Domain Predictions — View

Description

IPR029753 is a D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site.

<p>A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related [[cite:PUB00000187], [cite:PUB00000212], [cite:PUB00002643], [cite:PUB00003316]]. All these enzymes have similar enzymatic activities and are structurally related.</p> <p>This entry includes two conserved sites that contain a number of conserved charged residues, some of which may play a role in the catalytic mechanism.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 13

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0130969.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: d-3-phosphoglycerate dehydrogenase-like isoform X2 [Cicer arietinum] gi\|502127464\|ref\|XP_004499721.1\|	Domains G3DSA:3.40.50.720 IPR006139 IPR006140 IPR016040 IPR029753 PF00389 PF02826 PS00671 PTHR10996 PTHR10996:SF108 SSF51735 SSF52283 cd12175	13
Lj0g3v0310809.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–		Domains G3DSA:3.40.50.720 IPR006139 IPR006140 IPR016040 IPR029752 IPR029753 PF00389 PF02826 PS00065 PS00670 PS00671 PTHR10996 PTHR10996:SF159 SSF51735 SSF52283 SignalP-TM_GRAM_POSITIVE cd12173	17
Lj0g3v0310819.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Glycine max] gi\|356521735\|ref\|XP_003529507.1\|	Domains G3DSA:3.30.1330.90 G3DSA:3.40.50.720 IPR006139 IPR006140 IPR006236 IPR016040 IPR029009 IPR029752 IPR029753 PF00389 PF02826 PS00065 PS00670 PS00671 PTHR10996 PTHR10996:SF159 SSF143548 SSF51735 SSF52283 SignalP-TM_GRAM_POSITIVE TIGR01327 cd12173	22
Lj2g3v1014170.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Formate dehydrogenase [Lotus japonicus] gi\|211970690\|emb\|CAR98204.1\|	Domains G3DSA:3.40.50.720 IPR006139 IPR006140 IPR016040 IPR029752 IPR029753 IPR033689 MF_03210 NON_CYTOPLASMIC_DOMAIN PF00389 PF02826 PS00065 PS00670 PS00671 PTHR10996 PTHR10996:SF171 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF51735 SSF52283 SignalP-TM_GRAM_POSITIVE cd05302	24
Lj2g3v1014180.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Formate dehydrogenase [Lotus japonicus] gi\|211970690\|emb\|CAR98204.1\|	Domains G3DSA:3.40.50.720 IPR006139 IPR006140 IPR016040 IPR029752 IPR029753 IPR033689 MF_03210 NON_CYTOPLASMIC_DOMAIN PF00389 PF02826 PS00065 PS00670 PS00671 PTHR10996 PTHR10996:SF171 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF51735 SSF52283 SignalP-TM_GRAM_POSITIVE cd05302	24
Lj5g3v2113470.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Glycine max] gi\|356536156\|ref\|XP_003536605.1\|	Domains G3DSA:3.40.50.720 IPR006139 IPR006140 IPR015878 IPR016040 IPR029752 IPR029753 PF00389 PF02826 PS00065 PS00670 PS00671 PTHR10996 PTHR10996:SF159 SM00997 SSF51735 SSF52283 cd12173	18
Lj5g3v2113470.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Glycine max] gi\|356536156\|ref\|XP_003536605.1\|	Domains G3DSA:3.30.1330.90 G3DSA:3.30.70.260 G3DSA:3.40.50.720 IPR002912 IPR006139 IPR006140 IPR006236 IPR015878 IPR016040 IPR029009 IPR029752 IPR029753 PF00389 PF01842 PF02826 PS00065 PS00670 PS00671 PS51671 PTHR10996 PTHR10996:SF159 SM00997 SSF143548 SSF51735 SSF52283 SSF55021 TIGR01327 cd04902 cd12173	29
LotjaGi2g1v0247200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Formate dehydrogenase; TAIR: AT5G14780.1 formate dehydrogenase; Swiss-Prot: sp\|Q07511\|FDH_SOLTU Formate dehydrogenase, mitochondrial; TrEMBL-Plants: tr\|B6VPZ9\|B6VPZ9_LOTJA Formate dehydrogenase, mitochondrial; Found in the gene: LotjaGi2g1v0247200	Domains G3DSA:3.40.50.720 IPR006139 IPR006140 IPR029752 IPR029753 IPR033689 IPR036291 MF_03210 NON_CYTOPLASMIC_DOMAIN PF00389 PF02826 PS00065 PS00670 PS00671 PTHR42938 PTHR42938:SF26 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF51735 SSF52283 SignalP-TM cd05302	24
LotjaGi3g1v0001700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	D-3-phosphoglycerate dehydrogenase; TAIR: AT1G17745.1 D-3-phosphoglycerate dehydrogenase; Swiss-Prot: sp\|O04130\|SERA2_ARATH D-3-phosphoglycerate dehydrogenase 2, chloroplastic; TrEMBL-Plants: tr\|A0A1J7IRI9\|A0A1J7IRI9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0001700	Domains G3DSA:3.30.1330.90 G3DSA:3.30.70.260 G3DSA:3.40.50.720 IPR002912 IPR006139 IPR006140 IPR006236 IPR029009 IPR029752 IPR029753 IPR036291 PF00389 PF01842 PF02826 PS00065 PS00670 PS00671 PS51671 PTHR42938 PTHR42938:SF22 SSF143548 SSF51735 SSF52283 SSF55021 SignalP-TM TIGR01327 cd04902 cd12173	28
LotjaGi3g1v0335100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	D-3-phosphoglycerate dehydrogenase; TAIR: AT1G72190.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein; Swiss-Prot: sp\|O29445\|SERA_ARCFU D-3-phosphoglycerate dehydrogenase; TrEMBL-Plants: tr\|A0A0B2QT46\|A0A0B2QT46_GLYSO D-3-phosphoglycerate dehydrogenase; Found in the gene: LotjaGi3g1v0335100	Domains G3DSA:3.40.50.720 IPR006139 IPR006140 IPR029753 IPR036291 PF00389 PF02826 PS00671 PTHR42938 PTHR42938:SF25 SSF51735 SSF52283 cd12175	13
LotjaGi3g1v0335100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	D-3-phosphoglycerate dehydrogenase; TAIR: AT1G72190.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein; Swiss-Prot: sp\|O29445\|SERA_ARCFU D-3-phosphoglycerate dehydrogenase; TrEMBL-Plants: tr\|A0A0B2QT46\|A0A0B2QT46_GLYSO D-3-phosphoglycerate dehydrogenase; Found in the gene: LotjaGi3g1v0335100	Domains G3DSA:3.40.50.720 IPR006139 IPR006140 IPR029753 IPR036291 PF00389 PF02826 PS00671 PTHR42938 PTHR42938:SF25 SSF51735 SSF52283 cd12175	13
LotjaGi3g1v0343100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	D-3-phosphoglycerate dehydrogenase; TAIR: AT1G17745.1 D-3-phosphoglycerate dehydrogenase; Swiss-Prot: sp\|O04130\|SERA2_ARATH D-3-phosphoglycerate dehydrogenase 2, chloroplastic; TrEMBL-Plants: tr\|I1KG47\|I1KG47_SOYBN D-3-phosphoglycerate dehydrogenase; Found in the gene: LotjaGi3g1v0343100	Domains G3DSA:3.30.1330.90 G3DSA:3.30.70.260 G3DSA:3.40.50.720 IPR002912 IPR006139 IPR006140 IPR006236 IPR029009 IPR029752 IPR029753 IPR036291 PF00389 PF01842 PF02826 PS00065 PS00670 PS00671 PS51671 PTHR42938 PTHR42938:SF22 SSF143548 SSF51735 SSF52283 SSF55021 SignalP-TM TIGR01327 cd04902 cd12173 mobidb-lite	29
LotjaGi5g1v0327800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	D-3-phosphoglycerate dehydrogenase; TAIR: AT4G34200.1 D-3-phosphoglycerate dehydrogenase; Swiss-Prot: sp\|O49485\|SERA1_ARATH D-3-phosphoglycerate dehydrogenase 1, chloroplastic; TrEMBL-Plants: tr\|I1LEI9\|I1LEI9_SOYBN D-3-phosphoglycerate dehydrogenase; Found in the gene: LotjaGi5g1v0327800	Domains G3DSA:3.30.1330.90 G3DSA:3.30.70.260 G3DSA:3.40.50.720 IPR002912 IPR006139 IPR006140 IPR006236 IPR015878 IPR029009 IPR029752 IPR029753 IPR036291 PF00389 PF01842 PF02826 PS00065 PS00670 PS00671 PS51671 PTHR42938 PTHR42938:SF21 SM00997 SSF143548 SSF51735 SSF52283 SSF55021 TIGR01327 cd04902 cd12173	29

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd12173	CDD	1	7.69