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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0146200 |
| Transcript ID | LotjaGi1g1v0146200.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|A0A151RPJ3|A0A151RPJ3_CAJCA Histone deacetylase; Found in the gene: LotjaGi1g1v0146200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:24767409..24770586) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATGCCAGTGGCAATTCTCTACCGTCCGCTGCCTCTGATGGAGTGAAGAGAAAGGTGTGCTATTTCTATGATCCAGA GGTTGGGAATTACTATTATGGGCAAGGTCATCCTATGAAGCCACATCGTATTCGCATGACACATGCTCTTCTTGCCCACT ACGGATTGCTTCAGCATATGCAGGTCCACAAGCCATTTCCTGCTAGAGACAAGGACCTCTGTCGTTTTCATGCGGATGAT TATGTTTCATTCCTTCGAAGCATAACCCCTGAAACACAGCAGGATCATCTGAGGCAACTCAAACGCTTTAATGTCGGTGA AGATTGTCCTGTCTTTGATGGCCTGTACTCTTACTGTCAAACTTACGCTGGAGGTTCAGTTGGGGGTGCTGTCAAGTTAA ATCATGATTCATGTGATATTGCTGTCAATTGGGCTGGTGGGCTGCATCATGCCAAGAAGTGTGAGGCATCTGGATTTTGC TATGTCAATGATATAGTCCTCGCAATTTTAGAACTTCTTAAACAGCATGAGGTTTGTCTAACAGTTTATTTCCTTTTGTG TTGTTTTGTTTTTTTTTTGTTCCACCCCCCCTGCTTTAGAGGTATATTGATTTGTCTGAAATATTTATACTTCGATATCT CCTTTAGGATTTGTGGCAAATAAGTATTTAAGCGGATATTGAGGGAGTGAAACTCCAATATGCAGAGTATATATTTGCAT AATAGAGTGTTTCTCTATCTAAGATTCTTTTCTGTTAGATCCTCCTGGAACTGCCTCACAGGAACAATGCTAAGTTTAAG GGAAAACGAGCCCCTTTAAGTGCTCAAAAGAAGTTACCTTTCTCCTTCTGTAAACTCCCAATATCATGATCCTATGCCTA TTATCAACCAGAATGCCCCCCCCCCCCTCCCAAGCAAAAAACAGAAAGAACGAAGCTTAATCAGTATAATTTCAAATTCA CTTATGTTTCACTTTACCATAGTAATATTATTAAAGAGTGCATCTGTTAAAATTCATTTTTCATAATCAGCCACTAGAGT CCTCCTCCACACACCTAAATAAAAGTAAGTTTCGCATACCGATTTTACCCCCAATAGGAAACACTCCTACCATTTATAAT CTTTAAAAAACTAGAATGCCCCCCCGCCCCCCAGCAAAAAAAAAAGAAGCTTAATCTCTATTAATTTCATATTCACTATT TTATACACCATAGGTAACTGAGAATAAATTTGTTTTTGAGAATGATATTGTAAAAGTTAGTTAAAAAATGAAGGTTGTTT CGATAAAATAAAGTAAAATAACTTTTAGAGATAAAATTACTAGAACAGTTTTAACTTGTAACATAAAAGCATGGGAGAGA CAATGATGGGTAATGTGGCAATTTACTTTTTGAATGTGAATTTTCAAACTGAAAAGGAGGTCCCCTGTTAGTCTGTGACT TTAACTAAACTGAAGTTTGGGTCTCTCCAAAACAAATTTATTCTAATGGAAATCACAACCTGTTTAACAATTCTAATTCC AGTGCCTCCATAATGTAATCTTACTCACTGTAGAAGTTTAAACAAACAAGCACTTAGTTATTACCCCTTCTTCTGTGAAT GAAATCTTGAAGTATTCAATGATGGGGTAAAATGTAAGATTTCAAGCTTGCTTTTAAATTTGATTTGGGTGAAAGCTTTT GGGAGATAGTTATGAACTTTTGAAGTGTGTTTCAAACTTTTGTGTCTGTTGACTCTATTGCTATTTTAAAATGCTAATGT TGCATTTCTTGTAGCGTGTTCTATATGTGGACATTGATATCCACCATGGGGATGGTGTGGAGGAAGCTTTTTACACAACT GACAGAGTTATGACCGTTTCATTCCATAAATTTGGTGACTATTTTCCTGGTACTGGGGATGTACGTGATATTGGATATGG AAAGGGAAAATATTATGCTCTTAATGTTCCACTTGATGATGGCATTGATGATGAGAGTTATCATTTCTTGTTCAAACCAT TAGTAGGCAAAGTTATGGAAGTGTTTAAGCCGGGCGCAGTAGTCCTCCAGTGTGGTGCAGATTCTTTATCTGGAGACAGA TTGGGATGTTTTAATCTTTCAATCAAGGGTCATGCCGAGTGTGTAAGATACATGAGATCATTCAATGTGCCCCTCTTGCT AGTGGGTGGCGGTGGCTACACCATTCGTAATGTTGCTCGCTGCTGGTGCTATGAGGTAGAATGCTGTTTTAATTGATAAA ATTATAGTCATTTATTTAATGTGACATCATCAATATAAGGTGGTGTGGTTTATAGGGCTATCATATGTGAGTCAGGACAT CTCAACCCTTAAGTAGAGTTATTATCTAGAACTTTTAATATTTTCTCCTTCTCTCATATGTTAATTTTAAAAAGTGTGAA CCGTTAACTTACCCTGGAAGTAATGATGTTCAAGAGGTCAAAGTAATATGGTACTTGGGTTATTATTTCATTTTGCTAGT CTTGAACTAGAAAATATAGATTGAGATATTCTAAAGTCTCTCAGTATTCAATGTCACTTGCCATGTAGTTATTGTTTCTT ACTTCTCAGGTTGTTCACACTCCTTTAAAGTTTATGTGCCATTTGAGTCGTCGTTGCTTTCATCTTAATACCTAAAATAT TATTTGTTATTTGTTAAGGCAGACAGGTGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCACAACATGAATATTATG AATATTTTGGTCCGGATTATACCCTTCATGTTGCACCAAGTAACATGGAAAACAAAAATTCCCATCATTTACTTGAAGAA GTTCGATCTAAGCTACTTGAGAATCTTTCCAAGCTGCAGCATGCTCCCAGTGTCCAATTCCAGGAAAGGCCTCCTGATTA TGATCTTGGAGAGGTAAATTTCTAATGCTATTTATTTTATTATTTTTTTTGCCAGTTACTATTTTTTTTCACATGTGCTT GCTCTTAGTAGAAGATAATAATTTCTTTTAGAAAGCAATTTTGAAGAGCTAACCACGAACATAGCTCGAAGAGAGAAAAA GTATTAAAAATGGTCTGAGCCTTTTTTTTTCTCTTTTTTTTTTGGGGGGGGGGGGGGGTAGAATGGTATCCTCAAATTTT TAAATTTGTGTTGGAAGATCCACTAAGTGCTGACCAAGATGCTAAAAGGATTCTTCAA
CDS sequence (LotjaGi1g1v0146200.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCCAGTGGCAATTCTCTACCGTCCGCTGCCTCTGATGGAGTGAAGAGAAAGGTGTGCTATTTCTATGATCCAGA GGTTGGGAATTACTATTATGGGCAAGGTCATCCTATGAAGCCACATCGTATTCGCATGACACATGCTCTTCTTGCCCACT ACGGATTGCTTCAGCATATGCAGGTCCACAAGCCATTTCCTGCTAGAGACAAGGACCTCTGTCGTTTTCATGCGGATGAT TATGTTTCATTCCTTCGAAGCATAACCCCTGAAACACAGCAGGATCATCTGAGGCAACTCAAACGCTTTAATGTCGGTGA AGATTGTCCTGTCTTTGATGGCCTGTACTCTTACTGTCAAACTTACGCTGGAGGTTCAGTTGGGGGTGCTGTCAAGTTAA ATCATGATTCATGTGATATTGCTGTCAATTGGGCTGGTGGGCTGCATCATGCCAAGAAGTGTGAGGCATCTGGATTTTGC TATGTCAATGATATAGTCCTCGCAATTTTAGAACTTCTTAAACAGCATGAGCGTGTTCTATATGTGGACATTGATATCCA CCATGGGGATGGTGTGGAGGAAGCTTTTTACACAACTGACAGAGTTATGACCGTTTCATTCCATAAATTTGGTGACTATT TTCCTGGTACTGGGGATGTACGTGATATTGGATATGGAAAGGGAAAATATTATGCTCTTAATGTTCCACTTGATGATGGC ATTGATGATGAGAGTTATCATTTCTTGTTCAAACCATTAGTAGGCAAAGTTATGGAAGTGTTTAAGCCGGGCGCAGTAGT CCTCCAGTGTGGTGCAGATTCTTTATCTGGAGACAGATTGGGATGTTTTAATCTTTCAATCAAGGGTCATGCCGAGTGTG TAAGATACATGAGATCATTCAATGTGCCCCTCTTGCTAGTGGGTGGCGGTGGCTACACCATTCGTAATGTTGCTCGCTGC TGGTGCTATGAGACAGGTGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCACAACATGAATATTATGAATATTTTGG TCCGGATTATACCCTTCATGTTGCACCAAGTAACATGGAAAACAAAAATTCCCATCATTTACTTGAAGAAGTTCGATCTA AGCTACTTGAGAATCTTTCCAAGCTGCAGCATGCTCCCAGTGTCCAATTCCAGGAAAGGCCTCCTGATTATGATCTTGGA GAGAAGTGCTGA
Protein sequence (LotjaGi1g1v0146200.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDASGNSLPSAASDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDKDLCRFHADD YVSFLRSITPETQQDHLRQLKRFNVGEDCPVFDGLYSYCQTYAGGSVGGAVKLNHDSCDIAVNWAGGLHHAKKCEASGFC YVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYGKGKYYALNVPLDDG IDDESYHFLFKPLVGKVMEVFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFNVPLLLVGGGGYTIRNVARC WCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSHHLLEEVRSKLLENLSKLQHAPSVQFQERPPDYDLG EKC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 4 | 402 | 399 | 2.7E-211 | ||
| PANTHER | 6 | 402 | 397 | 9.3E-290 | – | |
| PANTHER | 6 | 402 | 397 | 9.3E-290 | – | |
| Gene3D | 16 | 389 | 374 | 1.0E-165 | ||
| SUPERFAMILY | 18 | 382 | 365 | 1.2E-126 | ||
| Pfam | 37 | 325 | 289 | 3.3E-83 | ||
| PRINTS | 39 | 56 | 18 | 1.1E-65 | ||
| PRINTS | 72 | 90 | 19 | 1.1E-65 | ||
| PRINTS | 103 | 120 | 18 | 1.1E-65 | ||
| PRINTS | 124 | 144 | 21 | 1.1E-65 | ||
| PRINTS | 146 | 169 | 24 | 8.4E-24 | ||
| PRINTS | 165 | 181 | 17 | 1.1E-65 | ||
| PRINTS | 178 | 193 | 16 | 8.4E-24 | ||
| PRINTS | 224 | 237 | 14 | 1.1E-65 | ||
| PRINTS | 241 | 259 | 19 | 1.1E-65 | ||
| PRINTS | 263 | 273 | 11 | 8.4E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Histone deacetylase activity | Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes. | ||
| Biological process | Histone deacetylation | The modification of histones by removal of acetyl groups. |
Expression pattern of LotjaGi1g1v0146200.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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