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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0001700 |
| Transcript ID | LotjaGi3g1v0001700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | D-3-phosphoglycerate dehydrogenase; TAIR: AT1G17745.1 D-3-phosphoglycerate dehydrogenase; Swiss-Prot: sp|O04130|SERA2_ARATH D-3-phosphoglycerate dehydrogenase 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7IRI9|A0A1J7IRI9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0001700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:241134..243956) extracted from Lotus japonicus Gifu genome v1.2.
GTGATCCTTGGCTATGTGCATGCCTGGTCGTGAGAAAAAGAATGAAAACCAGTCAAACAGAGAAGTCTGCTCTCCAACGC AAATGAATGCCTGGCTGTGTGTGCTAATCCAATTTCCATTCAATCCTTTCTTTCTATTCTATTTAACTAACACAAATAAA AATTCCTAATCTAGAACTAGAATGAATGAGTAATTAATTAATTAGAGAGAGTCACAGAATCAGAAAGATTAATTAATGGC ATCATCGGCTTGTACCAAATCCGTTTTCACCTCCTCTGCAACTGCAAGTTTACATTGTCCCACTACTCCCACCAGAGGAA GACCCTCTGTCGTTTCATTCCCCAAACGCAACATCGTTTTAACCTCCTCATACAAGCTCTCTCATTCTCAATGCGCCGTC AACAAAACGCGCTGCAAATCCGACGGCGGAGAAGGTATTTCAAGGCCAAGCATCTTGGTTTCTGAGAAGCTCGGAGAGGC GGGGCTCCAAGTGCTGCGCGATGTGGGACAAGTGGAATGCTCCTACGACCTCTCCCCTCAAGACCTCTGCTCCAAGATCT CCTCCTTCGACGCCTTGATTGTCAGGAGCGGCACCAAGGTCACCAGGGAGGTTTTCCAAGGCGCCAAGGGAAGGTTGAAG GTGGTGGGCAGAGCCGGCGTTGGAATCGACAACGTGGACCTTGAAGCCGCCACCCAATACGGTTGCCTGGTGGTGAATGC ACCCACCGCGAACACCATCGCCGCGGCGGAGCACGCAGTGGCTCTTCTGGCTGCCATGGCGAGGAACATCCCACGCGCCG ACGCGTCCCTCAAAGCAGGGAAGTGGCAGAGGAACAAGTATGTGGGAGCGTCCATGGTTGGGAAGACGCTAGCGATCATG GGGTTTGGGAAAGTTGGGTCTGAGGTGGCGCGTCGTGCGAAAGGGTTGGGGATGAACGTGGTTGCGCATGACCCTTATGC CCCTGCAGACAGGGCACGCGCCATTGGCGTTGATCTTGTGTCGTTTGATCACGCCATCTCCGCCGCTGATTTCATTTCTC TCCACATGCCTCTCACTCCCACCACTGATAAGATCTTCAATGAGGATACTTTTGCCAAGATGAAGAAAGGTGTTCGCATT ATCAATGTTGCGAGAGGCGGAGTTATTGATGAAGATGCGTTGGTGAAAGCGCTTGATAGTGGACTAGTTGCTCAGGCTGC ACTTGATGTGTTCACCGAGGAGCCTCCATCGAAAGATAGTAAATTAGTGCAGCATGAGAATGTGACGGTTACGCCACACC TTGGAGCTAGCACCAAAGAGGCACAAGAAGGTGTAGCAGTTGAAATAGCAGAAGCTGTGGTTGGAGCATTGAGAGGGGAA CTTTCAGCAACTGCTGTCAATGCTCCTATGGTTGCCCCTGAGGTAATTAACATTAACATATATATATATATATGAATGCA TGGCTTGGTCTATTTCATAGCTAGTGATAATAAATTAAATGACGGATCAAGAAATTTCATCTTGTATAACTAGTTTTAAC GTACGTACATATGAAAAATTGCAGGTCATGTCTGAATTGGCTCCATATGTTATGCTAGCTGAGAAGTTGGGTCGGCTAGC AGTGCAGTTGGTGTCTGGAGGAAGTGGAATCAAATCCGTGAAGGTGGTTTATCGATCGGCTAGGGGGCCAGATGACCTTG ACACACGACTTCTACGAGCGATGATCACAAAAGGGATAATTGAACCGATATCCAATAAAATTGTCAACCTTGTGAATGCT GATTTCACTGCCAAGGAGAAGGGGATTCGCATAAGTGAGGAAAGAGTAGTTGTTGGTTCATCCCCTGAGCAACCAATTGA TTCAATTCAGATACAGATATCCAATGTGGAGTCAAAGTTTGCAAGTGCTGTGTCGTCCGAGAGTGGTGATATAAGCATTG AGGGAAGGGTGAAGTATGGCATGCCCCACTTGACATGTGTGGGATCTTTTGGTGTAGATGTAAGTTTAGAAGGGAATGTC ATCTTGTGCCGCCAGGTGGACCAGCCCGGTATGATTGGGCACGTTGGGAATCTATTGGCTCAACATAATGTCAATGTCAG CTTTATGAGTGTGGGAAGGACATCTCCGAGGAAGATGGCGATAATGGCTATTGGTGTTGATGAAGAACCAAACAAAGAAG CTCTTCACAACATTGGATCTGTGCCTGCTATCGAAGAGTTTGTCTTTCTCAAACTGTAGCTTCACAGTCACACTTGAACA ATCCCATTTTTAGACACTCAAACAGGGTACACACCCATGAGTATTCCCTTGTTCTCTTCATTTTTGTTTTTCTACTCCAT CACATTGCATATTATATTTATCATCATTTATATTTCTTCTATCCATTTCTCTCTGTTTCTAATATGAAACATGCTTTCTG CTCACAGAGAGTGAACCTCAAGATTAAGCTAGGTCCGAAGAATTCAAACCCAGTCTTAGGTGCTTAATTACATAATAAAG TAATACTTTGTCAAATAACTTTTTTCCCGACCCCTTAATCATAGCTTCAATCGTACGCCAATTTATAAACAAAGTAATTG GCAAAGTTAAATATCACGAAGCCCACAAGCCTCCATATAGGTCAGTCATCTTAATGTACGAGCACAAACTTTTAAGGTAT CGAGTCTAAAAGACGAAGTGCAATGTTCTTCCACAATATGTATGTATTATGTTCGACCAATTTAGAATTTGAAGTATCAG CATGCCAAAAAATTATTGTTTCCAGTCTATTATCCTCTTAACCGGTCACTTGTCCTTATTTTTAAAACATCTAAAATTTT GTTTGATCAAATCTATTTAAAAG
CDS sequence (LotjaGi3g1v0001700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCATCGGCTTGTACCAAATCCGTTTTCACCTCCTCTGCAACTGCAAGTTTACATTGTCCCACTACTCCCACCAG AGGAAGACCCTCTGTCGTTTCATTCCCCAAACGCAACATCGTTTTAACCTCCTCATACAAGCTCTCTCATTCTCAATGCG CCGTCAACAAAACGCGCTGCAAATCCGACGGCGGAGAAGGTATTTCAAGGCCAAGCATCTTGGTTTCTGAGAAGCTCGGA GAGGCGGGGCTCCAAGTGCTGCGCGATGTGGGACAAGTGGAATGCTCCTACGACCTCTCCCCTCAAGACCTCTGCTCCAA GATCTCCTCCTTCGACGCCTTGATTGTCAGGAGCGGCACCAAGGTCACCAGGGAGGTTTTCCAAGGCGCCAAGGGAAGGT TGAAGGTGGTGGGCAGAGCCGGCGTTGGAATCGACAACGTGGACCTTGAAGCCGCCACCCAATACGGTTGCCTGGTGGTG AATGCACCCACCGCGAACACCATCGCCGCGGCGGAGCACGCAGTGGCTCTTCTGGCTGCCATGGCGAGGAACATCCCACG CGCCGACGCGTCCCTCAAAGCAGGGAAGTGGCAGAGGAACAAGTATGTGGGAGCGTCCATGGTTGGGAAGACGCTAGCGA TCATGGGGTTTGGGAAAGTTGGGTCTGAGGTGGCGCGTCGTGCGAAAGGGTTGGGGATGAACGTGGTTGCGCATGACCCT TATGCCCCTGCAGACAGGGCACGCGCCATTGGCGTTGATCTTGTGTCGTTTGATCACGCCATCTCCGCCGCTGATTTCAT TTCTCTCCACATGCCTCTCACTCCCACCACTGATAAGATCTTCAATGAGGATACTTTTGCCAAGATGAAGAAAGGTGTTC GCATTATCAATGTTGCGAGAGGCGGAGTTATTGATGAAGATGCGTTGGTGAAAGCGCTTGATAGTGGACTAGTTGCTCAG GCTGCACTTGATGTGTTCACCGAGGAGCCTCCATCGAAAGATAGTAAATTAGTGCAGCATGAGAATGTGACGGTTACGCC ACACCTTGGAGCTAGCACCAAAGAGGCACAAGAAGGTGTAGCAGTTGAAATAGCAGAAGCTGTGGTTGGAGCATTGAGAG GGGAACTTTCAGCAACTGCTGTCAATGCTCCTATGGTTGCCCCTGAGGTCATGTCTGAATTGGCTCCATATGTTATGCTA GCTGAGAAGTTGGGTCGGCTAGCAGTGCAGTTGGTGTCTGGAGGAAGTGGAATCAAATCCGTGAAGGTGGTTTATCGATC GGCTAGGGGGCCAGATGACCTTGACACACGACTTCTACGAGCGATGATCACAAAAGGGATAATTGAACCGATATCCAATA AAATTGTCAACCTTGTGAATGCTGATTTCACTGCCAAGGAGAAGGGGATTCGCATAAGTGAGGAAAGAGTAGTTGTTGGT TCATCCCCTGAGCAACCAATTGATTCAATTCAGATACAGATATCCAATGTGGAGTCAAAGTTTGCAAGTGCTGTGTCGTC CGAGAGTGGTGATATAAGCATTGAGGGAAGGGTGAAGTATGGCATGCCCCACTTGACATGTGTGGGATCTTTTGGTGTAG ATGTAAGTTTAGAAGGGAATGTCATCTTGTGCCGCCAGGTGGACCAGCCCGGTATGATTGGGCACGTTGGGAATCTATTG GCTCAACATAATGTCAATGTCAGCTTTATGAGTGTGGGAAGGACATCTCCGAGGAAGATGGCGATAATGGCTATTGGTGT TGATGAAGAACCAAACAAAGAAGCTCTTCACAACATTGGATCTGTGCCTGCTATCGAAGAGTTTGTCTTTCTCAAACTGT AG
Protein sequence (LotjaGi3g1v0001700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSACTKSVFTSSATASLHCPTTPTRGRPSVVSFPKRNIVLTSSYKLSHSQCAVNKTRCKSDGGEGISRPSILVSEKLG EAGLQVLRDVGQVECSYDLSPQDLCSKISSFDALIVRSGTKVTREVFQGAKGRLKVVGRAGVGIDNVDLEAATQYGCLVV NAPTANTIAAAEHAVALLAAMARNIPRADASLKAGKWQRNKYVGASMVGKTLAIMGFGKVGSEVARRAKGLGMNVVAHDP YAPADRARAIGVDLVSFDHAISAADFISLHMPLTPTTDKIFNEDTFAKMKKGVRIINVARGGVIDEDALVKALDSGLVAQ AALDVFTEEPPSKDSKLVQHENVTVTPHLGASTKEAQEGVAVEIAEAVVGALRGELSATAVNAPMVAPEVMSELAPYVML AEKLGRLAVQLVSGGSGIKSVKVVYRSARGPDDLDTRLLRAMITKGIIEPISNKIVNLVNADFTAKEKGIRISEERVVVG SSPEQPIDSIQIQISNVESKFASAVSSESGDISIEGRVKYGMPHLTCVGSFGVDVSLEGNVILCRQVDQPGMIGHVGNLL AQHNVNVSFMSVGRTSPRKMAIMAIGVDEEPNKEALHNIGSVPAIEEFVFLKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| PANTHER | 49 | 613 | 565 | 0.0 | – | |
| PANTHER | 49 | 613 | 565 | 0.0 | – | |
| SUPERFAMILY | 70 | 203 | 134 | 1.13E-34 | – | |
| CDD | 73 | 375 | 303 | 9.7972E-166 | – | |
| TIGRFAM | 73 | 611 | 539 | 9.9E-170 | ||
| Pfam | 73 | 382 | 310 | 5.3E-36 | ||
| Gene3D | 74 | 374 | 301 | 1.2E-112 | – | |
| Gene3D | 166 | 348 | 183 | 1.2E-112 | – | |
| SUPERFAMILY | 169 | 351 | 183 | 1.6E-58 | ||
| Pfam | 175 | 350 | 176 | 4.0E-63 | ||
| ProSitePatterns | 212 | 239 | 28 | - | ||
| ProSitePatterns | 260 | 282 | 23 | - | ||
| ProSitePatterns | 289 | 305 | 17 | - | ||
| SUPERFAMILY | 388 | 535 | 148 | 3.92E-22 | ||
| Gene3D | 388 | 539 | 152 | 4.5E-17 | ||
| SUPERFAMILY | 531 | 609 | 79 | 1.43E-13 | – | |
| Gene3D | 540 | 613 | 74 | 7.7E-15 | – | |
| Pfam | 541 | 596 | 56 | 6.6E-9 | ||
| ProSiteProfiles | 541 | 613 | 73 | 10.425 | ||
| CDD | 542 | 613 | 72 | 5.19757E-21 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphoglycerate dehydrogenase activity | Catalysis of the reaction: 3-phosphoglycerate + NAD+ = 3-phosphohydroxypyruvate + NADH + H+. | ||
| Biological process | L-serine biosynthetic process | The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. | ||
| Molecular function | NAD binding | Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0001700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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