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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0730600 |
| Transcript ID | LotjaGi1g1v0730600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor Tu; TAIR: AT4G02930.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial; TrEMBL-Plants: tr|A0A1J7HTE2|A0A1J7HTE2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0730600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130245596..130249113) extracted from Lotus japonicus Gifu genome v1.2.
AAGCCTCATGTTAATGTGGGAACTATTGGGCACGTTGATCACGGGAAGACAACGCTAACTGCCGCAATCACCAAGGTTTA CTGCAATTTCAACTCAAAAAATGAACCAGATTTTGAGGCTTTAGGTTATTTTATTTGACATTATTTGTATTTGTACAGGT GCTTGCTGATGAAGGGAAAGCGAAAGCTATTGCCTTTGATGAAATTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTA CCATTGCTACTGTGAGTACTTGTTTTGCGCTTTTTATTCATTTAATTTGGCATTTCAATGAATTGTGATTTTTTTGTTTT GTTTCTATGTATCGCTGCTTTGTTTGAGAAATGGACTATTTGTCTTGATGATTGGATTTTCAGGCACATGTTGAGTATGA GACTGTGAAACGGCATTATGCACATGTGGACTGCCCTGGACATGCTGATTATGTTAAGGTAAGCTGAAAATTTGGTCTCA TTTCCCTAAAAATAGAAAGTTGCTTGTAATTTCTAATTATCTTGCAACAGCTGAGTGGTTAAGTTTAAGAAGTGACTATT GAATTATTAGACCTAGGATTGTTGATGGGTTTAGGTGGTAGAATGAGATTAGGTTAATTTAACTGACAGTTCTCATTTTT GAATGTACATTATTTATTTGTTGAATGTGGAATTCATCATTTTGGGTGCTTGAATATCTTCATCTTCTATTCACAAATGG GATGGAAAAAGCATAATATGTCTTCTGATTACCAAAATGCTTTATTTTAAAAAATGACAATGAAAAAAAATTACACGAAA AACTTGCCACTGTGTAGCTGTATTTCTCAGATAACTTCTATGTCTTCTGAAATTAGTGCATTTAGCATTCCAGCATGGCT TGATGTACCTACAGGTTGTTTGTCTAATGGTTTCTTCACTGTAAATGACAAATTCTTCTTATTCATCTGCTACACTGTTG CATTGGTTATGTTTCTGCAACTGTGCTTGTTTAGTTATACACAATTACACATACCTAATAAATGTTTGTTTCACAGAATA TGATTACAGGAGCTGCCCAAATGGATGGTGGTATACTAGTTGTATCTGCACCTGATGGACCGATGCCTCAAACCAAGGAG CACATTCTTCTTGCTCGCCAAGTAGGTATTTTATTAAGTTGGTTTGTAAGTAATTGAAGCATATGTTTAGGTCTCCAGTT GCTTCCTTGCTTCTAGGTTAATGAACTTGTTATCTTTAAATGAATTGTGCAGGTTGGTGTGCCATCTCTTGTGTGCTTCT TAAATAAAGTTGATGCTGTCGATGATCCAGAATTGTTAGAACTTGTAGAAATGGAGCTCCGCGGTAGGGTGTTTCTCAAA GACTTCACCTTCCTTCCTAATTCATACTTTCTAAAAGAATGCATCTGCATTAGTTCCTGTAGTCCCCATCATGTTTAAAA CTTCAAGGTGTATTTATGTTCATTATGTATTCGGCAGAGCTTCTGAGCTTCTACAAGTTTCCTGGGGATGAAATCCCTAT CATTAGAGGTTCAGCGTTGTCCGCTTTACAGGGTACAAATGACGAGATTGGTAAAAAGGCTATTCTAAAATTAATGGATG CTGTAGATGAATACATTCCTGACCCTGTGCGCCAGCTCGACAGACCTTTTCTAATGCCAATTGAAGATGTATTCTCCATT CAGGTAAATGGGCATGGACTTCTTCTGTTTGTTTTTTTTTTTTTTGAAGAATGCCTACTCATTGAAGTGAAGATGAGTTT GTTAATTTTTTAGTCATATGTTACAGAACCTTGCGTTGACACTGGCATTTATCTAGTTTCAATCACTTGATACTTTAAAA AAACTAAAAAAGTGTTTCCTCTTTTTTTTTTCGCTTCTATTTTTTTTAACTTGTGTATAAAAAATTATGTTCTTCAATGC TGTTATGAGTCCACAAAATCTGCATTGATTTCCTCTGGTTTATAGGAAAGAAACATCATAGTTAAAAGCAATGCTATCCA GAATGACACTTTGGCTGCTTAATATTTGTAATTTGTGTTAAAGGGACGAGGAACAGTAGCTACTGGCCGTGTTGAACAAG GGGTAATCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTCATGCAGGTATGCTAGTTCAGTCATTTTCTGGTTTTAGGC TGCCACCTGATTCTCATCATTCCTGGGAATTAGTCTATTGTTCTGTTTCAGAAGTATCGATGAATTCTTTGCATTGTAAT AATGGTTATTCCTGACACTGAGCTTTCCTTGGTAGGGTGGTCCTCTAAAAACAACAGTAACTGGAGTGGAGATGTTCAAG AAGATTTTGGATCAAGGACAAGTAAGTTAGTATCTTCACCTATAAGGGCTATTCGTATAGTATTATGAACTAACGATTTC AAAATCTTATGCTATTTGATTGAAGTATGTGAATGGTTTTTATATCCGACACATCCTCTCATCCAAGAGCTTGTTGGGTT TAAAGAGTGAACAATGTACAGATTCTTCTTGTATTGAAATTTAACTTTTTATTTTAGAAGAATGAGGTTGAAAAGGATCT AATGCTAGACCACTTGGTCATGGATACAATGCCATAAACTAATTATGTCTAAAGGTTAAGCTACTAGAGTAGAACATATG AATGGTTTTATGAGCCCGTTTGTATGTGGACCAAAGAGCACTTTTAAGAGCTTATTTAGTGTTTTTTATAGTAGATACTA GATAAGCTCCAATAAGCCTGTCTCCAAACAGCTTCATAATCTAACACTGCATATGCTAAACTAATGTGGATTTTTACATT TCTTAGGCCGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTGAAACGTGAAGATATTCAACGTGGTCAGGTTAGTTGCAG TGATGAAGCTTTTTCTTATTTTTTAGACCTTGTTGCAATTTGCGAGGGAACTGTATCTTATCTGTATTTGTTTCCATAAG AATTGTCGAGTTTAGATTCAAACTACGAGGGTTGAGAAACAACTTTCCTAACACTACGTTGTATTGAAAAGGTCATTGCT AAGCCTGGTTCTGTAAAAACATACAAGAAGTTTGAGGCAGAGATTTATGTGCTCACAAAGGACGAGGGAGGGCGACACAC TGCTTTTTTCTCTAACTATAAGCCTCAGTTTTACTTGAGGACTGCTGATATCACTGGATCAGTAGAGTTGCCTGAAAATG TTAAAATGGTTATGCCTGGAGACAACGTTACTGCCACATTTGATTTGATTTCACCAGTTCCACTTGAACCAGGTCAGTAT GTCTCAATTTAATGAAAAAAATTGTTTCTACATGATTTTCAACCACCATTCATATGTCATCCATACACTGCAATGTTATC CTCACCATATGCTGTATATTTTGTACACTTCATGCTGGAGTGTCAAAACTGGAAAGTTTAGTTTATGGCTTGCTATTGAT TTTACAGGACAACGATTTGCCTTGAGAGAGGGTGGGAGAACAGTTGGTGCCGGTGTGGTGTCAAAAGTAGTGAGCTAA
CDS sequence (LotjaGi1g1v0730600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCTGTAGATGAATACATTCCTGACCCTGTGCGCCAGCTCGACAGACCTTTTCTAATGCCAATTGAAGATGTATT CTCCATTCAGGGACGAGGAACAGTAGCTACTGGCCGTGTTGAACAAGGGGTAATCAAAGTTGGTGATGAAGTTGAGGTTT TGGGTCTCATGCAGGGTGGTCCTCTAAAAACAACAGTAACTGGAGTGGAGATGTTCAAGAAGATTTTGGATCAAGGACAA GCCGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTGAAACGTGAAGATATTCAACGTGGTCAGGTCATTGCTAAGCCTGG TTCTGTAAAAACATACAAGAAGTTTGAGGCAGAGATTTATGTGCTCACAAAGGACGAGGGAGGGCGACACACTGCTTTTT TCTCTAACTATAAGCCTCAGTTTTACTTGAGGACTGCTGATATCACTGGATCAGTAGAGTTGCCTGAAAATGTTAAAATG GTTATGCCTGGAGACAACGTTACTGCCACATTTGATTTGATTTCACCAGTTCCACTTGAACCAGGACAACGATTTGCCTT GAGAGAGGGTGGGAGAACAGTTGGTGCCGGTGTGGTGTCAAAAGTAGTGAGCTAA
Protein sequence (LotjaGi1g1v0730600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAVDEYIPDPVRQLDRPFLMPIEDVFSIQGRGTVATGRVEQGVIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQ AGDNVGLLLRGLKREDIQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYKPQFYLRTADITGSVELPENVKM VMPGDNVTATFDLISPVPLEPGQRFALREGGRTVGAGVVSKVVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 204 | 204 | 1.2E-129 | – | |
| PANTHER | 1 | 204 | 204 | 1.2E-129 | – | |
| SUPERFAMILY | 13 | 109 | 97 | 1.08E-32 | ||
| Gene3D | 14 | 144 | 131 | 3.4E-53 | – | |
| CDD | 19 | 107 | 89 | 1.10766E-50 | ||
| Pfam | 33 | 103 | 71 | 1.5E-18 | ||
| Pfam | 108 | 202 | 95 | 5.5E-31 | ||
| CDD | 110 | 199 | 90 | 2.95267E-58 | – | |
| SUPERFAMILY | 113 | 203 | 91 | 1.06E-35 | ||
| Gene3D | 148 | 203 | 56 | 1.3E-27 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0730600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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