Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0536500.1

Overview

Field Value
Gene ID LotjaGi3g1v0536500
Transcript ID LotjaGi3g1v0536500.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Set1/Ash2 histone methyltransferase complex subunit ASH2; TAIR: AT1G51450.1 TRAUCO; Swiss-Prot: sp|Q9C8J7|TRO_ARATH Protein TRAUCO; TrEMBL-Plants: tr|I1LPA8|I1LPA8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0536500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:95303094..95310268) extracted from Lotus japonicus Gifu genome v1.2.

CCCAAACCCAAACCCAAATCCAGTCAACTCGGATTTTGCCCGTTAAATCGGATCGGATTCGGGCGGATACCCATGGGTTT GGGCAAAATTGCCATCCCTAACTCTACCAAGGTTTCACTTTCTTCATCTTCTTCTTTTATAATTCGCATTCTCTTTCAAT TCTCTTCATTCTTCTTTTTCAAATTCAAATTGATTCTCTCTCTCTCTGTAACCCTAGCTTCCATGGATAGCTTACTAGCC ACTTACAAAGACGAAGAAGAAGAAGAAGATGAAGAGGAGGCTCCACCCACAACCACCACCACATCCACCGCCGCCGACGG TGGCGACGGAGGAGGAGTAGCAGTTGGTGCTGACACGGAACCAATACCAATCGACGTTCCACCCGTCGTTACCAGCACTC CCTCAGACACCCAAACAGAACCCCAAAACGACGGCAGATCAGAGCCCGACCCCTCCGACGACCTCTCCTCCGAAGAAGCC GCTTCCGACGGCTCTAAGAAGTCACCGAAACGCGAACTCGACGAGGAACAGCAACCTGCTTCGAAGAAGCAGAAGCCGCT CTCCTCTCTCAGCGCCGCGAATCAGGACTCGCCGGCATTGCCGGAGGGAGACAATGCCCCGGCGAGCACCCCGGCGGCGA CGAATGGCGGGACGACGAATCCGAAGAAATCGAAGAAGAAGAACAACAATGTGTGGGCGACGAAATCGAAGAAAGGGAAG AAGAAGAACAAGGGCAACAACAACAATAACAACAACCACGCCAACAATGGGGAAGACAATGTCCTGATAACTCCCGTTCA GCGGTTTCCGGACAAGGGCGACGACACGCCGGAGATGAAGATATGCTTGTCGAGGGCGTTCAAGGCGGAGAAGGTGGAGC TGAGCGAGGATAGATTGACTGCAGGGAGCACGAAGGGTTACAGAATGGTGAGGGCAACCAGAGGGGTGATGGAAGGTGCG TGGTACTTTGAGATTAAGGTTGTGAAGTTGGGTGAGACTGGGCACACTCGATTGGGGTGGTCCACGGCGAAGGGTGATTT GCAGGCACCGGTTGGGTACGATGGGAATAGCTTTGGGTACAGGGACATTGATGGGAGTAAGATACACAAGGCATTGAGGG AGAAGTATGGGGAGGAAGGGTACAAAGAAGGTGATGTTATTGGGTGCTATATCAATTTGCCTGAGGGAGCCAAGTATGAA CCAACAGCACAAAACTTGGCGTGGTATAAAGGCCAGAAATATGCTTATCCTAAAGATGGTAAGGAAGAACCACCTAAAGT GGTGCCAGGTATGATGTTGTGATTTTAGCTATAATTATGATTTTCACTTGCTGTTTTGTATCTTTAAATTGAGGTAGGAA AAACAGTAGAGAACTTGCTAGGAACGAAAGCGTAGGTGGATAGTGAAAACAAGATATGGAATCATGTTTTTGCAAACTAT ATAGGCTTCTAGGTTACTACTGCAGTACTACTAGGGTGCATGGATCCAGTCCCTCCTTTACAAGGATGAACAATAGGATT GATATATTTGCTACGACCGTGTTTGTGAACATATTGCAAAGGAGGAAAAAGTTTGTTTAGATGTAGTGCTTCTAATCCAT CAAATTCTTCCATCTCAAAAAATGTGGCTTTGGAATGTGAGCAAACCCAAGATATAGTGCTTGCAAGTGATTAGTGTTTA ACTTTAGATACTAATATTTGATTGTTGCTAGGTGTGTTAGTTTAGGGCCAAGGTAAATAGTTCAGTTTTTTAGGGGATGG GGAAGAAGAGAGTGGACCTGACAACCAGTTTTTTTGCACCGGTTCAATTGATTGTGATTAGGTCATTTGGGTATGCACTC AATTCTGTGTCTAATTTCTGTAGTCTGTGAAACTAAATATTGACAAGAGTTCACCAGTGTTGTCAACAATAAGTGGTGGC CAAAAATGTATAGCGAACTGTTTTTGAAGTGGATAGTTTTAGTCCCTGCAGTTGGGTAAGGTTTATTGAGCTATGGTGTG GTGTACGGACTGCCATGTCATCTCACCTTTATGTGGCATTCCACTGCCTGTGTGTCTATTATTGCCGCCTAGGAATAGGA TTATGAAAATAGCTTGTCAGTTGCACGCGATATCGTCTTCCCACACCATTTCCGTCTTAAGATTGCAGATTATTTGCTGT CTTTCAAATTCAAGTAATTGTCTAAAAGAAAGCACTGGTTCAATATTAAACCATAATTAGTTACTGCTTATGTGAGCTTA AGGGAAACAGCATTTTCAACTGAGCGAAAAGACACTGTAATTATTCTGAAGAGGGAGGATAAAAAACCAACCAATCATCA ATAACATGTAATAGAAACATGGTAAGAGCAAAATGTGGAAAGGAACCCCTTATCTCTCAATCTATTGCCCTTCCCACACA TACTACTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACTACACACACTACACACACTATCTAGAATGCCT CTGTTCTTTCAGTCTCACAATTATAGAGAGAAAGAGAGGCATTCATTGGTGTCATTGTGACAAAAGCGGCTTTGACAGTG TATAAAATAGAGGCCTTTTTTCTACTTTCCCTGTATGGGAGAAGAGATATCTGCTCTGTAACCCTGTAAGTTTTATTCCT CCTCTGTCTACAAAATAAAATAAAATCCAGAAAGGGTTTTTTCTAGCCATTTAATGGCATGATTTGCATAATTAACAAGG ACTAGAAGAAGTGAAGGACAATTTGGCTGGAAACCGCCAGAGTAATGACTTAGATTTGATAAAACAGAGACTAGAGTCTC CAGAGAGAAGACAGAGGAGAGAGACCACGAGGACATCACAAGACATCAAAGATAACCCAAGAAATATGCGACAGAGATGA GAGGCCATATGGTTTCCATGACTTTTCTTGCGTGAGTAGGTTGAAACACTATTACATTGTCTAAATTTAGGTGACCATTT GTTGGAGTTGAGGGCAGAATTGGCAGATAAGGAAGTTCTCATATGGTATCCAATTAAGAACAGAGTTTTCACGACAAGTA GAATACCTGCAAAGCCACTGAATACTTTCTGTTATTTCATTGATCAAAGATCTGAACATATTGGATTGGCATTGGCCTTT GTCATGGGTATGACATATTTGGATAAGTGAGATATCAAAGCCACCCATGCATTTTGGCTGGTGGGTCGAGTTGTTAGACA ATAAAACCATGAAGTACAATCTTGAAGATGATTTAAATTTGATCCTGATTCGATTCTATGGGCAGTCATGCCGTAACTCT GTCTTAGAGGTGTTGTATACTATTTTCTATTCCTCAACCTAAATCATGACTGATTGGAATTTGGGGGCACTTGTCGTTTG CTACTTGGGAACCTTGATAGCAGCACATATTTTGTCAGAGGCCCATTAGACATTAGTGATACTCCTTGCAATTAACTGAA AGTGCTGTGGACATTGAGCAACTATATTCCTTGCATATAGTACCCATGTTAAATTTCCCTTGCTTTAAGTTGTATTTTAA GTATCCAATTTATGAATATTCACTTGCTTATAAAAAAGATTATATGAATATTCACTTGGTATGAAATATTGTGCTCTCTG TGCAGGAAGTGAGATATCTTTCTTTAAAAATGGTGTATGCCAAGGGGTAGCTTTCAAGGATCTTTACGGTGGTCGTTACT ATCCTGCTGCTTCAATGTATACTCTCCCCAATGAACCTAACTGCACTGTCAAGTTCAACTTTGGTCCTGACTTTGAATTC TTTCCTGAGGATTTCAATGAGCGGCCAATTCCCAGACCAATGATTGAAGTTCCGTATCAAAGTTTTGACAATCGAGTTGA AAATGGAGAACCTAATGAGAAGAAACCCTAGAAAGTGATGCGTGTTACAATTTAAGTACATGTGCTGCACAGATGGATGA GTTCATATTCTGCTGTAATTTTAGTTGATATTTAAATTGTTTCACCAATGACTAGATTAGTGTTAGTGGTGTTAACTTCT GACAGAAATTGTCCATGTGAAATTCTTCAAATTCCAGTGGGTTCAATCAGATAGCTTGTATTTTCTTTGGCAGTGTCTTT CTCGATATTCTTGCCATCTACTTTTTCTTCTAAGTTACATCTATGTCAGCATGTTCATGTATGAACTATGAATCCATTTT ACGAGCGAGCCTTAGCTCAAATAGTAAGTTTTTATTGACTGATCTAATTTAACAAAAATTGGTTAAAAATTGAAAATTAA TTAAACCAAAACCTAAATAAACTGAGAAGATTAAAATTCTGTTTAGCATTGGGTTGGATTTTGAATTTGATTTCAGGCAT TTATGCTGGCTGAACTGATGGAGAAGACATGATATTTTATAACCAACCACCATACCATAACATCACAAGTTTCCTTTGCC TCTTTCTTATGTTGATATATTTTATTTATGTCAAATGTCAAAACATAGTGTTTCCCAATATATAAATGGGGGTATGGTGT GTGATGCTTGTGTGTTTGTATCAGCAACTGATGCTTCTAATGAATTGGGGAGTTGAGACCCTCTTGAAATGACAATGGAT GCAGAGCTTGGTGCCTCTTGGAAGGGAAAGCTGGTGGTTTCCTGAATGAAGGTCGTTTCTTGATACGTTGCAGGGCTTGC TTGGTGTAGATACTGTGAAGGTAAGGTGCAGCTCTCTCCTTGAACTTGAGAATGAAAAAGAAAATAACTCTAAGAAATAT GAGGATGAGGGTGACTACAGCTAAGTCCCACCATTTTGAATGATCAGTTTTCATCCCAAGCATGGTTGTGAGGATGATTT CTCCTTTCAGCTTTGGGTCCCCAGGTACTAAAGGATCAAACTCCATCCCAATCAGGTCATTCTTGAAAGCTCCCTGCATT GTCCATAATCATTTATTTCATGTCATACACTTAACATGTTAAAAGTTGCTCATAGAGTTATATATTTTACTCTGTTAACA TGCTGAGATAGAAGATATAGACAATGTAGTTTCTTTTTTTTTTCAATCATGTGATCTAGATTTTCTTACTGGACATGTTT GAGAGAATGGTCATGCTCCTTAGTTTACCTGCAATGCCCATGCACCATAATTTATGTATGACATTGGGTAGCGCCAGAAG AATTTTGGAAGATCAGGGATCTGACGGAAATAGCCAGCAGTCATCATCATAACACCCTGCACATACATTTTAATCAGCAT TCAAAGCTAACTACATGACGACCCACATAAAGTGCAAATGGAAACTATATGGAAATTAATACAATGCATGTTTGGAAATT CTTATACAAATGATTATGAAGCCAAAATCAATTCTAAGGAGTATGGTTGTCAAACACTAGTTTTAACTCGTAAATTCGTA TAAGTTTACGATCCTAGGTAACCAAAGCGAGTTACATCGCATGTAAATTCTCTTTTTGATAAACTCTGTGAACTACTTGC GAAGTTCACAAGTTCAACAAAAAATGGAGAAAAATAATTGTTTTACTAAAATACAGTGTTTCATAGCACTACTTTTATTC TTCACAAATTCCTCTCACTTGTGTCCCTTTTCCTATTTTCTCTAATGTTCCTTTGCCTCTTGTGTACCAGAGTGAGCTGG TGCAATATGTATAAAAATTGTCTACAAACCTTGATTTTGGATCTTTCTGTAATAAAAATTATTCTAAGTTTCAAATTATG AATTGATTATGAAATATTGAGAGGATTAAAGATAGTTAGATTTTATTCTTGTTTGAAGATCATAACTTATTTGCTTTCGT TTGAAGTTTTTCAGTATTTTACCTTATGAATTTTGTTAATTTTTTCTTATGAACTTATATTTAGTCATTTTATGAATGAT TTTAACCTGTTCTTATGAAAAATTTTAAATATTACTTTTGCATGAGGAGTCCGAGCTTACAAGTTGAGTTTATGGGCACT CCACGAGATTACGCAAACTCTTGAGTTTGACAACATGGAGAAGCTTATATGAATAGCTTCTAAGTTCCAAAATTGATTAT AATGAAAGAGAAGTTTATCCATACATGCTAATAGTAGTACGAGTTGATAAAATTTAGGAATGATGGAATTTTGGTGGTAG TGATGTTTTATTGGTAGAATACTTAAAATGGGAATAGTAATAGGATTTCAATGGTGGTGGACTGGTGGTGTTGTAATGGT AGAATGCATTTGGCAAGTAGATTATAGAATGCAGAAAGTGTCAACATAGATTTGGCTGAGATGGAGATGGTCCTAAATTG TTAACAAAAAAATAGGCTTATAGTACACTTACAATATATCCTGCTCCTATTATCAATCCCATCAGGAAGTTGGGAACCAA TGAAGCTATGATCATCATGGAGCTCTCTACAACTGCAATGCAGGCCAAAAGGTCCAGGCATATATATGAAAGATGTGAAA ACTCAGGACGAAACTTGACCATATAATAGGTTATAGTTCCAGTAGCAATGGACATAACTGTCACAAAGGGAAAGGAAGAG AGAAAATTTGATAGAATGTAGACTCCAATCCCATAATACCCATTGCGCCTTTCCTTGTAGAACACCTGTATCATTGGGGA AAAAAAAATCATATGCTGACCATAACAGTTTTCTCATGTTTGAAAATCCTTCTATAATTGATTTCCTGTCAAAATCAATT ATAGGAAAAAGCTTTTGTGAGTAGCTTCTAAGATGTCAATTTATTCTTGGAAAAGAGAATCAAACATGCTATTTGACGAG TTGTATCAACGTTTCATACCTTCATTTCTTCTATGAAGGATGGGAATCCTCCGATGGACATGAATGTCATGAAACCTGAT ACAAAAGCACCACATGCTCCTCTTGCAAAAATAGATCTATAACTTGATCCAACTTCAAAAAAGATTGTTCCAACACAGAA AGATAAGGCAACATAGATTGCCATCCTTATCCAGTAGTACCCCACATCTCTAGACATGTTCACAAAAGATCTGCTAGTCA GTGTTGATAGTTGCTTCCACCATCTGGCTTGGCTCTTACTTTTACTTTCAGTATCATGTCCTTCCTGTAACACCATTCAT TGACCTTCATATTTTGATATAAAGTGTTCTTGTTATCTAGTGTACCAACACTATCCCACAAAAAATTGATTCTAACATCT ACCATTGCTTTTATTTGCCAATAGAGTTAGTTAGTACTATATTACTTGGTCCTTG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0536500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTTTGGGCAAAATTGCCATCCCTAACTCTACCAAGGTTTCACTTTCTTCATCTTCTTCTTTTATAATTCGCATTCT CTTTCAATTCTCTTCATTCTTCTTTTTCAAATTCAAATTGATTCTCTCTCTCTCTGTAACCCTAGCTTCCATGGATAGCT TACTAGCCACTTACAAAGACGAAGAAGAAGAAGAAGATGAAGAGGAGGCTCCACCCACAACCACCACCACATCCACCGCC GCCGACGGTGGCGACGGAGGAGGAGTAGCAGTTGGTGCTGACACGGAACCAATACCAATCGACGTTCCACCCGTCGTTAC CAGCACTCCCTCAGACACCCAAACAGAACCCCAAAACGACGGCAGATCAGAGCCCGACCCCTCCGACGACCTCTCCTCCG AAGAAGCCGCTTCCGACGGCTCTAAGAAGTCACCGAAACGCGAACTCGACGAGGAACAGCAACCTGCTTCGAAGAAGCAG AAGCCGCTCTCCTCTCTCAGCGCCGCGAATCAGGACTCGCCGGCATTGCCGGAGGGAGACAATGCCCCGGCGAGCACCCC GGCGGCGACGAATGGCGGGACGACGAATCCGAAGAAATCGAAGAAGAAGAACAACAATGTGTGGGCGACGAAATCGAAGA AAGGGAAGAAGAAGAACAAGGGCAACAACAACAATAACAACAACCACGCCAACAATGGGGAAGACAATGTCCTGATAACT CCCGTTCAGCGGTTTCCGGACAAGGGCGACGACACGCCGGAGATGAAGATATGCTTGTCGAGGGCGTTCAAGGCGGAGAA GGTGGAGCTGAGCGAGGATAGATTGACTGCAGGGAGCACGAAGGGTTACAGAATGGTGAGGGCAACCAGAGGGGTGATGG AAGGTGCGTGGTACTTTGAGATTAAGGTTGTGAAGTTGGGTGAGACTGGGCACACTCGATTGGGGTGGTCCACGGCGAAG GGTGATTTGCAGGCACCGGTTGGGTACGATGGGAATAGCTTTGGGTACAGGGACATTGATGGGAGTAAGATACACAAGGC ATTGAGGGAGAAGTATGGGGAGGAAGGGTACAAAGAAGGTGATGTTATTGGGTGCTATATCAATTTGCCTGAGGGAGCCA AGTATGAACCAACAGCACAAAACTTGGCGTGGTATAAAGGCCAGAAATATGCTTATCCTAAAGATGGTAAGGAAGAACCA CCTAAAGTGGTGCCAGGAAGTGAGATATCTTTCTTTAAAAATGGTGTATGCCAAGGGGTAGCTTTCAAGGATCTTTACGG TGGTCGTTACTATCCTGCTGCTTCAATGTATACTCTCCCCAATGAACCTAACTGCACTGTCAAGTTCAACTTTGGTCCTG ACTTTGAATTCTTTCCTGAGGATTTCAATGAGCGGCCAATTCCCAGACCAATGATTGAAGTTCCGTATCAAAGTTTTGAC AATCGAGTTGAAAATGGAGAACCTAATGAGAAGAAACCCTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0536500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGLGKIAIPNSTKVSLSSSSSFIIRILFQFSSFFFFKFKLILSLSVTLASMDSLLATYKDEEEEEDEEEAPPTTTTTSTA ADGGDGGGVAVGADTEPIPIDVPPVVTSTPSDTQTEPQNDGRSEPDPSDDLSSEEAASDGSKKSPKRELDEEQQPASKKQ KPLSSLSAANQDSPALPEGDNAPASTPAATNGGTTNPKKSKKKNNNVWATKSKKGKKKNKGNNNNNNNHANNGEDNVLIT PVQRFPDKGDDTPEMKICLSRAFKAEKVELSEDRLTAGSTKGYRMVRATRGVMEGAWYFEIKVVKLGETGHTRLGWSTAK GDLQAPVGYDGNSFGYRDIDGSKIHKALREKYGEEGYKEGDVIGCYINLPEGAKYEPTAQNLAWYKGQKYAYPKDGKEEP PKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYTLPNEPNCTVKFNFGPDFEFFPEDFNERPIPRPMIEVPYQSFD NRVENGEPNEKKP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 21 21 - –
Phobius
TRANSMEMBRANE
22 42 21 - –
Phobius
CYTOPLASMIC_DOMAIN
43 493 451 - –
MobiDBLite
mobidb-lite
59 235 177 - –
MobiDBLite
mobidb-lite
106 121 16 - –
PANTHER
PTHR10598
107 481 375 2.6E-124
IPR037353
MobiDBLite
mobidb-lite
122 157 36 - –
MobiDBLite
mobidb-lite
158 174 17 - –
MobiDBLite
mobidb-lite
184 203 20 - –
MobiDBLite
mobidb-lite
204 220 17 - –
MobiDBLite
mobidb-lite
221 235 15 - –
ProSiteProfiles
PS50188
237 456 220 14.799
IPR001870
Gene3D
G3DSA:2.60.120.920
255 469 215 1.5E-61
IPR043136
SUPERFAMILY
SSF49899
258 459 202 5.28E-36
IPR013320
CDD
cd12872
268 455 188 1.38247E-79 –
SMART
SM00449
294 455 162 4.1E-30
IPR003877
Pfam
PF00622
297 372 76 2.1E-10
IPR003877

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0048188
Cellular component Set1C/COMPASS complex A conserved protein complex that catalyzes methylation of histone H3. In Saccharomyces the complex contains Shg1p, Sdc1p, Swd1p, Swd2p, Swd3p, Spp1p, Bre2p, and the trithorax-related Set1p; in mammals it contains the catalytic subunit (SETD1A or SETD1B), WDR5, WDR82, RBBP5, ASH2L/ASH2, CXXC1/CFP1, HCFC1 and DPY30.
Subterm of
GO:0051568
Biological process Histone H3-K4 methylation The modification of histone H3 by addition of one or more methyl groups to lysine at position 4 of the histone.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0536500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…