Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0146200 |
| Transcript ID | LotjaGi1g1v0146200.1 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:24763899..24771846) extracted from Lotus japonicus Gifu genome v1.2.
ATGTAGTTAACTTGGTAGAGTAGGTGGGGTGGAGTGTAGATTTTAATCAAGAATGGGGCTGAGTGTCATATTGACAAACC TTAAGGGAGGGGAGTGTATTTTACTCTTTAAAATTTGGTGAAACTTACGGGCGTGCGTTCATTTTGTCGTTTCATTTCTC TCATCGTGAGATTGTTCGTTATTTCGCTAGCTAGGTTTCTCCTTCATCTTCTCTTCGATTCTGATTCATTCAGTGTTTTC TTCTCTTTCTCGATTCCCCCTCCTTTCCCTGATTTTGTTAAAATATTTTTGGAATTGCAGATAACAACAGATTGTCAACT GAGATTGTTAAGATCTGGAACCCTATATTGGTAAGCTTATTTCTCAAACAAGTGATTTTAGTGATGCATGTGCTATAATT AGATTAACAGAGTTGTTAATTTTACTGTGTACTTTTCTCAAAGAAGTGAATTTAGTTGCTTGGTTGAGAATTGAGATGTA ACTCTTTTGTTTAGAATCAATCAGAATTGGGTCTTAATTTACTGTATACACCCCTAAACACCTTATACATTGATTGAATG GAAGCAGTGTTGTTAATTGTGGATGGCGGAAAGCCGAAATCCCGCCATACATGATAAATAATGGCAGAATATTGCGGCCA TATGGCGGGATATCGTCCGCCATGGCGGAAACCCGAATAGCCGCCATGAGAAATTGCCATGACGGATATTTGATAACATG GAATGGAAGGCACAACTGAATCTGAATCCTATTGTATGTTGTTTATCTTATGTTTGTAGGCTTGCTACCTGTTACAAGTT TCTTGGTTGTTTTACTGTGTTTAGAGACCTTTAGTTTCGATTGGATGGTCCAATTTGCATTGGAAATTTTTGCATGATGC TACATTATACTGCTTCATCATAGCTTATGTCCTCATTTTTTGAGTAATGAAGCTGATCTGTTTTGCATTGACTCAGTACC ACAATTCAGAAAAAAAGTTGATGGCTGTTATATTTGTATTTAGTTCGTAGATATGGTGTCAAGTACATGGGTCACTATAA AACCAGCCTATAGTAACACATCTTATTTTATTTGAATGTAATTTTCCGATAACTTATCTAGGTCATTTGTATTACGGTAG TTTCTCTTTTCCTCTTTTCAAAACTTCTAGGGCTGTTTTACTCTTTTTTTCTTAGTTCTTATGGCTCATTTCTTTTTGAA GAGTTTTTATTAGGATGACTAAATATTGACAAGCAGAAAGATTACGGGGAAACAACTCGCATGGATGCCAGTGGCAATTC TCTACCGTCCGCTGCCTCTGATGGAGTGAAGAGAAAGGTGTGCTATTTCTATGATCCAGAGGTTGGGAATTACTATTATG GGCAAGGTCATCCTATGAAGCCACATCGTATTCGCATGACACATGCTCTTCTTGCCCACTACGGATTGCTTCAGCATATG CAGGTCCACAAGCCATTTCCTGCTAGAGACAAGGACCTCTGTCGTTTTCATGCGGATGATTATGTTTCATTCCTTCGAAG CATAACCCCTGAAACACAGCAGGATCATCTGAGGCAACTCAAACGCTTTAATGTCGGTGAAGATTGTCCTGTCTTTGATG GCCTGTACTCTTACTGTCAAACTTACGCTGGAGGTTCAGTTGGGGGTGCTGTCAAGTTAAATCATGATTCATGTGATATT GCTGTCAATTGGGCTGGTGGGCTGCATCATGCCAAGAAGTGTGAGGCATCTGGATTTTGCTATGTCAATGATATAGTCCT CGCAATTTTAGAACTTCTTAAACAGCATGAGGTTTGTCTAACAGTTTATTTCCTTTTGTGTTGTTTTGTTTTTTTTTTGT TCCACCCCCCCTGCTTTAGAGGTATATTGATTTGTCTGAAATATTTATACTTCGATATCTCCTTTAGGATTTGTGGCAAA TAAGTATTTAAGCGGATATTGAGGGAGTGAAACTCCAATATGCAGAGTATATATTTGCATAATAGAGTGTTTCTCTATCT AAGATTCTTTTCTGTTAGATCCTCCTGGAACTGCCTCACAGGAACAATGCTAAGTTTAAGGGAAAACGAGCCCCTTTAAG TGCTCAAAAGAAGTTACCTTTCTCCTTCTGTAAACTCCCAATATCATGATCCTATGCCTATTATCAACCAGAATGCCCCC CCCCCCCTCCCAAGCAAAAAACAGAAAGAACGAAGCTTAATCAGTATAATTTCAAATTCACTTATGTTTCACTTTACCAT AGTAATATTATTAAAGAGTGCATCTGTTAAAATTCATTTTTCATAATCAGCCACTAGAGTCCTCCTCCACACACCTAAAT AAAAGTAAGTTTCGCATACCGATTTTACCCCCAATAGGAAACACTCCTACCATTTATAATCTTTAAAAAACTAGAATGCC CCCCCGCCCCCCAGCAAAAAAAAAAGAAGCTTAATCTCTATTAATTTCATATTCACTATTTTATACACCATAGGTAACTG AGAATAAATTTGTTTTTGAGAATGATATTGTAAAAGTTAGTTAAAAAATGAAGGTTGTTTCGATAAAATAAAGTAAAATA ACTTTTAGAGATAAAATTACTAGAACAGTTTTAACTTGTAACATAAAAGCATGGGAGAGACAATGATGGGTAATGTGGCA ATTTACTTTTTGAATGTGAATTTTCAAACTGAAAAGGAGGTCCCCTGTTAGTCTGTGACTTTAACTAAACTGAAGTTTGG GTCTCTCCAAAACAAATTTATTCTAATGGAAATCACAACCTGTTTAACAATTCTAATTCCAGTGCCTCCATAATGTAATC TTACTCACTGTAGAAGTTTAAACAAACAAGCACTTAGTTATTACCCCTTCTTCTGTGAATGAAATCTTGAAGTATTCAAT GATGGGGTAAAATGTAAGATTTCAAGCTTGCTTTTAAATTTGATTTGGGTGAAAGCTTTTGGGAGATAGTTATGAACTTT TGAAGTGTGTTTCAAACTTTTGTGTCTGTTGACTCTATTGCTATTTTAAAATGCTAATGTTGCATTTCTTGTAGCGTGTT CTATATGTGGACATTGATATCCACCATGGGGATGGTGTGGAGGAAGCTTTTTACACAACTGACAGAGTTATGACCGTTTC ATTCCATAAATTTGGTGACTATTTTCCTGGTACTGGGGATGTACGTGATATTGGATATGGAAAGGGAAAATATTATGCTC TTAATGTTCCACTTGATGATGGCATTGATGATGAGAGTTATCATTTCTTGTTCAAACCATTAGTAGGCAAAGTTATGGAA GTGTTTAAGCCGGGCGCAGTAGTCCTCCAGTGTGGTGCAGATTCTTTATCTGGAGACAGATTGGGATGTTTTAATCTTTC AATCAAGGGTCATGCCGAGTGTGTAAGATACATGAGATCATTCAATGTGCCCCTCTTGCTAGTGGGTGGCGGTGGCTACA CCATTCGTAATGTTGCTCGCTGCTGGTGCTATGAGGTAGAATGCTGTTTTAATTGATAAAATTATAGTCATTTATTTAAT GTGACATCATCAATATAAGGTGGTGTGGTTTATAGGGCTATCATATGTGAGTCAGGACATCTCAACCCTTAAGTAGAGTT ATTATCTAGAACTTTTAATATTTTCTCCTTCTCTCATATGTTAATTTTAAAAAGTGTGAACCGTTAACTTACCCTGGAAG TAATGATGTTCAAGAGGTCAAAGTAATATGGTACTTGGGTTATTATTTCATTTTGCTAGTCTTGAACTAGAAAATATAGA TTGAGATATTCTAAAGTCTCTCAGTATTCAATGTCACTTGCCATGTAGTTATTGTTTCTTACTTCTCAGGTTGTTCACAC TCCTTTAAAGTTTATGTGCCATTTGAGTCGTCGTTGCTTTCATCTTAATACCTAAAATATTATTTGTTATTTGTTAAGGC AGACAGGTGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCACAACATGAATATTATGAATATTTTGGTCCGGATTAT ACCCTTCATGTTGCACCAAGTAACATGGAAAACAAAAATTCCCATCATTTACTTGAAGAAGTTCGATCTAAGCTACTTGA GAATCTTTCCAAGCTGCAGCATGCTCCCAGTGTCCAATTCCAGGAAAGGCCTCCTGATTATGATCTTGGAGAGGTAAATT TCTAATGCTATTTATTTTATTATTTTTTTTGCCAGTTACTATTTTTTTTCACATGTGCTTGCTCTTAGTAGAAGATAATA ATTTCTTTTAGAAAGCAATTTTGAAGAGCTAACCACGAACATAGCTCGAAGAGAGAAAAAGTATTAAAAATGGTCTGAGC CTTTTTTTTTCTCTTTTTTTTTTGGGGGGGGGGGGGGGTAGAATGGTATCCTCAAATTTTTAAATTTGTGTTGGAAGATC CACTAAGTGCTGACCAAGATGCTAAAAGGATTCTTCAAATGTTTTACCTGCATTAATGGGGTTTTCCATGTATGGACCTG CGTACTTTCTCTTCCTGTTTCTCTTAAATTCACTGCAAATACCCTCCTAAAATTTGCGGAGCTTGCTGTGTTCCTCTGAT CCACCTTCAGGAATTAGAATGCATTTTCTAAGGAGGGTTATGGGTGAGATTTACCAACTGATCATCTTACTGGCCCCATC TAGTGGGAAAAGGCTTTGTTCATTATTGTTTTATTATCTCAATATCCTGTACAACAACTAGAGAAGAATCTTAATACTTA GGCTTATCTACGGAAAGCTCACTGATGGAGATACTACGGTCAAACCCTAGTTCTCAAAAACCTCAACTCTTATTCCTAAT AAAATTTACAGCACATCAATGTGAATAAAGATGAGTCCCATTTTTTGAACTAGCACAGCACATTATAACATTGGGTAACA GAGCAGTGAGAGGTTTGTACTTCTGTAGCATTTCATTAGTGTTAATCCTATTAAGAACAGTAGTCCGGAGTCCGGACAAA CTGTTAGACCATAGGGAGAGCTGTAGATTCCATATAAGTTTGTAAAAAAAAATCTCTGTTAGATGATTTAGTCATGGAAA GGGGAGCCTTGGCGCAATAGTTGGAGTTGCTGTCAAGTAACTTGGAGACCGATTTGAGTTGTTGATTGGTCTCATGCAAA TACAAGGTAAGGTTGCTGACAATAGACACGATTTATTTTATCCGTCCTTGGACCCTGTCATTGGTGGATTTGTTAGGTTG TAGGGAAAAGACAAATTAGTTATGGGCTTATAGTAGTTAAGGGCTATCAGAAAAAGCTTGGCTGATGTAGGTGAGACAAT GCATATCCATTAAACTCATAGGGATAATACTCCAAGTAATAAGTAGAGAATAGAGAGGATGTTTCCAGAAATATTTCAAC TCCTCCTAAAAGTAGGACAAATTATGATAAATTTACAAGAGAAAACAAATCCTGACTTTTATAATCCTTATCATAACTTC ATTTTGATTTTCATCATCTTGATAAAACTCATCCCAAAATTATATACATTCACAATTTTCAAGGCTGACGAAGATCATGA TGATGGAGATGAACGTTGGGATCCAGATTCTGACATGGACATTGATGTTGAACGGTATTTTGCTTTATCCTAAATTTAAA TACCATTATCATATGATTGACATGATCTCAGCTATTACCTCATTTATTAGTGAGCTTCGCCCAGGCAAAGTAAAGAAAGA AGTTGTTGAACCTCAGCTCAATGATCTGGTATGTGTTTTTGTTAGATTTTGAAGTATTTAATTGAAACTTATTAATTTCT TACTTAATAAGATTCTAATTTCCGTTGCACATTTCTGTTGGGAATTGTATATTAATCGACTTGCCTTTGCCACATCTCTT GACCCAATCTAGAATTAAAAAATTCATTACTTTTTTGTGGTATATTAATGTTACAACCATAAAAATTTACATATTAACAG ATCAACAATATCTCCAGTGTTTCGTAGCGCATTGCTCAAAGAAATAAAGCCTTATTTGTGAAGTAAAATCGTCTAACCTT CACTATTGAAATAGATAATATCAAAACCCAATAGAGTTTTCTACACCGCTCTGCCCCATTTATTTTTGTTCCATTTTTCA AGTTGCCCTATATTATAAGAGCAAAGTACGAGTAATCGGAGAGAGTGCATTGATATTCTGATTAATGTGTTTGCAGTTCA AGAATATATACACTCTAAACGGTTACAGTACTTCACTGACTTTCTACTAACCATATTCCTAACTGCATAGCTGACTGGAA CCAACTTCTAGGCTCAAGAAGCACTGACACCTCTGTACAATTTAGAGTTCGGGTGGTCGGACAATCCAACATTTATTCAA CCCGTATCATACAACCTTTTACAGTGTCTGATTTTTTTTTTTTTGTCTTGCTCAAACGCATCTTGGGCGCAGCTCAAACA CTTTCAAGATTGAGCCGACACCTCTTGACACTGAGTTTATAAAAAAAAATGATCTTTTTGAAAAGCCAACATATTTATAT ATTTTAAATTCTTAAAACATCATTTAGAAATCAAACCCATAAAATATCCTTTAAAATCATCTTGAGTTGTTTCAAAATTA TAAATCATCTTCATAAAATTGTGTTCTGTGTTGTCTACCTATCAAGAAATGGTTGCAAAGATGGATGAAAATCTTAACAG AGGGCTGAGATTCCCATGCATTCCTTGTATTAATTGACACCTACGCACAGCTATATAGGCTCTGGAAGCAGCTTTTCCTT GTATTATGCAATTCATTGGCATATATCATCATCGCTTGAGTAACTAGGAGCCGCATTTGTGCAATCCTTGGACAATTGAT ATACTTTCTGCCTCTGTAGGAAACCATTAATCTAAATTACACACATAAATTCATTATTTGATACTTGGTACTATTTGTAA TGCTGACTTACCATCCCAGGAGGACCAAAGAAGCAGTGGAGAGCAGTTGCGAGGCTCTGATACCGCCGTAGCTGAAACAT GCTTGAAGGTAAACCTAGTAAGATAAAGCACATGCATATAAATCAAGCATGTATGCAGACACAAGTATCATTGCATTTTA TTGGAAGTATCATTGTTGTGAACATTTTTATCGCTGAATTTGATTCTTACAGGCTTTAGATATTTGTTCTCAGCAAGTAG ATGAAGATAATGTGAAAGCTGAACAGAATATTGTGACTGATTCGGCCAGAGAGACTGATCTGAAGTGTTAAGTTAGGTTT TAACTGATTTGTTGTTGATGATTTAGTGATCCATATGTTCTGTCACATTTCCCAAATAATTGAGATGTAGCTGCTGTTTG GTTTTTTCGATGATCATTGTACATGCACAGTGGCATTTTCCTAATGTTTGCAAATTTAAACTTGTTTTATTACATGACAT TTTTTCCCTACCTAATTTTAATGTGACAGCATTTTTTGGTTACTCTATAATCTCAACATAATAAAGCTGATTAAGCTCTA ATGATATCAGAAAATAATTTCCCATGTTAAAGCAACCCCCAAACTCACTTTCTCTTTTGCTTCAACCTTGATCCACAACA CAACTAATTAATTGAGATAGCATTTCCATACACCCTCATATTTCTATAAACCCTCTGTTTGGTTTTATCAAATGTAGTAA TGTAGCATGCATTGTTTACATAGATAAATAAATATATATATCTATATATATATCCCTCAGTTTCATATTATAAGTAATAT TTTTTAAATATTTTTTTCCCAAAATATAAGTCACTTCAATATCTTCGAAGCATTAATTTTTTTGTTCATGTTTACCCTCA TATTTAATACTACTTCCGTTTTTATTAACTGTCAACTTTAAAGAAAAAAAAATTGTTCTTGTATATCTGTCAACTTAGAG ATTCAAGAAAACATTAAATGACGTTTTTCCAGGAAATGCTTGCAAGAACAATAAATGAGGAAAGATAAAATGCATTTTAA ATGGTGAAATAGGAAAACAAATAACATT
CDS sequence (LotjaGi1g1v0146200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCCAGTGGCAATTCTCTACCGTCCGCTGCCTCTGATGGAGTGAAGAGAAAGGTGTGCTATTTCTATGATCCAGA GGTTGGGAATTACTATTATGGGCAAGGTCATCCTATGAAGCCACATCGTATTCGCATGACACATGCTCTTCTTGCCCACT ACGGATTGCTTCAGCATATGCAGGTCCACAAGCCATTTCCTGCTAGAGACAAGGACCTCTGTCGTTTTCATGCGGATGAT TATGTTTCATTCCTTCGAAGCATAACCCCTGAAACACAGCAGGATCATCTGAGGCAACTCAAACGCTTTAATGTCGGTGA AGATTGTCCTGTCTTTGATGGCCTGTACTCTTACTGTCAAACTTACGCTGGAGGTTCAGTTGGGGGTGCTGTCAAGTTAA ATCATGATTCATGTGATATTGCTGTCAATTGGGCTGGTGGGCTGCATCATGCCAAGAAGTGTGAGGCATCTGGATTTTGC TATGTCAATGATATAGTCCTCGCAATTTTAGAACTTCTTAAACAGCATGAGCGTGTTCTATATGTGGACATTGATATCCA CCATGGGGATGGTGTGGAGGAAGCTTTTTACACAACTGACAGAGTTATGACCGTTTCATTCCATAAATTTGGTGACTATT TTCCTGGTACTGGGGATGTACGTGATATTGGATATGGAAAGGGAAAATATTATGCTCTTAATGTTCCACTTGATGATGGC ATTGATGATGAGAGTTATCATTTCTTGTTCAAACCATTAGTAGGCAAAGTTATGGAAGTGTTTAAGCCGGGCGCAGTAGT CCTCCAGTGTGGTGCAGATTCTTTATCTGGAGACAGATTGGGATGTTTTAATCTTTCAATCAAGGGTCATGCCGAGTGTG TAAGATACATGAGATCATTCAATGTGCCCCTCTTGCTAGTGGGTGGCGGTGGCTACACCATTCGTAATGTTGCTCGCTGC TGGTGCTATGAGACAGGTGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCACAACATGAATATTATGAATATTTTGG TCCGGATTATACCCTTCATGTTGCACCAAGTAACATGGAAAACAAAAATTCCCATCATTTACTTGAAGAAGTTCGATCTA AGCTACTTGAGAATCTTTCCAAGCTGCAGCATGCTCCCAGTGTCCAATTCCAGGAAAGGCCTCCTGATTATGATCTTGGA GAGGCTGACGAAGATCATGATGATGGAGATGAACGTTGGGATCCAGATTCTGACATGGACATTGATGTTGAACGTGAGCT TCGCCCAGGCAAAGTAAAGAAAGAAGTTGTTGAACCTCAGCTCAATGATCTGGAGGACCAAAGAAGCAGTGGAGAGCAGT TGCGAGGCTCTGATACCGCCGTAGCTGAAACATGCTTGAAGCAAGTAGATGAAGATAATGTGAAAGCTGAACAGAATATT GTGACTGATTCGGCCAGAGAGACTGATCTGAAGTGTTAA
Protein sequence (LotjaGi1g1v0146200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDASGNSLPSAASDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDKDLCRFHADD YVSFLRSITPETQQDHLRQLKRFNVGEDCPVFDGLYSYCQTYAGGSVGGAVKLNHDSCDIAVNWAGGLHHAKKCEASGFC YVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYGKGKYYALNVPLDDG IDDESYHFLFKPLVGKVMEVFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFNVPLLLVGGGGYTIRNVARC WCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSHHLLEEVRSKLLENLSKLQHAPSVQFQERPPDYDLG EADEDHDDGDERWDPDSDMDIDVERELRPGKVKKEVVEPQLNDLEDQRSSGEQLRGSDTAVAETCLKQVDEDNVKAEQNI VTDSARETDLKC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 4 | 484 | 481 | 2.3E-213 | ||
| PANTHER | 6 | 480 | 475 | 0.0 | – | |
| PANTHER | 6 | 480 | 475 | 0.0 | – | |
| Gene3D | 16 | 389 | 374 | 2.1E-165 | ||
| SUPERFAMILY | 18 | 382 | 365 | 2.45E-126 | ||
| Pfam | 37 | 325 | 289 | 5.9E-83 | ||
| PRINTS | 39 | 56 | 18 | 3.7E-65 | ||
| PRINTS | 72 | 90 | 19 | 3.7E-65 | ||
| PRINTS | 103 | 120 | 18 | 3.7E-65 | ||
| PRINTS | 124 | 144 | 21 | 3.7E-65 | ||
| PRINTS | 146 | 169 | 24 | 1.4E-23 | ||
| PRINTS | 165 | 181 | 17 | 3.7E-65 | ||
| PRINTS | 178 | 193 | 16 | 1.4E-23 | ||
| PRINTS | 224 | 237 | 14 | 3.7E-65 | ||
| PRINTS | 241 | 259 | 19 | 3.7E-65 | ||
| PRINTS | 263 | 273 | 11 | 1.4E-23 | ||
| MobiDBLite | 385 | 459 | 75 | - | – | |
| MobiDBLite | 401 | 417 | 17 | - | – | |
| MobiDBLite | 418 | 442 | 25 | - | – | |
| MobiDBLite | 443 | 457 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Histone deacetylase activity | Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes. | ||
| Biological process | Histone deacetylation | The modification of histones by removal of acetyl groups. |
Expression pattern of LotjaGi1g1v0146200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…