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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0498000 |
| Transcript ID | LotjaGi3g1v0498000.4 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH; TAIR: AT1G05910.1 cell division cycle protein 48-related / CDC48-like protein; Swiss-Prot: sp|F4IAE9|Y1591_ARATH ATPase family AAA domain-containing protein At1g05910; TrEMBL-Plants: tr|K7LT69|K7LT69_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0498000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91665428..91670065) extracted from Lotus japonicus Gifu genome v1.2.
ATATTTCAGAGACCCACATATCGACAATTGAGAAACCGGATTAACAAGGTCAGTCGGAATGATTTAATGTCTTCTAAGCG CAAAAGAACAGTGGAGACTAATGCAAGACCTCTACGTGAAGGTTTACGACCTCGTCGTTCAAAGGATGCTGCAAGAAAAC AAATAATTTTAGAGTCAGATGATGAGCAAAACCTTTCAGAAGACAAGGTTGAACAAGATGAAGCAGAAAATGGAAATGAT GTCGAGGAAAATGATGCAGATGATGGTGAAAATGAGGATGAGGGAGATGCTGAGGGTGAAGATGAAGGAGAGGATGAAGG TGATGAAGATGGTGATGATGAAGAGGGTGAAGATGAAGGAGAGGATGAAGGTGAGGAAGAACAGGATGGAAGAAGGCGCT ATGATCTGCGAAATCGTCCTGATGTCCGCAGGTTCTCTATGGATGAAGGGAAGGCCCAGCCAAGATCTCCTAGAAGAGTA TTGCATCAAGGTATGGGAACTAAGGTCAGCAGGGATGTAAGAAAGGGTGGATCACGAGTTCATAAGCGTCACCGCTCAGC TAGACTTGAAGATTCTGATGACTCCCTTCTCGTGGATGAGTTGGACCAAGGCCCTGCTATTCCATGGGGGCGAGGTGGCA GTAGATCTGGCCCACCTTTTCTTTTTGGGGGCTTGGACACGCATGGAACAACAACATGGGGATTAAATCTTGCTGCATCA GGTTGGGGTCATCAGGCTGATGCTTTGGCTTCTCTAACATCTGGGATTCAAACTGCTGGGCCAAGCTCTAAAGGAGGGGC AGATATTCAACCCTTACAGATTGATGACAGTGTTAGTTTTGATGATATAGGTGGGCTCTCTGAATACATTGATGCTCTAA AGGAAATGGTTTTCTTTCCATTGTTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGTGTGTTGTTG TGCGGGCCCCCTGGCACAGGGAAAACATTAATTGCAAGAGCTTTGGCTTGTGCTGCTTCAAAAGCTGGACAAAAGGTTAG CTTTTACATGCGCAAAGGAGCGGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAGTTGAAACTACTCTTTGAGG AAGCACAAAGGAATCAGCCTTCTATTATCTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGGTCTAGCAAGCAAGAG CAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGATTCCCGTGGACAAGTTGTTTTAATTGG AGCTACCAATAGGATTGATGCCATTGATGGAGCCTTGCGACGTCCTGGTAGATTTGATCGTGAGTTTAACTTTTCCTTGC CTGGTTGTGAGGCACGTGCTGAAATATTAGGCATCCATACTCGTAAGTGGAAGCATCCTCCTTCAAAGGAACTGAAAGGG GAGCTTGCAGCTAGCTGTGTAGGTTATTGTGGTGCGGATCTAAAGGCTCTCTGTACTGAAGCTGCCATCCGTGCTTTCCG TGAAAAATATCCACAGGTTTACACAAGTGATGACAAATTTCTCATAGATGTTGATTCTATCAAGGTAGAAAAGTATCATT TTATTGACGCAATGTCTACAATTACTCCTGCTGCTCATAGGGGAGCTATTGTGCACTCTAGGCCATTGTCTCTAGTAGTT CAACCTTGTCTTCAGAGACATTTAGAGAAAACTATGAGCATCATATCTGATATTTTCCCTCCAGTATCTGTTGCATCAGA GTTGACCAAACTTTCAATGCTTTCATATGGGTCTGCAATTCCACTTGTGTATCGGCCTAGACTTCTACTTTGTGGCGGTG AAGGTACAGGGCTGGTAATTATCTTGGAACCTTTTAATATTATTGAAAGTTTTGCTTCACAACAACTGAATACTGAATAT ACTTACTGATCTAGTTTAACAGGATCATCTTGGGCCTGCTGTTTTACATGAACTGGAAAAATTTCCTGTACATTCATTAG GACTTCCATCACTTCTGTCAGATCCTAGTGCTAAGACACCGGAGGAGGCATTGGTACATATATTTGGTGAAGCAAGAAGA ACAACACCATCAATTCTCTATATATCGCAGTTTGATGTTTGGTGGGAAACTGTGAGTGCATATCTTAGTTATTTGTGAAT ATGTTTGCTAGATGAACTGATATGCATGCTCAAAATTTGCTTCTCAGTCGGAGAGGTTTCCTAATATTGTATTGCTACAT GTTTGTGGACTGGTTTTGATTGGTTTATCAATCTTGCAGGCTCATGAACAGCTCAGAGCTGTTCTCTTGACTCTTTTAGA TGAATTGCCATCTGACTTACCTATCCTACTACTTGGGACAACCTCAGTTACACTTGTGGAAGTTGACGAAGTGCCCACTT CAGTCTTCCCTCATCGCTCAGTGTACGATTGATATAATTTACAGGAAATATTTGATTTGAGTTTCACGGCAATTTTATTC TTTAAACCAATTTGGTTCTATACAATTACTTTGTTCTAAATGGATGGTATTGTATGGTGGAAATTAGCAATAACATGGCT CAACAAGAATGTGTTTTTGTTTAGAAAAATAAATCTTATGTTTGTTGATGTGGAGCAGATGTTTTGGGAAGCTTTTCTTT CTTTTTTTCAATCTAAGTTCCTGATTAATTTTTCTCAACATCGAACTATATTGAAAAATAGACCAAAAGTCTACCACATT ACTGTCCATGCATCTCCTCGCTATTAAATGTATTTCAGATGGCTAAGCAATCGGTAAAAATCTCATCATTGCAAAATGCT AATGTTTCTGATCCGTATTTAGTGCCATTTTTCTTTACCCGAGTTTCTATAGTTGGTTGTTCTCACAAATTTTTGAATAA TAATTGTAGGTTTAAAGGTCAAAGTTGAAAGTGTCTAAGAATATCAGTTCATCATTATTCTATAAATCTGGAAATTTATT CATGCATGAGTGTTGGTTTCTGGTTATATGCTCACCCTCTTTTCCTTTTGGACAGTTATCAAGTGAACTTGCCATCTACT GAAGATAGGACTTTATTTTTCGATCGTTTAATAGAAGCTGCCATGTCAGTACTGTTAGAGGGAATCAGCAAGAAATCCCA AGATACAAGATGCCATTCTGAACTTCCGAAGGCTCCAAAATTGGTGAGTGGTCCAAAGGTGTCCGAGCTAAAAGCAAAGG TGGAAGCTGAGCAACATGCACTTCGTAGATTGCGAATGTGTCTTAGGGATATTTGCAACCGGTATGTTAATATATGTTTA ATGTACAATTTTTTGCTTTACTTGCATATCAACTTTAATTATGTTAATCTCTTTCTCTCTCTCAGTATGTTTTTGTCTGT TTTGCAGGATATTATATGACAAACGATTTAATGCGTTCCATTTTCCAGTGTCTGATGAAGATGCACCTAATTATCGCTCA ATCATACAGAACCCAATGGACATGGCTACTGTCTTGCAACATGTTGATAATGGCCACTATATCACATGTGCTGCATTCCT GCAGGACATTGATCTTATTGTTTCCAATGCAAAGGCATGTATCTAGTGCCTAATTGGTTTTTTTTTTTTTTTTAATTTTT GGTTGGGTTGGGTCCTATGTGTGTGCTTGTGTGTGACTTGGAGAATGCTTGATACAATACTTCAATATTTAAATCATGTA ACAACTTTGATCTTTCTTTTGCAACTCAGACTTACAATGGAGAGGACTACAATGGTGCTAGGATTGTTAGTAGAGCTTGT GAACTCCGTGATGCGGTGAATAGACTTTCTTTTGTCTTAACTTTTACATTGCTATGTTTTTTATGTTGACCATTATTGTC TGGAAAATGCGTCTCACTTACTCTTTTTATTACTTTTTTCAGGTGCAGGGGATGCTCTCACAGATGGATCCAGCACTGGT TGCATACTGTGACAAGATTGCTAGCGAAGGTGGTCCAGTTCATTTGCCTGATGAGTTAAGAGATTCTACATTTCCTGTTA CTCCTGTGGTTCAACTAGGTACTGCTACTACCAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAACATGGAT AAGAGTTATGAAGCACTGAAGCGGACTAAGAAGACAAGCGATTTTCCTGCAGGTATAAAATGGCTATGCAGTATATGATT TCTCTCTCAATGGAAATCAGTTGTAATGCAAATGGTTTTTTTGATAAGCTTCCATTTCAAATGCTGATTGTTAGTTTTTT CTTTTTCTGTTTTTTAAGCAGAAGACAAATCACAGGAAGAGTCAATACCATCAAAGTCCTCCCAGGAGCATCAGACAAGT GACATGGATTCTGAACGGCCGGAACCTGTAACCATTGATGGAAATTCAAACGGAACTGGAACAAATAGCTTTGCTGATGA TAGCAGCCTTAATGATGTCACAATGCTTGATGATGAATTTTCAAGCCAAGTGGAGTCCGTCAAGCAGCATTTTGTTAAGC GCAGTGAAAATTACAGCCTTCCACAGCTTGAAAGGATTTACACGAGAATCATGAAGGGTGTATTCGAAACCAAAGAAAAA GGAATGAATGATGATGATATTAAAACTTCAGTTGTGAGGTTTTTGTTGAAATTTGTAGAGGATGATGCAAATTTCTGA
CDS sequence (LotjaGi3g1v0498000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCTAAGCGCAAAAGAACAGTGGAGACTAATGCAAGACCTCTACGTGAAGGTTTACGACCTCGTCGTTCAAAGGA TGCTGCAAGAAAACAAATAATTTTAGAGTCAGATGATGAGCAAAACCTTTCAGAAGACAAGGTTGAACAAGATGAAGCAG AAAATGGAAATGATGTCGAGGAAAATGATGCAGATGATGGTGAAAATGAGGATGAGGGAGATGCTGAGGGTGAAGATGAA GGAGAGGATGAAGGTGATGAAGATGGTGATGATGAAGAGGGTGAAGATGAAGGAGAGGATGAAGGTGAGGAAGAACAGGA TGGAAGAAGGCGCTATGATCTGCGAAATCGTCCTGATGTCCGCAGGTTCTCTATGGATGAAGGGAAGGCCCAGCCAAGAT CTCCTAGAAGAGTATTGCATCAAGGTATGGGAACTAAGGTCAGCAGGGATGTAAGAAAGGGTGGATCACGAGTTCATAAG CGTCACCGCTCAGCTAGACTTGAAGATTCTGATGACTCCCTTCTCGTGGATGAGTTGGACCAAGGCCCTGCTATTCCATG GGGGCGAGGTGGCAGTAGATCTGGCCCACCTTTTCTTTTTGGGGGCTTGGACACGCATGGAACAACAACATGGGGATTAA ATCTTGCTGCATCAGGTTGGGGTCATCAGGCTGATGCTTTGGCTTCTCTAACATCTGGGATTCAAACTGCTGGGCCAAGC TCTAAAGGAGGGGCAGATATTCAACCCTTACAGATTGATGACAGTGTTAGTTTTGATGATATAGGTGGGCTCTCTGAATA CATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTGTTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTA GGGGTGTGTTGTTGTGCGGGCCCCCTGGCACAGGGAAAACATTAATTGCAAGAGCTTTGGCTTGTGCTGCTTCAAAAGCT GGACAAAAGGTTAGCTTTTACATGCGCAAAGGAGCGGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAGTTGAA ACTACTCTTTGAGGAAGCACAAAGGAATCAGCCTTCTATTATCTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGGT CTAGCAAGCAAGAGCAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGATTCCCGTGGACAA GTTGTTTTAATTGGAGCTACCAATAGGATTGATGCCATTGATGGAGCCTTGCGACGTCCTGGTAGATTTGATCGTGAGTT TAACTTTTCCTTGCCTGGTTGTGAGGCACGTGCTGAAATATTAGGCATCCATACTCGTAAGTGGAAGCATCCTCCTTCAA AGGAACTGAAAGGGGAGCTTGCAGCTAGCTGTGTAGGTTATTGTGGTGCGGATCTAAAGGCTCTCTGTACTGAAGCTGCC ATCCGTGCTTTCCGTGAAAAATATCCACAGGTTTACACAAGTGATGACAAATTTCTCATAGATGTTGATTCTATCAAGGT AGAAAAGTATCATTTTATTGACGCAATGTCTACAATTACTCCTGCTGCTCATAGGGGAGCTATTGTGCACTCTAGGCCAT TGTCTCTAGTAGTTCAACCTTGTCTTCAGAGACATTTAGAGAAAACTATGAGCATCATATCTGATATTTTCCCTCCAGTA TCTGTTGCATCAGAGTTGACCAAACTTTCAATGCTTTCATATGGGTCTGCAATTCCACTTGTGTATCGGCCTAGACTTCT ACTTTGTGGCGGTGAAGGTACAGGGCTGGATCATCTTGGGCCTGCTGTTTTACATGAACTGGAAAAATTTCCTGTACATT CATTAGGACTTCCATCACTTCTGTCAGATCCTAGTGCTAAGACACCGGAGGAGGCATTGGTACATATATTTGGTGAAGCA AGAAGAACAACACCATCAATTCTCTATATATCGCAGTTTGATGTTTGGTGGGAAACTGCTCATGAACAGCTCAGAGCTGT TCTCTTGACTCTTTTAGATGAATTGCCATCTGACTTACCTATCCTACTACTTGGGACAACCTCAGTTACACTTGTGGAAG TTGACGAAGTGCCCACTTCAGTCTTCCCTCATCGCTCAGTTTATCAAGTGAACTTGCCATCTACTGAAGATAGGACTTTA TTTTTCGATCGTTTAATAGAAGCTGCCATGTCAGTACTGTTAGAGGGAATCAGCAAGAAATCCCAAGATACAAGATGCCA TTCTGAACTTCCGAAGGCTCCAAAATTGGTGAGTGGTCCAAAGGTGTCCGAGCTAAAAGCAAAGGTGGAAGCTGAGCAAC ATGCACTTCGTAGATTGCGAATGTGTCTTAGGGATATTTGCAACCGGATATTATATGACAAACGATTTAATGCGTTCCAT TTTCCAGTGTCTGATGAAGATGCACCTAATTATCGCTCAATCATACAGAACCCAATGGACATGGCTACTGTCTTGCAACA TGTTGATAATGGCCACTATATCACATGTGCTGCATTCCTGCAGGACATTGATCTTATTGTTTCCAATGCAAAGACTTACA ATGGAGAGGACTACAATGGTGCTAGGATTGTTAGTAGAGCTTGTGAACTCCGTGATGCGGTGCAGGGGATGCTCTCACAG ATGGATCCAGCACTGGTTGCATACTGTGACAAGATTGCTAGCGAAGGTGGTCCAGTTCATTTGCCTGATGAGTTAAGAGA TTCTACATTTCCTGTTACTCCTGTGGTTCAACTAGGTACTGCTACTACCAGAATGAGTGCTCGACTTCGTCATGTCCAAC CAGAGGTTAACATGGATAAGAGTTATGAAGCACTGAAGCGGACTAAGAAGACAAGCGATTTTCCTGCAGCAGAAGACAAA TCACAGGAAGAGTCAATACCATCAAAGTCCTCCCAGGAGCATCAGACAAGTGACATGGATTCTGAACGGCCGGAACCTGT AACCATTGATGGAAATTCAAACGGAACTGGAACAAATAGCTTTGCTGATGATAGCAGCCTTAATGATGTCACAATGCTTG ATGATGAATTTTCAAGCCAAGTGGAGTCCGTCAAGCAGCATTTTGTTAAGCGCAGTGAAAATTACAGCCTTCCACAGCTT GAAAGGATTTACACGAGAATCATGAAGGGTGTATTCGAAACCAAAGAAAAAGGAATGAATGATGATGATATTAAAACTTC AGTTGTGAGGTTTTTGTTGAAATTTGTAGAGGATGATGCAAATTTCTGA
Protein sequence (LotjaGi3g1v0498000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSKRKRTVETNARPLREGLRPRRSKDAARKQIILESDDEQNLSEDKVEQDEAENGNDVEENDADDGENEDEGDAEGEDE GEDEGDEDGDDEEGEDEGEDEGEEEQDGRRRYDLRNRPDVRRFSMDEGKAQPRSPRRVLHQGMGTKVSRDVRKGGSRVHK RHRSARLEDSDDSLLVDELDQGPAIPWGRGGSRSGPPFLFGGLDTHGTTTWGLNLAASGWGHQADALASLTSGIQTAGPS SKGGADIQPLQIDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKA GQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQ VVLIGATNRIDAIDGALRRPGRFDREFNFSLPGCEARAEILGIHTRKWKHPPSKELKGELAASCVGYCGADLKALCTEAA IRAFREKYPQVYTSDDKFLIDVDSIKVEKYHFIDAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKTMSIISDIFPPV SVASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEA RRTTPSILYISQFDVWWETAHEQLRAVLLTLLDELPSDLPILLLGTTSVTLVEVDEVPTSVFPHRSVYQVNLPSTEDRTL FFDRLIEAAMSVLLEGISKKSQDTRCHSELPKAPKLVSGPKVSELKAKVEAEQHALRRLRMCLRDICNRILYDKRFNAFH FPVSDEDAPNYRSIIQNPMDMATVLQHVDNGHYITCAAFLQDIDLIVSNAKTYNGEDYNGARIVSRACELRDAVQGMLSQ MDPALVAYCDKIASEGGPVHLPDELRDSTFPVTPVVQLGTATTRMSARLRHVQPEVNMDKSYEALKRTKKTSDFPAAEDK SQEESIPSKSSQEHQTSDMDSERPEPVTIDGNSNGTGTNSFADDSSLNDVTMLDDEFSSQVESVKQHFVKRSENYSLPQL ERIYTRIMKGVFETKEKGMNDDDIKTSVVRFLLKFVEDDANF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 41 | 41 | - | – | |
| MobiDBLite | 1 | 166 | 166 | - | – | |
| PANTHER | 5 | 1077 | 1073 | 0.0 | – | |
| PANTHER | 5 | 1077 | 1073 | 0.0 | – | |
| MobiDBLite | 42 | 103 | 62 | - | – | |
| MobiDBLite | 104 | 134 | 31 | - | – | |
| Gene3D | 252 | 431 | 180 | 1.2E-60 | – | |
| SUPERFAMILY | 255 | 521 | 267 | 3.27E-59 | ||
| SMART | 292 | 433 | 142 | 7.9E-20 | ||
| CDD | 292 | 431 | 140 | 1.3779E-27 | – | |
| Pfam | 296 | 430 | 135 | 3.9E-39 | ||
| ProSitePatterns | 401 | 419 | 19 | - | ||
| Gene3D | 432 | 526 | 95 | 1.3E-17 | – | |
| Pfam | 459 | 495 | 37 | 1.2E-10 | ||
| Gene3D | 566 | 727 | 162 | 2.4E-8 | – | |
| CDD | 576 | 688 | 113 | 5.48519E-4 | – | |
| SUPERFAMILY | 580 | 794 | 215 | 3.69E-11 | ||
| Gene3D | 768 | 896 | 129 | 4.7E-32 | ||
| SUPERFAMILY | 774 | 888 | 115 | 1.57E-26 | ||
| CDD | 776 | 886 | 111 | 3.8006E-54 | – | |
| SMART | 776 | 883 | 108 | 1.9E-19 | ||
| Pfam | 786 | 857 | 72 | 4.5E-15 | ||
| ProSiteProfiles | 799 | 861 | 63 | 15.742 | ||
| PRINTS | 808 | 824 | 17 | 6.7E-8 | ||
| PRINTS | 824 | 842 | 19 | 6.7E-8 | ||
| PRINTS | 842 | 861 | 20 | 6.7E-8 | ||
| MobiDBLite | 949 | 967 | 19 | - | – | |
| MobiDBLite | 949 | 1006 | 58 | - | – | |
| MobiDBLite | 987 | 1006 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0498000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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