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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0146200 |
| Transcript ID | LotjaGi1g1v0146200.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:24764469..24771797) extracted from Lotus japonicus Gifu genome v1.2.
AGAATGGGGCTGAGTGTCATATTGACAAACCTTAAGGGAGGGGAGTGTATTTTACTCTTTAAAATTTGGTGAAACTTACG GGCGTGCGTTCATTTTGTCGTTTCATTTCTCTCATCGTGAGATTGTTCGTTATTTCGCTAGCTAGGTTTCTCCTTCATCT TCTCTTCGATTCTGATTCATTCAGTGTTTTCTTCTCTTTCTCGATTCCCCCTCCTTTCCCTGATTTTGTTAAAATATTTT TGGAATTGCAGATAACAACAGATTGTCAACTGAGATTGTTAAGATCTGGAACCCTATATTGGTAAGCTTATTTCTCAAAC AAGTGATTTTAGTGATGCATGTGCTATAATTAGATTAACAGAGTTGTTAATTTTACTGTGTACTTTTCTCAAAGAAGTGA ATTTAGTTGCTTGGTTGAGAATTGAGATGTAACTCTTTTGTTTAGAATCAATCAGAATTGGGTCTTAATTTACTGTATAC ACCCCTAAACACCTTATACATTGATTGAATGGAAGCAGTGTTGTTAATTGTGGATGGCGGAAAGCCGAAATCCCGCCATA CATGATAAATAATGGCAGAATATTGCGGCCATATGGCGGGATATCGTCCGCCATGGCGGAAACCCGAATAGCCGCCATGA GAAATTGCCATGACGGATATTTGATAACATGGAATGGAAGGCACAACTGAATCTGAATCCTATTGTATGTTGTTTATCTT ATGTTTGTAGGCTTGCTACCTGTTACAAGTTTCTTGGTTGTTTTACTGTGTTTAGAGACCTTTAGTTTCGATTGGATGGT CCAATTTGCATTGGAAATTTTTGCATGATGCTACATTATACTGCTTCATCATAGCTTATGTCCTCATTTTTTGAGTAATG AAGCTGATCTGTTTTGCATTGACTCAGTACCACAATTCAGAAAAAAAGTTGATGGCTGTTATATTTGTATTTAGTTCGTA GATATGGTGTCAAGTACATGGGTCACTATAAAACCAGCCTATAGTAACACATCTTATTTTATTTGAATGTAATTTTCCGA TAACTTATCTAGGTCATTTGTATTACGGTAGTTTCTCTTTTCCTCTTTTCAAAACTTCTAGGGCTGTTTTACTCTTTTTT TCTTAGTTCTTATGGCTCATTTCTTTTTGAAGAGTTTTTATTAGGATGACTAAATATTGACAAGCAGAAAGATTACGGGG AAACAACTCGCATGGATGCCAGTGGCAATTCTCTACCGTCCGCTGCCTCTGATGGAGTGAAGAGAAAGGTGTGCTATTTC TATGATCCAGAGGTTGGGAATTACTATTATGGGCAAGGTCATCCTATGAAGCCACATCGTATTCGCATGACACATGCTCT TCTTGCCCACTACGGATTGCTTCAGCATATGCAGGTCCACAAGCCATTTCCTGCTAGAGACAAGGACCTCTGTCGTTTTC ATGCGGATGATTATGTTTCATTCCTTCGAAGCATAACCCCTGAAACACAGCAGGATCATCTGAGGCAACTCAAACGCTTT AATGTCGGTGAAGATTGTCCTGTCTTTGATGGCCTGTACTCTTACTGTCAAACTTACGCTGGAGGTTCAGTTGGGGGTGC TGTCAAGTTAAATCATGATTCATGTGATATTGCTGTCAATTGGGCTGGTGGGCTGCATCATGCCAAGAAGTGTGAGGCAT CTGGATTTTGCTATGTCAATGATATAGTCCTCGCAATTTTAGAACTTCTTAAACAGCATGAGGTTTGTCTAACAGTTTAT TTCCTTTTGTGTTGTTTTGTTTTTTTTTTGTTCCACCCCCCCTGCTTTAGAGGTATATTGATTTGTCTGAAATATTTATA CTTCGATATCTCCTTTAGGATTTGTGGCAAATAAGTATTTAAGCGGATATTGAGGGAGTGAAACTCCAATATGCAGAGTA TATATTTGCATAATAGAGTGTTTCTCTATCTAAGATTCTTTTCTGTTAGATCCTCCTGGAACTGCCTCACAGGAACAATG CTAAGTTTAAGGGAAAACGAGCCCCTTTAAGTGCTCAAAAGAAGTTACCTTTCTCCTTCTGTAAACTCCCAATATCATGA TCCTATGCCTATTATCAACCAGAATGCCCCCCCCCCCCTCCCAAGCAAAAAACAGAAAGAACGAAGCTTAATCAGTATAA TTTCAAATTCACTTATGTTTCACTTTACCATAGTAATATTATTAAAGAGTGCATCTGTTAAAATTCATTTTTCATAATCA GCCACTAGAGTCCTCCTCCACACACCTAAATAAAAGTAAGTTTCGCATACCGATTTTACCCCCAATAGGAAACACTCCTA CCATTTATAATCTTTAAAAAACTAGAATGCCCCCCCGCCCCCCAGCAAAAAAAAAAGAAGCTTAATCTCTATTAATTTCA TATTCACTATTTTATACACCATAGGTAACTGAGAATAAATTTGTTTTTGAGAATGATATTGTAAAAGTTAGTTAAAAAAT GAAGGTTGTTTCGATAAAATAAAGTAAAATAACTTTTAGAGATAAAATTACTAGAACAGTTTTAACTTGTAACATAAAAG CATGGGAGAGACAATGATGGGTAATGTGGCAATTTACTTTTTGAATGTGAATTTTCAAACTGAAAAGGAGGTCCCCTGTT AGTCTGTGACTTTAACTAAACTGAAGTTTGGGTCTCTCCAAAACAAATTTATTCTAATGGAAATCACAACCTGTTTAACA ATTCTAATTCCAGTGCCTCCATAATGTAATCTTACTCACTGTAGAAGTTTAAACAAACAAGCACTTAGTTATTACCCCTT CTTCTGTGAATGAAATCTTGAAGTATTCAATGATGGGGTAAAATGTAAGATTTCAAGCTTGCTTTTAAATTTGATTTGGG TGAAAGCTTTTGGGAGATAGTTATGAACTTTTGAAGTGTGTTTCAAACTTTTGTGTCTGTTGACTCTATTGCTATTTTAA AATGCTAATGTTGCATTTCTTGTAGCGTGTTCTATATGTGGACATTGATATCCACCATGGGGATGGTGTGGAGGAAGCTT TTTACACAACTGACAGAGTTATGACCGTTTCATTCCATAAATTTGGTGACTATTTTCCTGGTACTGGGGATGTACGTGAT ATTGGATATGGAAAGGGAAAATATTATGCTCTTAATGTTCCACTTGATGATGGCATTGATGATGAGAGTTATCATTTCTT GTTCAAACCATTAGTAGGCAAAGTTATGGAAGTGTTTAAGCCGGGCGCAGTAGTCCTCCAGTGTGGTGCAGATTCTTTAT CTGGAGACAGATTGGGATGTTTTAATCTTTCAATCAAGGGTCATGCCGAGTGTGTAAGATACATGAGATCATTCAATGTG CCCCTCTTGCTAGTGGGTGGCGGTGGCTACACCATTCGTAATGTTGCTCGCTGCTGGTGCTATGAGGTAGAATGCTGTTT TAATTGATAAAATTATAGTCATTTATTTAATGTGACATCATCAATATAAGGTGGTGTGGTTTATAGGGCTATCATATGTG AGTCAGGACATCTCAACCCTTAAGTAGAGTTATTATCTAGAACTTTTAATATTTTCTCCTTCTCTCATATGTTAATTTTA AAAAGTGTGAACCGTTAACTTACCCTGGAAGTAATGATGTTCAAGAGGTCAAAGTAATATGGTACTTGGGTTATTATTTC ATTTTGCTAGTCTTGAACTAGAAAATATAGATTGAGATATTCTAAAGTCTCTCAGTATTCAATGTCACTTGCCATGTAGT TATTGTTTCTTACTTCTCAGGTTGTTCACACTCCTTTAAAGTTTATGTGCCATTTGAGTCGTCGTTGCTTTCATCTTAAT ACCTAAAATATTATTTGTTATTTGTTAAGGCAGACAGGTGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCACAACA TGAATATTATGAATATTTTGGTCCGGATTATACCCTTCATGTTGCACCAAGTAACATGGAAAACAAAAATTCCCATCATT TACTTGAAGAAGTTCGATCTAAGCTACTTGAGAATCTTTCCAAGCTGCAGCATGCTCCCAGTGTCCAATTCCAGGAAAGG CCTCCTGATTATGATCTTGGAGAGGTAAATTTCTAATGCTATTTATTTTATTATTTTTTTTGCCAGTTACTATTTTTTTT CACATGTGCTTGCTCTTAGTAGAAGATAATAATTTCTTTTAGAAAGCAATTTTGAAGAGCTAACCACGAACATAGCTCGA AGAGAGAAAAAGTATTAAAAATGGTCTGAGCCTTTTTTTTTCTCTTTTTTTTTTGGGGGGGGGGGGGGGTAGAATGGTAT CCTCAAATTTTTAAATTTGTGTTGGAAGATCCACTAAGTGCTGACCAAGATGCTAAAAGGATTCTTCAAATGTTTTACCT GCATTAATGGGGTTTTCCATGTATGGACCTGCGTACTTTCTCTTCCTGTTTCTCTTAAATTCACTGCAAATACCCTCCTA AAATTTGCGGAGCTTGCTGTGTTCCTCTGATCCACCTTCAGGAATTAGAATGCATTTTCTAAGGAGGGTTATGGGTGAGA TTTACCAACTGATCATCTTACTGGCCCCATCTAGTGGGAAAAGGCTTTGTTCATTATTGTTTTATTATCTCAATATCCTG TACAACAACTAGAGAAGAATCTTAATACTTAGGCTTATCTACGGAAAGCTCACTGATGGAGATACTACGGTCAAACCCTA GTTCTCAAAAACCTCAACTCTTATTCCTAATAAAATTTACAGCACATCAATGTGAATAAAGATGAGTCCCATTTTTTGAA CTAGCACAGCACATTATAACATTGGGTAACAGAGCAGTGAGAGGTTTGTACTTCTGTAGCATTTCATTAGTGTTAATCCT ATTAAGAACAGTAGTCCGGAGTCCGGACAAACTGTTAGACCATAGGGAGAGCTGTAGATTCCATATAAGTTTGTAAAAAA AAATCTCTGTTAGATGATTTAGTCATGGAAAGGGGAGCCTTGGCGCAATAGTTGGAGTTGCTGTCAAGTAACTTGGAGAC CGATTTGAGTTGTTGATTGGTCTCATGCAAATACAAGGTAAGGTTGCTGACAATAGACACGATTTATTTTATCCGTCCTT GGACCCTGTCATTGGTGGATTTGTTAGGTTGTAGGGAAAAGACAAATTAGTTATGGGCTTATAGTAGTTAAGGGCTATCA GAAAAAGCTTGGCTGATGTAGGTGAGACAATGCATATCCATTAAACTCATAGGGATAATACTCCAAGTAATAAGTAGAGA ATAGAGAGGATGTTTCCAGAAATATTTCAACTCCTCCTAAAAGTAGGACAAATTATGATAAATTTACAAGAGAAAACAAA TCCTGACTTTTATAATCCTTATCATAACTTCATTTTGATTTTCATCATCTTGATAAAACTCATCCCAAAATTATATACAT TCACAATTTTCAAGGCTGACGAAGATCATGATGATGGAGATGAACGTTGGGATCCAGATTCTGACATGGACATTGATGTT GAACGGTATTTTGCTTTATCCTAAATTTAAATACCATTATCATATGATTGACATGATCTCAGCTATTACCTCATTTATTA GTGAGCTTCGCCCAGGCAAAGTAAAGAAAGAAGTTGTTGAACCTCAGCTCAATGATCTGGTATGTGTTTTTGTTAGATTT TGAAGTATTTAATTGAAACTTATTAATTTCTTACTTAATAAGATTCTAATTTCCGTTGCACATTTCTGTTGGGAATTGTA TATTAATCGACTTGCCTTTGCCACATCTCTTGACCCAATCTAGAATTAAAAAATTCATTACTTTTTTGTGGTATATTAAT GTTACAACCATAAAAATTTACATATTAACAGATCAACAATATCTCCAGTGTTTCGTAGCGCATTGCTCAAAGAAATAAAG CCTTATTTGTGAAGTAAAATCGTCTAACCTTCACTATTGAAATAGATAATATCAAAACCCAATAGAGTTTTCTACACCGC TCTGCCCCATTTATTTTTGTTCCATTTTTCAAGTTGCCCTATATTATAAGAGCAAAGTACGAGTAATCGGAGAGAGTGCA TTGATATTCTGATTAATGTGTTTGCAGTTCAAGAATATATACACTCTAAACGGTTACAGTACTTCACTGACTTTCTACTA ACCATATTCCTAACTGCATAGCTGACTGGAACCAACTTCTAGGCTCAAGAAGCACTGACACCTCTGTACAATTTAGAGTT CGGGTGGTCGGACAATCCAACATTTATTCAACCCGTATCATACAACCTTTTACAGTGTCTGATTTTTTTTTTTTTGTCTT GCTCAAACGCATCTTGGGCGCAGCTCAAACACTTTCAAGATTGAGCCGACACCTCTTGACACTGAGTTTATAAAAAAAAA TGATCTTTTTGAAAAGCCAACATATTTATATATTTTAAATTCTTAAAACATCATTTAGAAATCAAACCCATAAAATATCC TTTAAAATCATCTTGAGTTGTTTCAAAATTATAAATCATCTTCATAAAATTGTGTTCTGTGTTGTCTACCTATCAAGAAA TGGTTGCAAAGATGGATGAAAATCTTAACAGAGGGCTGAGATTCCCATGCATTCCTTGTATTAATTGACACCTACGCACA GCTATATAGGCTCTGGAAGCAGCTTTTCCTTGTATTATGCAATTCATTGGCATATATCATCATCGCTTGAGTAACTAGGA GCCGCATTTGTGCAATCCTTGGACAATTGATATACTTTCTGCCTCTGTAGGAAACCATTAATCTAAATTACACACATAAA TTCATTATTTGATACTTGGTACTATTTGTAATGCTGACTTACCATCCCAGGAGGACCAAAGAAGCAGTGGAGAGCAGTTG CGAGGCTCTGATACCGCCGTAGCTGAAACATGCTTGAAGGTAAACCTAGTAAGATAAAGCACATGCATATAAATCAAGCA TGTATGCAGACACAAGTATCATTGCATTTTATTGGAAGTATCATTGTTGTGAACATTTTTATCGCTGAATTTGATTCTTA CAGGCTTTAGATATTTGTTCTCAGCAAGTAGATGAAGATAATGTGAAAGCTGAACAGAATATTGTGACTGATTCGGCCAG AGAGACTGATCTGAAGTGTTAAGTTAGGTTTTAACTGATTTGTTGTTGATGATTTAGTGATCCATATGTTCTGTCACATT TCCCAAATAATTGAGATGTAGCTGCTGTTTGGTTTTTTCGATGATCATTGTACATGCACAGTGGCATTTTCCTAATGTTT GCAAATTTAAACTTGTTTTATTACATGACATTTTTTCCCTACCTAATTT
CDS sequence (LotjaGi1g1v0146200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCCAGTGGCAATTCTCTACCGTCCGCTGCCTCTGATGGAGTGAAGAGAAAGGTGTGCTATTTCTATGATCCAGA GGTTGGGAATTACTATTATGGGCAAGGTCATCCTATGAAGCCACATCGTATTCGCATGACACATGCTCTTCTTGCCCACT ACGGATTGCTTCAGCATATGCAGGTCCACAAGCCATTTCCTGCTAGAGACAAGGACCTCTGTCGTTTTCATGCGGATGAT TATGTTTCATTCCTTCGAAGCATAACCCCTGAAACACAGCAGGATCATCTGAGGCAACTCAAACGCTTTAATGTCGGTGA AGATTGTCCTGTCTTTGATGGCCTGTACTCTTACTGTCAAACTTACGCTGGAGGTTCAGTTGGGGGTGCTGTCAAGTTAA ATCATGATTCATGTGATATTGCTGTCAATTGGGCTGGTGGGCTGCATCATGCCAAGAAGTGTGAGGCATCTGGATTTTGC TATGTCAATGATATAGTCCTCGCAATTTTAGAACTTCTTAAACAGCATGAGCGTGTTCTATATGTGGACATTGATATCCA CCATGGGGATGGTGTGGAGGAAGCTTTTTACACAACTGACAGAGTTATGACCGTTTCATTCCATAAATTTGGTGACTATT TTCCTGGTACTGGGGATGTACGTGATATTGGATATGGAAAGGGAAAATATTATGCTCTTAATGTTCCACTTGATGATGGC ATTGATGATGAGAGTTATCATTTCTTGTTCAAACCATTAGTAGGCAAAGTTATGGAAGTGTTTAAGCCGGGCGCAGTAGT CCTCCAGTGTGGTGCAGATTCTTTATCTGGAGACAGATTGGGATGTTTTAATCTTTCAATCAAGGGTCATGCCGAGTGTG TAAGATACATGAGATCATTCAATGTGCCCCTCTTGCTAGTGGGTGGCGGTGGCTACACCATTCGTAATGTTGCTCGCTGC TGGTGCTATGAGACAGGTGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCACAACATGAATATTATGAATATTTTGG TCCGGATTATACCCTTCATGTTGCACCAAGTAACATGGAAAACAAAAATTCCCATCATTTACTTGAAGAAGTTCGATCTA AGCTACTTGAGAATCTTTCCAAGCTGCAGCATGCTCCCAGTGTCCAATTCCAGGAAAGGCCTCCTGATTATGATCTTGGA GAGGCTGACGAAGATCATGATGATGGAGATGAACGTTGGGATCCAGATTCTGACATGGACATTGATGTTGAACGTGAGCT TCGCCCAGGCAAAGTAAAGAAAGAAGTTGTTGAACCTCAGCTCAATGATCTGGAGGACCAAAGAAGCAGTGGAGAGCAGT TGCGAGGCTCTGATACCGCCGTAGCTGAAACATGCTTGAAGGCTTTAGATATTTGTTCTCAGCAAGTAGATGAAGATAAT GTGAAAGCTGAACAGAATATTGTGACTGATTCGGCCAGAGAGACTGATCTGAAGTGTTAA
Protein sequence (LotjaGi1g1v0146200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDASGNSLPSAASDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDKDLCRFHADD YVSFLRSITPETQQDHLRQLKRFNVGEDCPVFDGLYSYCQTYAGGSVGGAVKLNHDSCDIAVNWAGGLHHAKKCEASGFC YVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYGKGKYYALNVPLDDG IDDESYHFLFKPLVGKVMEVFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFNVPLLLVGGGGYTIRNVARC WCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSHHLLEEVRSKLLENLSKLQHAPSVQFQERPPDYDLG EADEDHDDGDERWDPDSDMDIDVERELRPGKVKKEVVEPQLNDLEDQRSSGEQLRGSDTAVAETCLKALDICSQQVDEDN VKAEQNIVTDSARETDLKC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 4 | 470 | 467 | 2.4E-213 | ||
| PANTHER | 6 | 489 | 484 | 0.0 | – | |
| PANTHER | 6 | 489 | 484 | 0.0 | – | |
| Gene3D | 16 | 389 | 374 | 2.2E-165 | ||
| SUPERFAMILY | 18 | 382 | 365 | 2.54E-126 | ||
| Pfam | 37 | 325 | 289 | 6.2E-83 | ||
| PRINTS | 39 | 56 | 18 | 4.0E-65 | ||
| PRINTS | 72 | 90 | 19 | 4.0E-65 | ||
| PRINTS | 103 | 120 | 18 | 4.0E-65 | ||
| PRINTS | 124 | 144 | 21 | 4.0E-65 | ||
| PRINTS | 146 | 169 | 24 | 1.5E-23 | ||
| PRINTS | 165 | 181 | 17 | 4.0E-65 | ||
| PRINTS | 178 | 193 | 16 | 1.5E-23 | ||
| PRINTS | 224 | 237 | 14 | 4.0E-65 | ||
| PRINTS | 241 | 259 | 19 | 4.0E-65 | ||
| PRINTS | 263 | 273 | 11 | 1.5E-23 | ||
| MobiDBLite | 385 | 419 | 35 | - | – | |
| MobiDBLite | 401 | 417 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Histone deacetylase activity | Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes. | ||
| Biological process | Histone deacetylation | The modification of histones by removal of acetyl groups. |
Expression pattern of LotjaGi1g1v0146200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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