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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1549760 |
| Transcript ID | Lj2g3v1549760.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: transcription initiation factor TFIID subunit 1-A-like [Glycine max] gi|356529777|ref|XP_003533464.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | – | – | |
| PANTHER | 19 | 418 | 400 | 0 | – | |
| PANTHER | 19 | 418 | 400 | 0 | – | |
| Pfam | 20 | 61 | 42 | 1.80E-09 | ||
| SUPERFAMILY | 24 | 62 | 39 | 3.14E-07 | ||
| Gene3D | 29 | 61 | 33 | 1.10E-06 | ||
| MobiDBLite | 68 | 121 | 54 | – | – | |
| MobiDBLite | 139 | 205 | 67 | – | – | |
| PANTHER | 452 | 703 | 252 | 0 | – | |
| PANTHER | 452 | 703 | 252 | 0 | – | |
| MobiDBLite | 471 | 492 | 22 | – | – | |
| Pfam | 589 | 1155 | 567 | 5.60E-124 | ||
| MobiDBLite | 597 | 616 | 20 | – | – | |
| SUPERFAMILY | 640 | 740 | 101 | 7.37E-15 | ||
| Gene3D | 664 | 741 | 78 | 3.70E-12 | – | |
| ProSiteProfiles | 670 | 740 | 71 | 14.295 | ||
| SMART | 670 | 742 | 73 | 1.10E-11 | ||
| Pfam | 672 | 742 | 71 | 3.20E-10 | ||
| CDD | 674 | 742 | 69 | 6.33E-08 | – | |
| PANTHER | 765 | 1477 | 713 | 0 | – | |
| PANTHER | 765 | 1477 | 713 | 0 | – | |
| MobiDBLite | 1241 | 1261 | 21 | – | – | |
| Coils | 1271 | 1291 | 21 | – | – | |
| MobiDBLite | 1447 | 1475 | 29 | – | – | |
| MobiDBLite | 1498 | 1519 | 22 | – | – | |
| PANTHER | 1529 | 1711 | 183 | 0 | – | |
| PANTHER | 1529 | 1711 | 183 | 0 | – | |
| Coils | 1673 | 1712 | 40 | – | – | |
| MobiDBLite | 1691 | 1739 | 49 | – | – | |
| PANTHER | 1742 | 1884 | 143 | 0 | – | |
| PANTHER | 1742 | 1884 | 143 | 0 | – | |
| SUPERFAMILY | 1752 | 1872 | 121 | 6.28E-27 | ||
| Gene3D | 1753 | 1845 | 93 | 1.70E-24 | ||
| SMART | 1760 | 1871 | 112 | 2.30E-23 | ||
| CDD | 1770 | 1866 | 97 | 2.28E-24 | – | |
| ProSiteProfiles | 1781 | 1851 | 71 | 19.178 | ||
| Pfam | 1782 | 1848 | 67 | 2.50E-18 | ||
| PRINTS | 1784 | 1797 | 14 | 3.90E-10 | ||
| ProSitePatterns | 1786 | 1843 | 58 | – | ||
| PRINTS | 1798 | 1814 | 17 | 3.90E-10 | ||
| PRINTS | 1814 | 1832 | 19 | 3.90E-10 | ||
| PRINTS | 1832 | 1851 | 20 | 3.90E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v1549760.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1549760.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.