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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0392200 |
Transcript ID | LotjaGi4g1v0392200.5 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | E3 ubiquitin-protein ligase RGLG2-like protein; TAIR: AT1G67800.1 Copine (Calcium-dependent phospholipid-binding protein) family; Swiss-Prot: sp|Q8LB88|RGLG5_ARATH E3 ubiquitin-protein ligase RGLG5; TrEMBL-Plants: tr|A0A0S3QYP6|A0A0S3QYP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0392200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77071736..77075350) extracted from Lotus japonicus Gifu genome v1.2.
TTCAGTTTTGGGTTTAACAAGTTTGCATCACAAAAGTTTTAGAATTCACTGAAAATTTTGCAGGTTGCCCAGTTGTGTTG CTTCACAAATTTGTTATCTTTTTTCTTTTTCCTTATTCATTGTTCTAGTTTAGTTCCAATTCCTGTTGTGTATGATTTTG ACATGGGTTTCGCAATTGCAGCTTGATACTTGGACAATTTTGGTTGTGATTTTGTGCTTTATTGGGTTGATTCTGAAAGA AACTGTAATGGGGGGTAAGAGTTCAAAAGGGTCTGGTAGGAGGCATGTTTCATCATATGACTCTGCTGGTTCTTCATCTT CATGGGAAAACTATGGAATTCCGCAGCAACCATACGGATACCCATCACAAAATTCACATCAATCAACGCCTCTTCACCAC CGTGCACCGGCCGCAGCGGCGACCGCTCCGTTTCAGGACTATGCACAGCCAAAAAGGAGGTTAGATAGGAGATATTCAAG GATAGCTGATGATTACCATTCACTGGATGAGGTAAGATCAATACAAAAACTGTGTTGTTGTGATCTGCTTGTATGTAATT GTATTTCTTCGCTATGTTCTGTTAGCATCATTGACTTGTGTTTGGGAGAAAGAAAGGGAAAGGCCACAGGGACCTTAGGG ACATTGACTTGACCATTACTAAGTCAACCTTCATGGCGTTTTCAGATTCTGTACGCGTGTTTGGATCATTGTTTTCAGAA TTGATTTTGGTAAAGTTGATTGATTGTGGTAAAAGTTAGTTGAAAGTAATAAGAACTAAGAACCTTGCATTGGAGATGCT CTAAGACATGGAACCAAACACACATGTAGTTAGAAAGGAAATCAGCTTCTTAAAACTAACCGGGCGAAAGGAGATTGTAT GAGTTGTGTTCTTTATGAATTCTGTACTGAAGTGCTAGGTTTTAATTTTCAGCTAATAATCTATAAGCTGCTTCACCCAA CAATTACCCTTGCTGTTTCAGCACATATAAAATATCTCGTCAAATAATGGAATAAATGCATACAGGTTACTGCTGCTCTT TCACATGCTGGCCTGGAATCTTCTAATCTCATTGTGGGCATTGATTTCACAAAGAGCAACGAATGGACAGGTTTTAATCA CTTACATCTTGATGGTTGAGTTTCTTATACTGAGTTTTAGTACTATATAACATTTTCACTTTGAAAATCAGGGAAGATGT CCTTCAATCGAAAAAGTTTACATCACATTGGAAGTGGGCCTAATCCTTATGAACAAGCAATCACAATTATTGGGAAAACT TTAAGTGTTTTTGACGAGGATAACTTGATTCCTTGTTTTGGATTTGGAGATGGTAACGCCAGACATAAATCTTCACACTT TTCCCTTTCCAATTGTTTATATTTCCAAATTGCAAACTTGATTGTGTTTCTTACTTATGATTTCCCCCTGTCAGCATCAA CACATGATCAAGATGTCTTCAGCTTCCATTCAGATGAGAGTTTTTGCAATGGATTTGAGGAAGTTTTGTCAAAATATAGA GAGATTGTTCCTCGTCTTCGACTAGCAGGTGTTGCCTTAGTCTTAGATACTAGTAGCATTTTTTAATTAGGCTCAGCATG ACTCATGCATTCATGTGACAGGACCTACCTCATTTGCCCCTATGGTTGAGATGGCCATGACTATTGTTGAGCAAAGTGGT GGCCAATATCATGTCTTGCTAATAATCGCTGATGGACAGGTATATTTAATATAATACATATTTCATTTCATGGATAATTA TTTATAAACTTACACCAGTCATCAAAGTTCCATTGAGAGTTATCATCATGCTAGTTTTGTGTATGGCTTTTTTTTATCCG AGGAAGAAACTACAATGTTGTTATTGAATCATGACAGCAAAAATTTATACTTGAAATCTGCAACAGGTTACTAGAAGCGT TGACACGCAGCGCGGCCAGCTAAGTCCACAGGAACAGAGAACAATTGATGCAATTGTAAAAGCCAGGTAAGCTTAGCAGT TTTGTCTGTTCTGTGATGCTGTTCTGCAGTCTTATACCCTAATTGGATCGCAGCGAGTATCCACTGTCGATAGTTTTGGT GGGAGTTGGAGATGGACCATGGGATATGATGAGGGAGTTTGATGATAACATTCCAGCTCGAGCCTTTGACAATTTTCAGG TTTGGTGATGAAACTCTCACTAGACCATATTGACTTGCCATGTATAGATCTTCCAATTATGCTGAAAATGTGAACTTGGC TTCTGTAGTTTGTGAATTTTACAGAGATAATGTCAAGCAATGTAGATTCAAGCAGAAAAGAGGCAGCATTTGCTCTAGCA GCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCATGGCATATTGGGGTAAAAATTGAATATCAATGTGGT CAAATATCAAATATGGTCTTACTTATAGCATATATTGGGGTATTTAATTGATATATATCAAATAGTGCGCGGAGGGGACA TTCACCGGACCGTGTTCCTCTACCTCCACCTCGTTATGATAGAGCTTCCTCTAGCAGCGCCGCAACATCTTTCCGTTCAA ACAGTTTTCAGCAGAGTGCTCATACATATACTGGTTACAACAATGAAGTTAGCACAGAACCATCTTCAGGTGGCTTATAT GACAACAAGGTATTAAGATTTAAGACACCATTCTTTCCAACTTAGTATGCCACATATCACATTCTTCTGAGTCATAGTTT AGTTTTCCTCCCTTGAGTCCTAATGTTCATCAAGGTTTATTCATGATCATTTTTTGTGTCACACTCTCAGTCATAGTTTA TATATGAAGTGGTTAAATGCAGGTTTGCCCTATTTGTCTTACTAATGGGAAGGATATGGCTTTTGGTTGCGGGCATCAGG TAAGAAATTAAATTATGTTTCTGATTCATCTTAAATCTAAGGCTGTATGAAAAGAACATAACATTAACTTGAGAAAAAAG TACATGCACTGATGGTCAACAAATCAGATTTCAAAGATGTTAAAAAATCTTTACATTGTCAGTGCATCAAAATTAAACTT TATTAACTTTCCTTGCCGTTGTTGTTATTTCCTTACATGGGACAGACTTGTTGTGATTGTGGAGAAAGCCTCGAATCCTG CCCTATTTGCCGAAGTGCTATCACCACCAAAATAAGGCTTTTCTAGTTGCACTTTGCTTCAAACCAGCTTTCAATGACAT TGCATGCATTGCCAGGACAAGGTTAGTCTCATAATTTTGATGAGATCAAAAAACAATATGTTCTCAATTGATTCAATTAG TCATTGATTAGCATGATTCATAATAGCAGATGAGCAAGGTTGTCCTGGATCTTTGATGGAGGGGCTTCTTTCCTTGATCT TGTACAAAAACTGCATTTCACAATTTTGAACCAAAACAAATATGCCAGGATAGGAAGACTTGTTTATAGAGTGAATTGGT TTTGTCTCATTGTATGTATGTAGTTTGACCACACTTAGTTGGATAAGACTTTTGTTGTTGTTGTAGTTGTTTTTGTTGTA TATATGAAGTTTGGGCAGCATCAGCATGAAGGCTTCATGTTTTGAAGTACTACTTGTAAAATAAATAATAACATTGTTGT GAAGTATACTATTTG
CDS sequence (LotjaGi4g1v0392200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGGTAAGAGTTCAAAAGGGTCTGGTAGGAGGCATGTTTCATCATATGACTCTGCTGGTTCTTCATCTTCATGGGA AAACTATGGAATTCCGCAGCAACCATACGGATACCCATCACAAAATTCACATCAATCAACGCCTCTTCACCACCGTGCAC CGGCCGCAGCGGCGACCGCTCCGTTTCAGGACTATGCACAGCCAAAAAGGAGGTTAGATAGGAGATATTCAAGGATAGCT GATGATTACCATTCACTGGATGAGGTTACTGCTGCTCTTTCACATGCTGGCCTGGAATCTTCTAATCTCATTGTGGGCAT TGATTTCACAAAGAGCAACGAATGGACAGGGAAGATGTCCTTCAATCGAAAAAGTTTACATCACATTGGAAGTGGGCCTA ATCCTTATGAACAAGCAATCACAATTATTGGGAAAACTTTAAGTGTTTTTGACGAGGATAACTTGATTCCTTGTTTTGGA TTTGGAGATGCATCAACACATGATCAAGATGTCTTCAGCTTCCATTCAGATGAGAGTTTTTGCAATGGATTTGAGGAAGT TTTGTCAAAATATAGAGAGATTGTTCCTCGTCTTCGACTAGCAGGACCTACCTCATTTGCCCCTATGGTTGAGATGGCCA TGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATCGCTGATGGACAGGTTACTAGAAGCGTTGAC ACGCAGCGCGGCCAGCTAAGTCCACAGGAACAGAGAACAATTGATGCAATTGTAAAAGCCAGCGAGTATCCACTGTCGAT AGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAGTTTGATGATAACATTCCAGCTCGAGCCTTTGACA ATTTTCAGTTTGTGAATTTTACAGAGATAATGTCAAGCAATGTAGATTCAAGCAGAAAAGAGGCAGCATTTGCTCTAGCA GCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCATGGCATATTGGGTGCGCGGAGGGGACATTCACCGGA CCGTGTTCCTCTACCTCCACCTCGTTATGATAGAGCTTCCTCTAGCAGCGCCGCAACATCTTTCCGTTCAAACAGTTTTC AGCAGAGTGCTCATACATATACTGGTTACAACAATGAAGTTAGCACAGAACCATCTTCAGGTGGCTTATATGACAACAAG GTTTGCCCTATTTGTCTTACTAATGGGAAGGATATGGCTTTTGGTTGCGGGCATCAGACTTGTTGTGATTGTGGAGAAAG CCTCGAATCCTGCCCTATTTGCCGAAGTGCTATCACCACCAAAATAAGGCTTTTCTAG
Protein sequence (LotjaGi4g1v0392200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGKSSKGSGRRHVSSYDSAGSSSSWENYGIPQQPYGYPSQNSHQSTPLHHRAPAAAATAPFQDYAQPKRRLDRRYSRIA DDYHSLDEVTAALSHAGLESSNLIVGIDFTKSNEWTGKMSFNRKSLHHIGSGPNPYEQAITIIGKTLSVFDEDNLIPCFG FGDASTHDQDVFSFHSDESFCNGFEEVLSKYREIVPRLRLAGPTSFAPMVEMAMTIVEQSGGQYHVLLIIADGQVTRSVD TQRGQLSPQEQRTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSSNVDSSRKEAAFALA ALMEIPSQYKATIDHGILGARRGHSPDRVPLPPPRYDRASSSSAATSFRSNSFQQSAHTYTGYNNEVSTEPSSGGLYDNK VCPICLTNGKDMAFGCGHQTCCDCGESLESCPICRSAITTKIRLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 49 | 49 | - | – | |
PANTHER | 1 | 445 | 445 | 3.4E-262 | – | |
PANTHER | 1 | 445 | 445 | 3.4E-262 | – | |
MobiDBLite | 1 | 64 | 64 | - | – | |
SMART | 100 | 303 | 204 | 1.4E-7 | ||
SUPERFAMILY | 101 | 284 | 184 | 1.73E-11 | ||
Pfam | 125 | 338 | 214 | 2.4E-75 | ||
MobiDBLite | 340 | 371 | 32 | - | – | |
Gene3D | 376 | 445 | 70 | 1.9E-12 | ||
SUPERFAMILY | 396 | 441 | 46 | 1.53E-6 | – | |
Pfam | 399 | 439 | 41 | 4.6E-8 | – | |
CDD | 401 | 445 | 45 | 1.53365E-24 | – | |
ProSiteProfiles | 402 | 435 | 34 | 10.837 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0392200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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