| ProSiteProfiles | 518 | 660 | 143 | 9.732 | ||
| SMART | 532 | 564 | 33 | 0.5 | ||
| SMART | 566 | 600 | 35 | 11.0 | ||
| SMART | 605 | 639 | 35 | 4.0E-4 | ||
| Gene3D | 668 | 798 | 131 | 2.4E-14 | ||
| SMART | 677 | 712 | 36 | 280.0 | ||
| SUPERFAMILY | 681 | 760 | 80 | 2.39E-11 | ||
| SMART | 714 | 748 | 35 | 28.0 | ||
| MobiDBLite | 832 | 918 | 87 | - | – | |
| MobiDBLite | 882 | 911 | 30 | - | – | |
| Coils | 898 | 918 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi6g1v0338100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…