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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2825560 |
| Transcript ID | Lj4g3v2825560.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-like isoform X2 [Cicer arietinum] gi|502183352|ref|XP_004517119.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 38 | 708 | 671 | 0 | – | |
| PANTHER | 38 | 708 | 671 | 0 | – | |
| SUPERFAMILY | 72 | 133 | 62 | 5.07E-39 | ||
| Hamap | 72 | 690 | 619 | 39.239 | ||
| Gene3D | 74 | 291 | 218 | 4.30E-27 | ||
| TIGRFAM | 74 | 687 | 614 | 7.00E-261 | ||
| Pfam | 75 | 466 | 392 | 6.90E-153 | ||
| PRINTS | 75 | 97 | 23 | 8.20E-06 | – | |
| SUPERFAMILY | 164 | 328 | 165 | 5.07E-39 | ||
| PRINTS | 219 | 228 | 10 | 8.20E-06 | – | |
| ProSitePatterns | 341 | 355 | 15 | – | ||
| Pfam | 469 | 682 | 214 | 1.10E-63 | ||
| SMART | 612 | 683 | 72 | 8.00E-34 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | TRNA wobble uridine modification | The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. | ||
| Biological process | TRNA processing | The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj4g3v2825560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2825560.1, powered by CORGI.
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