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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0688700 |
| Transcript ID | LotjaGi1g1v0688700.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp|O82413|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7KFU0|K7KFU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125618349..125627346) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCTGCAACTCCACTATCATCTTCCTTCCTCACCCTGCAACCGCGCTTCAACTCCTACATCAACCCTCTCTTCCGTTC ACTCACCTACCAACTCAATGGCAACTTCTCCACAGTCAGACTCCACTCCGCACTTCCCGGCGCGGCGGAGACCGACTCTC CCACCGGCGGCCGAACCGGCGCCTTAACTCCCGGCCCTTCTGTCCCCCGTGACGTGCAGAAAATCGACGTCAACCCTCCC AAGGGGACACGTGACTTCCCGCCTGAAGACATGCGCTTGCGCAACTGGCTCTTCAACCATTTCAAAGAGGTATCCGTGTG TACTCAATTTGCTCATGCTCAATGTTATGCTGCTTGATTCATGGTTTTGAATGTTAAGAATATGATTTTTTCATCTGGGT CGTTGCGAGTTTCAGGTTTCACGGTTGTATGGATTTGAGGAGGTTGATTTTCCAGTGCTTGAGTCGGAGGCATTGTATAC TAGGAAAGCAGGGGAGGAGATTAAGGACCAGGTAACCATTTTCTTCACTTCACTGTTCCCTTTACCATGAGAAGCTGAGC TAGTGCATAGGTACATAGAGGTGATGCATTTATAGGTTATTCTAGCCTGGTCAATTTATGTGGGTTTGATTGAATTTTCG CTCCAGCCACGATTGCTTATTTTACTTTTAGTTGAGTCCACTATACCTCATATTTATATTATTTCAAGGTCATGGCAATA TTCAAGTTAATGAATGAAAGAGAAAATATAAATTTTTAGTCAAAAAGCAAGTAGAAAGAGAATAATCAACCGTTGCTTAA ATAAGCAATGTTGCTAAAATTTACGCAACAAGAACTGCCACGTCATGTTGCTCCAAAATAAGCAATGCTGCTTAAGTGCT CCAACTGAATTAAGCAACCTCCATTGGAGATGCTCTTACTTGTGTACGACTGTGACATAAACCCATCAGCCTTATTTGCG GGGATAAATGATATCAGTGGGCAATGCGGATGTTAATTTTGCCCCATTTGTTGGTTTAACATTCCTTGTGTCAAGCTTAT GTTTGGTTGGATGAAAATGGAGCGGAATGGAATAGAGACGTAAGATGTTTGATTTTTTGGACTGTTCAGAAAAAAGATGA GTATCCCACCTTTTCTTTTCCTTCAATTTTGTGGGAATTGGATGGAAGTCATGGAACAATATTTTTTGTTTGTTTTTACA TTCCATCATTGAAATGTTCAAATGATGAATGGTAACTTCACTCCATTCTGTTTTACTTCACTTCTTTCCATATCCGCTCT GTTAGATATTCAAACTTTTGTTCCTTTAAGTCGCTCTCACTAGTATGGATTACTTAATCTGAAAGTATTCTTCTCTTCAC ACTTCCAATATGCTTAAAAAAGGGACAATCTCTGTGTTTCTCGATCTAGCTTTGATGATGCTATTAAATGTCTATGATGA GATACTTGGTGGTGTAGTATTTTCTTGGATGGTAATGTACAAGATAGTAATATCTCATTCACATTTTATTCTCTGGAGAC TAAAAGAGATACACTTTCTTATATCATTATTTTAGTAGTAGAAAGCTTGGAGCAGGTCTTTACCATGTAAGTGTAGTAGC AGTAGAAGGAACTAGGATTTCATGAATCATGTTAACAGATATCATCAAGGGAATATTTATTATCTACTGATCCATTAATT TATTTGGAGAAGTTCATTTATGTTTGATTAATAATTTGGTAGATGACTGGTGTTTCACTGTTTTTCTGCAATTAAGTCTT GTCTCTATTACTCTGCATACTACTTATGAACAGTTAGTACTGTGAAAACCAGAAAATATATAATATAATGTACAATGGTT CCAGTTAGCATCATCTTATTCTTTGACTTTATAGGGACAAGCATTTGCTTGAATAGAACCCTGATTTGGCCTGAAGGTAG TTAGAGCAATCAATTCAATTTTTCTAATACAGCAACCATAGTTTAGGCATGTGAGACCAATGCATGGAAATATGGTTGAT GGTATTGTGTGAGAGGCTGCAAAAGTCTTCATGTAGTGCACTTTGATGGCAATTGTGTCACACAAACAAACCGATATTGT GATAAGTATTTGTTATTGAAAAAGAAATTCTATTAAAAATTAAGAGAATGCCAGGACACAAAGAAATTTTGATGAAAGAT TAAAGTATATACATTTAATTTGTGCAGCTGTATTGTTTTGAAGATCGGGGTAACCGTCGTGTTGCGTTGAGGCCTGAACT TACTCCTTCTTTGGCAAGACTGGTGATACAGAAAGGGTAAAATTCATTTTGATGTGCTCATTTTAGGATTCCTTACATAT GCGGTTTTGGTGTTAAGTCTAGGACTAAAAATTACAGTTAACTATTGACATTTTTGAATGTGAATATTGAGTTCTGATCT TCATGTTTTTTGCACTTTCTAGGAAGTCTGTATCACTACCATTGAAGTGGTTCACTGTGGGACAATGTTGGCGGTATGAG AGAATGACAAGGGGGCGTCGCCGTGAGCACTACCAATGGAACATGGATATCATTGGTGTTCCTGGTGTTATGGTAAGAGC TGTCTACTATTCATCTTGATGTAATGGACAGTCCTCTTTCTAGTCAAATGTTTCAAGATTGTCATGAACCAATTATCCCA AAAACTTAAGTTTTTGGATAAGGGTCACAAGAATGATTTTATATTATTATTTCTAACACTCCCTCTCATGTAAGGGCCCT TTGGGCTTGAAGCATGGACAATGCACAGACTCACGTACCATGGGCTGAAATTCAACTTTTTATTAGAAGAATTGAGGGCG ACAAGGACCGAACTCCAGACCGCTTGGTCATAGAGGCTCTGGTACCAAGTGCGCGTGAATCATTGGATTAATTTATTGAG GTATGGGTCTGCGTCTCTGCGAATCTGAAGCCTTAGAGCTGGAATTCGATGTCGCAGTTTGTTGATGAGAAGCCTGAGCA ACATTTACTTGAATTGATTCAGAGAGTGATTTCTTCTGTAGCTTCTCCAAACGAGTCTCATGCTTAATGAGCATAGCACC AACATCAGAAATCGAACATGGAGGCTCAGTAGTCTGGACTACGGTGACAATCAAGTGATACTCTTCAGGCAAACCTTCAA GAGTCGCTTCCAGATGATCGCGATGCGAGACATGCTCACCCATGGTGAAGAGCGTGTTGACAATCATCTTGATTCGATTC AGGTAATCAGTCATGGAGTGATTTTCCTTTGCAATATGGCACAATTCAGCGCTCAGAATATTCAATTGAGCCTTGGACTG TCCATGGAAGTAGCTATGCAATTCCTCCCAAACCTGCCATGAATGAACACAAGTGACAACGTAAGGAAGAACAGATTCAG AAAGCAACGAATCTTGTTGCTCCCATTCGCTATGCAGAGGATTGATATACTCAATCATGCGATCCACATCAGATAGTAAT TTTGGTGGAATCACCGGATTCCAGTGGTGTTCATTGCGCGTAGCGGGCCATGGTGGAAAACCAAAATCCCGCCATACATG ACAAATAATGGCAGAGTATGGCAGAATATGACGGGATGTCGGCCATGGCAGAAAGCAAAAAACCACCATGAGAAACTGTC ACGGCGGATATTTGATAACACTGCCGGATTCACAACATACTTTTGAAGCTTCCTACTGCAAAGAACTCCTTCAATTTTCT GATTCTTCTCATTCATTTTGATTGAAATCTGATGAGAGAACGAGAAGGATGAAGACGAATCAGAGACATTGTCGCCTCCT GACGCACCAAATGGATTTGACAGTGAATCCATTGATGGATCGGTCAAGCTCTAGATACCATAAAGAGAAACCCTAAATAG ATAGGTAGGTAGGGAGGGTAGGAGATATGAAAATCTGAAATTCTGTTATTATGATAGGCAGAGGTTACATGAGTTACACA TTCTGTATATATGCAGAACAGAAGCAGTAGCTTCTGAATTACTGACTACTAACTACAATCTAGCATTAGTCACTTAACTA CTAACTACTAGATACAATAGGGAGGGGGTGAGGGAGATCTGAAAATCTGAAATTCTGTTATTATGATAGGCAAAGGTTAC CTGAGTTACACATTCTGTATATATACAGAACAGAAGCAGTAGGTTCTGAATTACCCACTACTAACTACTCTAAACAAGGG ATTTTAATCTCAAAGGAAGTATGTCTTGGACCTCCTTAAGGAGACATGCAAACTTGGATGCAAGGCTAGCAGATAAATTT GAAATGAAGGATCTTGGGAAACTGAAGTACTTTCTTCGAATTGATGTAGCCTACTCTAAACAGGGGATTTTAATCTCAAA GGAAGTATGTCTTGGACCTCCTTAAGGAGACATACAAACTTGGATGCAAGGCTACATGTGTTCCTATTGAGAAGAATCAT AGAATAGAAGAGGAAAGTCCCAAGATTGACAATGCTTAATATCTGAGACCAGTAGGAAAGCTAATATATTTGGCCCATAC TAGACTTGATTTAGTACATGCTGTCAATCTTCTAAGTTCTAAGTCCGTTTATGTATGATTCAAGAGCAAGACACATCCAA GCTGTAGTCTGAATTCTACATCATCTCAAAGCCACACTAAGGAGTGGATTGTTGTTTAGAAGTGGAAATTTGACCATGGA GCTGTATATAGATGCAGATGGTTAGTCATTGACAGAAGGTCAATGTTCGGCTACTATATGTTTTTGGGTGGCAATCTAGT CACATGGAGAATTAAGAACATAATATAATTCCTTGGTGTGCAGATGCTGAATTTCAAGCTATGGCACAACAAGTTTGTGA GCTATTATGTACGGGGATTGTTTTAGATGATTTGAGAGGTTAAGTATGAACATGTTGCTTCTCTGTAGTTGTGTCACAAA ATAATGAAAATTTCTGGATGTTCTTCAGAATAAAGTCTTTAGATATGTTGGTTTTTGTTATTTATATTATTACTTTGACA TGCTTTGAGTAAATTTTTATGGTTGGTTCGTATTGTGTCTCTTACTTCAAAATTTTGAACAACGGTACAAATAACATTAT TGAATGCATTAGATTGTTATCTTTTATATGGATTTTATCATCATGCTTTTTATATTGTAGGCTGAAGCAGAGCTTATATC TTCTATTGTCACTTTGTTCAAGCGAATAGGAATTACGGAATCAGATGTTGGATTTAAGGTTTCTAGTCGAAAGGTGCAGA TTTTATTTTCTTTAAATGATGGGCCGACTTTCCTTCCATTACGCTATTTTTATTTCATTTCCCTTTCTTTTCAAGAGTTA TATATTCAAGGGATGTATTAGTTAATTTATTAATATTACTTAAGACACTTAACATGTCTGCTCCTGAAAATTGTGTATTT TATTTCATTTCCCTTTCTTTTCAAGAGTTATATATTCAAGGGATGTATTAGTTAATTTATTAATATTGCTTAAGACACTT AACATGTCTGCTCCTGAAAATTGTTAGTTTGTGGGGGCATGTTAGAATATAATTTTGTTAACCATCTTTAGCTTTCTGTT ACGATTAGCTGGATTCGTTAAGAGTTAGTTAGTTTGTTTTGTAAGTGTCTCTCTCTATTACAATTACCTGAGTTAGTTTC ATTTTTATACAAACATCTCAGTGTAATCATCAATTGAATTAACAAATTCATTCTCAGAATTATACAGAACTCTCTCAATT TCTCTCTAGTCTCTTTTTTCATTCTTGTTTGTTTTCTGTTAAACTTGTTTGCAAATTCCCCAACACCATGGTATAGCTAT GGGAAAACATCAACACATTATTGAGACAACTGGTACTACTCATTTTCGACTTGCTAATACACCTTTAAAATGCTGGTGGT TATGTAGTTATTACTCCCTCCGTTCCAGAAAGTTTGTAGTTTTGGGTATGATTTCAATATCCCAAATAGTTTGTTGTTTT AGGATGCCAATGCATTTTTCCCCATTTTTTTTCCACCTGTACCCTCATTTAATACATTTTTCTCTCACTTATCACCTTTC ATATTAACCAACCACAACTCTTGTCTATTAATTACATTCCTCTCTATCTAAGTATAATTTAATAGTTACACATCATACTA GTAAAATTAAATAAGGGCAATCTAGTCAAATTATACTATCAATAATTGATTTCTTACTCTTTGTGCCACAACCTTAAACT ACAAACTTTCTGGAACGGAGGGAGTATATTCTTATAGCTGTTTACTTAATTAATTGGATGCTGTCTTCAGTTTTTTTTTT TAAATAACAAAGGGCCTCATTTTCTTTTATTTTACACTATTTCCATACATGTTTTTGGTTCTACACTTCTACTTGCTTTG TCCGTGATGAGTTATCTGCTTATGTTATTAAATGTGTCTGTTTGGGTTATTCTTGAGTTCGAAAGGGATATCGGTGTCGT TCTTCTACCTCATGCCCATTTTACATGTCTGACAATGTTACTTTCTTCAAGGACATTCTGGTCCTGCTTCAGTTTCTTGG TATGGTTTTGTTTGGTGATAGGCTATCATTTCTTCTTACTTTACAGGTTCTTCAGGAAGTATTAAGGTGTTATTCAATAC CTGAAAATTTATTTGGCAAGGTCTGCATCATTATTGATAAGGTGAGTTATGTACCTTGTTTCTGTTTTACTTATTTTCTT AAAGTGTAGATGGTGCTCTAAGTTTCTTCATCTTTGTCTTGTGTGTTTTTTAATACACTTTTGTGTGTGAATTTTTTAGG CGTATTTTTATTGCACCTAAGCCCTCATATGGTTAGGGTATCATTTATTTTGTTTAGTTCAGTCACTGAATTGAAGGATA AGGAAAATATCTTGCTTGAGGATCTTTGGTAACTTTGTATAACATTGGTGGTTGATTTCACGATTATAAGCAAATGTGGG GTACTTTAAAAGGAATTCTGACTGTCTAGTCAATAAATAAGTAAATGAGTTGTAGTTGAATCATTGGTTCTTAGAATAAA GTCCTTTGTACCTTATGGAATGGAAGTGTTAATATCATAGTAAACTCAACGCAATTCTCATTGGTATGGGTACATGTATG TGGTGTGTTGTGCACTACTACCTCCGTTCGTATTTAACTGTCCTGAGAGAGGAGAAACACATATTAAGGAGTGCATTGTT AATTTTCAGAAAAATATTATTTGTTTTCCTATTTTACCCTTTAAAATGTGTTTTATCTTCCCTCATTTATTGCTCATACA ATGACCCTATTAGGAAAAACATAATTTAATGGTCTTGAAATGCTAAGCGGACAGATATATAGGAATTTTTTTTTTCTTCA AAGTGGACAGTTAATAAGGAACGGAGGTAGTACTGTATAAAATATATGATACGCAAGGCATATTAAGTTGGTATGCTATT TGGGGAGATTTCATTTGGGAGAAGCTTCAACGGGACCTTATATCCATTTCCTATGTTAGGACAAGTGGCCAACTTGCAGA TGTGTTCACAAAGGCTTTGAATGGGGTGCGTAATGATTTCATTTTTAACAAGCTGGGTATTATCAATATCTATGCTTCAG CTTAAAGGGAAGTGTTAAGGGTTAGGGTTCTGAGTTAGAAGTAGATTATTGAGTGTGTGGGCCAGACTCATATGTACATG TATTTGGTACTTTGTACCGCACATTGTCCCTTAACCTAGAATGTACATATATCAAGACACTGCATCTAGCAGAGTATCAA ATTAGAATTTCCCAATCTCTTTTTTTCTCTCTCATATCTCTTTTGCTCCTTCAGACAAACCTATTTGTAGGATATCAATT TCGACTACTTAGGATTTCTATTTTCGTAACTTTAATTTTATAATTTGGCATTTTCCTTGTGTTCTATTGATGAAGGAATG AGCTTTCTGTCAAAGCATATCGTTCTCAATAAAAATTCATGATTTTCAATTTTATACAGATTGAGAAAATTCCAATTGAT GAGATAAAGAAAGAGTTGAAAGCTGCTGGTCTATCACAAGAGGCTGTCCTGGAGCTATTGCAAGTCCTTTCTGTAAAGTC ATTGACCGAGTTAGAAGGTTAATCCTCTGCACTTAATTGATTCTGAATTTTTTCTATAGTATAGCAAATTTCCTGAATAT CTTATGTCCTGTTGCAAGTGTTGGAAAAACACATATAACAGCCCGTTGTAGCTTATGTGGTTCAGACATTGAGAGTGGGT TTATGAATTTAAGAATACAGGTGCAAGCTTTGGATGTTGAGATATTGATTATAGATTTATTCCGCTTTTATATTTAATGA CTTCCAGCTTTTTTTCTCTTTTTGATGAATGCTTCACTTTCCCAGAATATCCTGAATGAGGTTTTGGAAACTTGTTTAGC TTGATAGAGTATCAGAGTTTGACCCTATTTTGTATTATTGTGTTTCTGTTTGATGTCATATATGTATCTCCATAATTTTT TTTAAATATCATATCCCACTTGTCAGATAAAAGATTTGCCTTCCTTTGCCGTTATCTCGAAGCCCATCTATGGCTCCACA AAGTTCATATACTCTGTATTAGTTTGTAAAAACCTAGTCATACAACTTGCATGAAATCTATATTCAATTGTATTCAGAGA GACTCGGAAACAGTGGGGAAGCAATTGCTGATCTCAAAGAGCTATTCTCACTTGCTGAAAAGTTTGGTTACTCTAAATGG CTTCAATTTGATGCGTCAGTTGTTCGTGGCCTTGCATATTACACTGGCATTGTATTCGAGGTTAGATTGTCTTCACGGCT TATATATACTAAATAAATGTTTTACATTAGTATAGATAGTTTAGGATCTTTTTTTTCTAAATTCTTGCTTGTGGATTACC TCTGTGTTGCATAACTCGATACTTTTCTCATTACATCGTGACCTGATCCTGTGACAAGTGTTTTATAGGTTCATTCAAAC ATTGAGAAGTTTCTTGGGGCTTGTGTTTTCAAATTTACATACTCTTACAGTATGCTTTGTGACTCCAAACAGACATATGC TTATTGAGTTATATAAATAAGGGTGAAGTCCATGATGA
CDS sequence (LotjaGi1g1v0688700.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTGCAACTCCACTATCATCTTCCTTCCTCACCCTGCAACCGCGCTTCAACTCCTACATCAACCCTCTCTTCCGTTC ACTCACCTACCAACTCAATGGCAACTTCTCCACAGTCAGACTCCACTCCGCACTTCCCGGCGCGGCGGAGACCGACTCTC CCACCGGCGGCCGAACCGGCGCCTTAACTCCCGGCCCTTCTGTCCCCCGTGACGTGCAGAAAATCGACGTCAACCCTCCC AAGGGGACACGTGACTTCCCGCCTGAAGACATGCGCTTGCGCAACTGGCTCTTCAACCATTTCAAAGAGGTTTCACGGTT GTATGGATTTGAGGAGGTTGATTTTCCAGTGCTTGAGTCGGAGGCATTGTATACTAGGAAAGCAGGGGAGGAGATTAAGG ACCAGCTGTATTGTTTTGAAGATCGGGGTAACCGTCGTGTTGCGTTGAGGCCTGAACTTACTCCTTCTTTGGCAAGACTG GTGATACAGAAAGGGAAGTCTGTATCACTACCATTGAAGTGGTTCACTGTGGGACAATGTTGGCGGTATGAGAGAATGAC AAGGGGGCGTCGCCGTGAGCACTACCAATGGAACATGGATATCATTGGTGTTCCTGGTGTTATGGCTGAAGCAGAGCTTA TATCTTCTATTGTCACTTTGTTCAAGCGAATAGGAATTACGGAATCAGATGTTGGATTTAAGGTTTCTAGTCGAAAGGTT CTTCAGGAAGTATTAAGGTGTTATTCAATACCTGAAAATTTATTTGGCAAGGTCTGCATCATTATTGATAAGATTGAGAA AATTCCAATTGATGAGATAAAGAAAGAGTTGAAAGCTGCTGGTCTATCACAAGAGGCTGTCCTGGAGCTATTGCAAGTCC TTTCTGTAAAGTCATTGACCGAGTTAGAAGAGAGACTCGGAAACAGTGGGGAAGCAATTGCTGATCTCAAAGAGCTATTC TCACTTGCTGAAAAGTTTGGTTACTCTAAATGGCTTCAATTTGATGCGTCAGTTGTTCGTGGCCTTGCATATTACACTGG CATTGTTCATTCAAACATTGAGAAGTTTCTTGGGGCTTGTGTTTTCAAATTTACATACTCTTACAGTATGCTTTGTGACT CCAAACAGACATATGCTTATTGA
Protein sequence (LotjaGi1g1v0688700.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPATPLSSSFLTLQPRFNSYINPLFRSLTYQLNGNFSTVRLHSALPGAAETDSPTGGRTGALTPGPSVPRDVQKIDVNPP KGTRDFPPEDMRLRNWLFNHFKEVSRLYGFEEVDFPVLESEALYTRKAGEEIKDQLYCFEDRGNRRVALRPELTPSLARL VIQKGKSVSLPLKWFTVGQCWRYERMTRGRRREHYQWNMDIIGVPGVMAEAELISSIVTLFKRIGITESDVGFKVSSRKV LQEVLRCYSIPENLFGKVCIIIDKIEKIPIDEIKKELKAAGLSQEAVLELLQVLSVKSLTELEERLGNSGEAIADLKELF SLAEKFGYSKWLQFDASVVRGLAYYTGIVHSNIEKFLGACVFKFTYSYSMLCDSKQTYAY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 47 | 86 | 40 | - | – | |
| PANTHER | 70 | 351 | 282 | 1.6E-133 | – | |
| PANTHER | 70 | 351 | 282 | 1.6E-133 | ||
| Gene3D | 73 | 359 | 287 | 1.9E-92 | – | |
| SUPERFAMILY | 79 | 350 | 272 | 6.97E-59 | – | |
| Pfam | 82 | 351 | 270 | 1.4E-34 | ||
| ProSiteProfiles | 82 | 335 | 254 | 12.516 | ||
| CDD | 90 | 349 | 260 | 1.80321E-73 | ||
| CDD | 271 | 329 | 59 | 0.00259806 | ||
| Coils | 299 | 319 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
Expression pattern of LotjaGi1g1v0688700.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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