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Field | Value |
---|---|
Gene ID | Lj4g3v2825560 |
Transcript ID | Lj4g3v2825560.2 |
Related isoforms 3 | |
Lotus japonicus genome version | MG20 v3.0 |
Description | PREDICTED: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-like isoform X2 [Cicer arietinum] gi|502183352|ref|XP_004517119.1| |
Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 36 | 709 | 674 | 0 | – | |
PANTHER | 36 | 709 | 674 | 0 | – | |
Hamap | 73 | 691 | 619 | 39.239 | ||
SUPERFAMILY | 73 | 134 | 62 | 5.07E-39 | ||
Gene3D | 75 | 292 | 218 | 4.30E-27 | ||
TIGRFAM | 75 | 688 | 614 | 7.00E-261 | ||
PRINTS | 76 | 98 | 23 | 8.20E-06 | – | |
Pfam | 76 | 467 | 392 | 6.90E-153 | ||
SUPERFAMILY | 165 | 329 | 165 | 5.07E-39 | ||
PRINTS | 220 | 229 | 10 | 8.20E-06 | – | |
ProSitePatterns | 342 | 356 | 15 | – | ||
Pfam | 470 | 683 | 214 | 1.10E-63 | ||
SMART | 613 | 684 | 72 | 8.00E-34 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | TRNA wobble uridine modification | The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. | ||
Biological process | TRNA processing | The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. | ||
Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj4g3v2825560.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2825560.2, powered by CORGI.
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