Domain Predictions — View

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PF13393

Source: Pfam

Description

Histidyl-tRNA synthetase

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 13

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v4591200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: histidyl-tRNA synthetase-like [Glycine max] gi\|356505252\|ref\|XP_003521406.1\|	Domains Coil G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR004154 IPR004516 IPR006195 IPR015807 MF_00127 PF03129 PF13393 PIRSF001549 PS50862 PTHR11476 PTHR11476:SF5 SSF52954 SSF55681 TIGR00442 cd00093 cd00773 mobidb-lite	20
Lj3g3v3312860.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable serine/threonine-protein kinase GCN2-like [Glycine max] gi\|356544520\|ref\|XP_003540698.1\|	Domains Coil G3DSA:3.30.930.10 PF13393 PTHR11042 PTHR11042:SF96 SSF55681	7
Lj4g3v3112980.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: histidine--tRNA ligase-like [Cicer arietinum] gi\|502122299\|ref\|XP_004497677.1\|	Domains G3DSA:1.20.200.10 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR001106 IPR004154 IPR004516 IPR006195 IPR008948 IPR015807 IPR033656 MF_00127 PF00221 PF03129 PF13393 PS50862 PTHR11476 PTHR11476:SF7 SSF48557 SSF52954 SSF55681 TIGR00442 cd00773 cd00859	23
Lj5g3v0656970.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: histidyl-tRNA synthetase-like [Glycine max] gi\|356505252\|ref\|XP_003521406.1\|	Domains G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR004154 IPR004516 PF03129 PF13393 PIRSF001549 PTHR11476 PTHR11476:SF5 SSF52954 SSF55681	11
Lj5g3v0656990.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: histidine--tRNA ligase-like isoform X2 [Cicer arietinum] gi\|502111238\|ref\|XP_004493995.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.930.10 IPR004516 IPR006195 NON_CYTOPLASMIC_DOMAIN PF13393 PS50862 PTHR11476 PTHR11476:SF5 SSF55681 TRANSMEMBRANE	11
LotjaGi1g1v0688700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp\|O82413\|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|I1JPP8\|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700	Domains Coil G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR001387 IPR004154 IPR004516 IPR006195 IPR015807 IPR036621 IPR041715 MF_00127 PF03129 PF13393 PIRSF001549 PS50862 PTHR43707 PTHR43707:SF1 SSF52954 SSF55681 TIGR00442 cd00093 cd00773 mobidb-lite	23
LotjaGi1g1v0688700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp\|O82413\|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|K7KFU0\|K7KFU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700	Domains Coil G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR001387 IPR004154 IPR004516 IPR006195 IPR036621 IPR041715 PF03129 PF13393 PIRSF001549 PS50862 PTHR43707 PTHR43707:SF1 SSF52954 SSF55681 cd00093 cd00773 mobidb-lite	20
LotjaGi1g1v0688700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp\|O82413\|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|I1JPP8\|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700	Domains Coil G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR001387 IPR004154 IPR004516 IPR006195 IPR036621 IPR041715 PF03129 PF13393 PIRSF001549 PS50862 PTHR43707 PTHR43707:SF1 SSF52954 SSF55681 cd00093 cd00773 mobidb-lite	20
LotjaGi1g1v0688700.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp\|O82413\|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|I1JPP8\|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700	Domains Coil G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR001387 IPR004154 IPR004516 IPR006195 IPR015807 IPR036621 IPR041715 MF_00127 PF03129 PF13393 PIRSF001549 PS50862 PTHR43707 PTHR43707:SF1 SSF52954 SSF55681 TIGR00442 cd00093 cd00773 mobidb-lite	23
LotjaGi1g1v0688700.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp\|O82413\|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|K7KFU0\|K7KFU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700	Domains Coil G3DSA:3.30.930.10 IPR001387 IPR004516 IPR006195 IPR041715 PF13393 PS50862 PTHR43707 PTHR43707:SF1 SSF55681 cd00093 cd00773 mobidb-lite	14
LotjaGi3g1v0498400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein kinase family protein; TAIR: AT3G59410.4 protein kinase family protein; Swiss-Prot: sp\|Q9LX30\|GCN2_ARATH eIF-2-alpha kinase GCN2; TrEMBL-Plants: tr\|A0A151RUS1\|A0A151RUS1_CAJCA Putative serine/threonine-protein kinase GCN2; Found in the gene: LotjaGi3g1v0498400	Domains Coil G3DSA:1.10.510.10 G3DSA:3.10.110.10 G3DSA:3.30.200.20 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR000719 IPR006575 IPR008266 IPR011009 IPR016135 IPR017441 IPR024435 IPR036621 IPR041715 PF00069 PF05773 PF12745 PF13393 PS00107 PS00109 PS50011 PS50908 PTHR11476 PTHR11476:SF10 SM00591 SSF52954 SSF54495 SSF55681 SSF56112 cd14046 mobidb-lite	32
LotjaGi4g1v0456100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G02760.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|F4IYF8\|SYHC_ARATH Histidine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr\|A0A072VJI1\|A0A072VJI1_MEDTR Histidyl-tRNA synthetase; Found in the gene: LotjaGi4g1v0456100	Domains G3DSA:1.20.200.10 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR001106 IPR004154 IPR006195 IPR008948 IPR015807 IPR033656 IPR036621 IPR041715 MF_00127 PF00221 PF03129 PF13393 PS50862 PTHR11476 PTHR11476:SF7 SSF48557 SSF52954 SSF55681 TIGR00442 cd00773 cd00859	24
LotjaGi4g1v0456100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G02760.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|F4IYF8\|SYHC_ARATH Histidine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr\|A0A072VJI1\|A0A072VJI1_MEDTR Histidyl-tRNA synthetase; Found in the gene: LotjaGi4g1v0456100	Domains G3DSA:1.20.200.10 G3DSA:3.30.930.10 IPR001106 IPR008948 IPR041715 PF00221 PF13393 PTHR11476 PTHR11476:SF7 SSF48557 SSF55681 cd00773	12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd00773	CDD	1	7.69