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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0258300 |
| Transcript ID | LotjaGi2g1v0258300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cullin, putative; TAIR: AT1G26830.1 cullin 3; Swiss-Prot: sp|Q9ZVH4|CUL3A_ARATH Cullin-3A; TrEMBL-Plants: tr|A0A0L9VNM3|A0A0L9VNM3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0258300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72505144..72507171) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGCTGCACAAATTTGGGGAGAAGCTTTACTTAGGACTTGTGAAGACTGTTACTTCTCATCTAAGAGAAATTTCTCA ATCAATTGAATCTGCTCAAGGGGAAGTTTTCTTGGACGAGCTCAACAGGAAGTGGGTAGATCATAACAAGGCATTACAGA TGATCCGGGACATACTGATGTACATGGACCGAACTTACATACCAAGCAACCATAAAACCCCTGTTCATCAGCTTGGTTTG AATCTCTGGAGAGATGAGGTGATCCATTCCAGCAAAACTCGAGCTAGGCTTCTAGATACACTTCTGGATCTTGTGCTTAG AGAAAGGAATGGTGAAGTAATAAACAGAGGCTTGATGAGAAATATAATAAAGATGCTAATGGATTTGGGTCCGCGTGTTT ACGAGGGCGACTTTGAGAAACAGTTTCTTGAAGTTTCAACAAATTTTTACTGCCTTGAGTCCCAGGGATTCATTGAATCT TGTGATTGTGGGGATTATCTGAAGAAAGCTGAGAGGCGTTTAAATGAAGAAATGGAGAGAGTATCCCAATACTTGGATCC TGCAAGTGAATCCAAGATAACTGCTGTGGTGGAGAAGGAGATGATTGAAAATCACATCCACACTCTAGTTCATATGGAGA ACTCAGGGCTAGTTAATATGCTTTTGGATGACAAATATGAAGACTTGCAAAGAATGTATAACTTGTTTCGCCGGGTGCTT GCTGGGCTCACAATTGTTAAAGAAGTCATGACTTCTTTTATACGGGATACTGGTAAGCAGCTAGTTTTGGACCCTGAAAG GTTGAAAGATCCTGTGGATTTTGTGCAACGGCTATTGGATTTGAAGGATAAATATGACAAGATCATTAGTATGGCATTTA ACAATGACAAGACATTTCAGAATGCCTTGAATTCCTCTTTTGAACATTTCATCAATTTGAATGCTCGGTCTCCTGAGTTC ATTTCTTTGTTTGTGGATGACAAACTTCGCAGAGGTTTGAAAGGGGTAGGTGAGGAGGATGTAGAGATTATACTGGACAA AGTCATGATGCTTTTCCGGTTCCTACAAGAGAAGGATATCTTTGAGAAGTATTACAAGCAACACTTAGCAAAAAGGCTTC TTTCAGGAAAGACTGTATCTGATGAAGCAGAAAGAAGTTTGATCGTTAAGCTCAAAACAGAGTGTGGATACCAATTTACT TCTAAGCTGGAGAGCATGTTTACAGACATGAAGACTTCTCATGATACCACACATGGTTTCTATGCATCCCATGGACCTGA GTTGGGGGATGGCCCTACGCTATCTATTCAGGTGCTTACAACCGGTTCATGGCCGACTCAGCCTAGCCCTCAGTGTAATC TTCCAACTGAAATCCTTGGTGTATGTGATAAGTTTCGGGCTTACTATCTTGGCACCCACAGTGGAAGGAGATTGTCCTGG CAAACTAATATGGGTACAGCTGATTTGAAGGCAACGTTTGGTAAAGGCCAGAAGCATGAGCTGAATGTTTCCACATTTCA GATGTGTGTGCTCATGCTTTTCAACAATGCTGATCGGTTGACTTGCAAGGAGATCGAGCAGGCTACAGCAATACCCATGT CAGACTTGAAGAGGTGCCTTCAGTCTCTGGCCTGTGTCAAGGGAAAAAATGTTCTTCGGAAAGAGCCAATGAGCAAGGAC ATAGCTGAGGATGATGCATTCCTCTTCAATGACAAATTCACAAGCAAGTTCTTCAAGGTGAAGATAGGGACTGTTGTAGC GCAGAGGGAGTCTGAACCAGAAAATCTTGAAACTCGACAGCGAGTGGAAGAAGACCGAAAGCCACAGATTGAGGCAGCAA TCGTGAGGATAATGAAATCTAGGCGGACTCTGGATCATAACAATGTTGTTGCTGAGGTCACAAAGCAGCTGCAGTCTCGA TTTTTGCCTAATCCTGTTGTTATTAAGAAACGGATTGAATCCCTTATTGAACGTGAGTTTTTGGAGAGGGATAAAGTGGA CAGAAAAATGTACCGCTATCTTGCTTGA
CDS sequence (LotjaGi2g1v0258300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCTGCACAAATTTGGGGAGAAGCTTTACTTAGGACTTGTGAAGACTGTTACTTCTCATCTAAGAGAAATTTCTCA ATCAATTGAATCTGCTCAAGGGGAAGTTTTCTTGGACGAGCTCAACAGGAAGTGGGTAGATCATAACAAGGCATTACAGA TGATCCGGGACATACTGATGTACATGGACCGAACTTACATACCAAGCAACCATAAAACCCCTGTTCATCAGCTTGGTTTG AATCTCTGGAGAGATGAGGTGATCCATTCCAGCAAAACTCGAGCTAGGCTTCTAGATACACTTCTGGATCTTGTGCTTAG AGAAAGGAATGGTGAAGTAATAAACAGAGGCTTGATGAGAAATATAATAAAGATGCTAATGGATTTGGGTCCGCGTGTTT ACGAGGGCGACTTTGAGAAACAGTTTCTTGAAGTTTCAACAAATTTTTACTGCCTTGAGTCCCAGGGATTCATTGAATCT TGTGATTGTGGGGATTATCTGAAGAAAGCTGAGAGGCGTTTAAATGAAGAAATGGAGAGAGTATCCCAATACTTGGATCC TGCAAGTGAATCCAAGATAACTGCTGTGGTGGAGAAGGAGATGATTGAAAATCACATCCACACTCTAGTTCATATGGAGA ACTCAGGGCTAGTTAATATGCTTTTGGATGACAAATATGAAGACTTGCAAAGAATGTATAACTTGTTTCGCCGGGTGCTT GCTGGGCTCACAATTGTTAAAGAAGTCATGACTTCTTTTATACGGGATACTGGTAAGCAGCTAGTTTTGGACCCTGAAAG GTTGAAAGATCCTGTGGATTTTGTGCAACGGCTATTGGATTTGAAGGATAAATATGACAAGATCATTAGTATGGCATTTA ACAATGACAAGACATTTCAGAATGCCTTGAATTCCTCTTTTGAACATTTCATCAATTTGAATGCTCGGTCTCCTGAGTTC ATTTCTTTGTTTGTGGATGACAAACTTCGCAGAGGTTTGAAAGGGGTAGGTGAGGAGGATGTAGAGATTATACTGGACAA AGTCATGATGCTTTTCCGGTTCCTACAAGAGAAGGATATCTTTGAGAAGTATTACAAGCAACACTTAGCAAAAAGGCTTC TTTCAGGAAAGACTGTATCTGATGAAGCAGAAAGAAGTTTGATCGTTAAGCTCAAAACAGAGTGTGGATACCAATTTACT TCTAAGCTGGAGAGCATGTTTACAGACATGAAGACTTCTCATGATACCACACATGGTTTCTATGCATCCCATGGACCTGA GTTGGGGGATGGCCCTACGCTATCTATTCAGGTGCTTACAACCGGTTCATGGCCGACTCAGCCTAGCCCTCAGTGTAATC TTCCAACTGAAATCCTTGGTGTATGTGATAAGTTTCGGGCTTACTATCTTGGCACCCACAGTGGAAGGAGATTGTCCTGG CAAACTAATATGGGTACAGCTGATTTGAAGGCAACGTTTGGTAAAGGCCAGAAGCATGAGCTGAATGTTTCCACATTTCA GATGTGTGTGCTCATGCTTTTCAACAATGCTGATCGGTTGACTTGCAAGGAGATCGAGCAGGCTACAGCAATACCCATGT CAGACTTGAAGAGGTGCCTTCAGTCTCTGGCCTGTGTCAAGGGAAAAAATGTTCTTCGGAAAGAGCCAATGAGCAAGGAC ATAGCTGAGGATGATGCATTCCTCTTCAATGACAAATTCACAAGCAAGTTCTTCAAGGTGAAGATAGGGACTGTTGTAGC GCAGAGGGAGTCTGAACCAGAAAATCTTGAAACTCGACAGCGAGTGGAAGAAGACCGAAAGCCACAGATTGAGGCAGCAA TCGTGAGGATAATGAAATCTAGGCGGACTCTGGATCATAACAATGTTGTTGCTGAGGTCACAAAGCAGCTGCAGTCTCGA TTTTTGCCTAATCCTGTTGTTATTAAGAAACGGATTGAATCCCTTATTGAACGTGAGTTTTTGGAGAGGGATAAAGTGGA CAGAAAAATGTACCGCTATCTTGCTTGA
Protein sequence (LotjaGi2g1v0258300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLHKFGEKLYLGLVKTVTSHLREISQSIESAQGEVFLDELNRKWVDHNKALQMIRDILMYMDRTYIPSNHKTPVHQLGL NLWRDEVIHSSKTRARLLDTLLDLVLRERNGEVINRGLMRNIIKMLMDLGPRVYEGDFEKQFLEVSTNFYCLESQGFIES CDCGDYLKKAERRLNEEMERVSQYLDPASESKITAVVEKEMIENHIHTLVHMENSGLVNMLLDDKYEDLQRMYNLFRRVL AGLTIVKEVMTSFIRDTGKQLVLDPERLKDPVDFVQRLLDLKDKYDKIISMAFNNDKTFQNALNSSFEHFINLNARSPEF ISLFVDDKLRRGLKGVGEEDVEIILDKVMMLFRFLQEKDIFEKYYKQHLAKRLLSGKTVSDEAERSLIVKLKTECGYQFT SKLESMFTDMKTSHDTTHGFYASHGPELGDGPTLSIQVLTTGSWPTQPSPQCNLPTEILGVCDKFRAYYLGTHSGRRLSW QTNMGTADLKATFGKGQKHELNVSTFQMCVLMLFNNADRLTCKEIEQATAIPMSDLKRCLQSLACVKGKNVLRKEPMSKD IAEDDAFLFNDKFTSKFFKVKIGTVVAQRESEPENLETRQRVEEDRKPQIEAAIVRIMKSRRTLDHNNVVAEVTKQLQSR FLPNPVVIKKRIESLIEREFLERDKVDRKMYRYLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 675 | 675 | 0.0 | – | |
| Gene3D | 1 | 85 | 85 | 2.3E-24 | – | |
| PANTHER | 1 | 675 | 675 | 0.0 | – | |
| Pfam | 1 | 573 | 573 | 4.9E-204 | ||
| SUPERFAMILY | 1 | 318 | 318 | 5.49E-98 | ||
| Gene3D | 87 | 206 | 120 | 1.3E-38 | – | |
| Gene3D | 207 | 314 | 108 | 1.3E-33 | – | |
| SUPERFAMILY | 310 | 583 | 274 | 3.01E-95 | ||
| Gene3D | 315 | 427 | 113 | 2.0E-40 | – | |
| ProSiteProfiles | 316 | 544 | 229 | 54.585 | ||
| SMART | 346 | 493 | 148 | 4.6E-63 | ||
| Gene3D | 431 | 585 | 155 | 2.1E-51 | – | |
| Gene3D | 586 | 675 | 90 | 1.6E-33 | ||
| SUPERFAMILY | 587 | 675 | 89 | 2.18E-27 | ||
| SMART | 602 | 669 | 68 | 8.6E-35 | ||
| Pfam | 605 | 665 | 61 | 2.4E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Molecular function | Ubiquitin protein ligase binding | Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. |
Expression pattern of LotjaGi2g1v0258300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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