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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0392200 |
| Transcript ID | LotjaGi4g1v0392200.1 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase RGLG2-like protein; TAIR: AT1G67800.2 Copine (Calcium-dependent phospholipid-binding protein) family; Swiss-Prot: sp|Q8LB88|RGLG5_ARATH E3 ubiquitin-protein ligase RGLG5; TrEMBL-Plants: tr|A0A072TV45|A0A072TV45_MEDTR E3 ubiquitin-protein ligase RGLG2-like protein; Found in the gene: LotjaGi4g1v0392200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77070749..77075798) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAATAAAGTACAAACAAAAGAAGATTTCTTGTCTCAGCTTGCAAATCTAATTGCTAAGCATTAGCAACTACACAACC ACCTTACTTGTTCAATGCCCATATCATATGAACAACCCAAAACATTCTCAACCTTATCTCGTACTTTAATATATCTTTGT TTGAACATGGAAGGAGATGGTTATATAAATAGATATTATTGTCATTGACTTGACTATATTCTGGTTTTCTTCTTCGAACT TTCTTAGTTTATTGTCTTCTTCCTTTTCATTTACTTCTACAAGTTCAAGGTAGTTTCTCTACTTGATTAATTTAGCGTGC AACTATAATAAATCCAGCGAGTTGTTCATTCTGTCACAATTCTTGTGAAAACAATGCATCTAGAGGTATGTGGAAAAATA TATAGTTACTTTTCTTGGTCTTCTCTTTCATATTACTCACTATATTAGTTCAGTTTTGGGTTTAACAAGTTTGCATCACA AAAGTTTTAGAATTCACTGAAAATTTTGCAGGTTGCCCAGTTGTGTTGCTTCACAAATTTGTTATCTTTTTTCTTTTTCC TTATTCATTGTTCTAGTTTAGTTCCAATTCCTGTTGTGTATGATTTTGACATGGGTTTCGCAATTGCAGCTTGATACTTG GACAATTTTGGTTGTGATTTTGTGCTTTATTGGGTTGATTCTGAAAGAAACTGTAATGGGGGGTAAGAGTTCAAAAGGGT CTGGTAGGAGGCATGTTTCATCATATGACTCTGCTGGTTCTTCATCTTCATGGGAAAACTATGGAATTCCGCAGCAACCA TACGGATACCCATCACAAAATTCACATCAATCAACGCCTCTTCACCACCGTGCACCGGCCGCAGCGGCGACCGCTCCGTT TCAGGACTATGCACAGCCAAAAAGGAGGTTAGATAGGAGATATTCAAGGATAGCTGATGATTACCATTCACTGGATGAGG TAAGATCAATACAAAAACTGTGTTGTTGTGATCTGCTTGTATGTAATTGTATTTCTTCGCTATGTTCTGTTAGCATCATT GACTTGTGTTTGGGAGAAAGAAAGGGAAAGGCCACAGGGACCTTAGGGACATTGACTTGACCATTACTAAGTCAACCTTC ATGGCGTTTTCAGATTCTGTACGCGTGTTTGGATCATTGTTTTCAGAATTGATTTTGGTAAAGTTGATTGATTGTGGTAA AAGTTAGTTGAAAGTAATAAGAACTAAGAACCTTGCATTGGAGATGCTCTAAGACATGGAACCAAACACACATGTAGTTA GAAAGGAAATCAGCTTCTTAAAACTAACCGGGCGAAAGGAGATTGTATGAGTTGTGTTCTTTATGAATTCTGTACTGAAG TGCTAGGTTTTAATTTTCAGCTAATAATCTATAAGCTGCTTCACCCAACAATTACCCTTGCTGTTTCAGCACATATAAAA TATCTCGTCAAATAATGGAATAAATGCATACAGGTTACTGCTGCTCTTTCACATGCTGGCCTGGAATCTTCTAATCTCAT TGTGGGCATTGATTTCACAAAGAGCAACGAATGGACAGGTTTTAATCACTTACATCTTGATGGTTGAGTTTCTTATACTG AGTTTTAGTACTATATAACATTTTCACTTTGAAAATCAGGGAAGATGTCCTTCAATCGAAAAAGTTTACATCACATTGGA AGTGGGCCTAATCCTTATGAACAAGCAATCACAATTATTGGGAAAACTTTAAGTGTTTTTGACGAGGATAACTTGATTCC TTGTTTTGGATTTGGAGATGGTAACGCCAGACATAAATCTTCACACTTTTCCCTTTCCAATTGTTTATATTTCCAAATTG CAAACTTGATTGTGTTTCTTACTTATGATTTCCCCCTGTCAGCATCAACACATGATCAAGATGTCTTCAGCTTCCATTCA GATGAGAGTTTTTGCAATGGATTTGAGGAAGTTTTGTCAAAATATAGAGAGATTGTTCCTCGTCTTCGACTAGCAGGTGT TGCCTTAGTCTTAGATACTAGTAGCATTTTTTAATTAGGCTCAGCATGACTCATGCATTCATGTGACAGGACCTACCTCA TTTGCCCCTATGGTTGAGATGGCCATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATCGCTGA TGGACAGGTATATTTAATATAATACATATTTCATTTCATGGATAATTATTTATAAACTTACACCAGTCATCAAAGTTCCA TTGAGAGTTATCATCATGCTAGTTTTGTGTATGGCTTTTTTTTATCCGAGGAAGAAACTACAATGTTGTTATTGAATCAT GACAGCAAAAATTTATACTTGAAATCTGCAACAGGTTACTAGAAGCGTTGACACGCAGCGCGGCCAGCTAAGTCCACAGG AACAGAGAACAATTGATGCAATTGTAAAAGCCAGGTAAGCTTAGCAGTTTTGTCTGTTCTGTGATGCTGTTCTGCAGTCT TATACCCTAATTGGATCGCAGCGAGTATCCACTGTCGATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGA GGGAGTTTGATGATAACATTCCAGCTCGAGCCTTTGACAATTTTCAGGTTTGGTGATGAAACTCTCACTAGACCATATTG ACTTGCCATGTATAGATCTTCCAATTATGCTGAAAATGTGAACTTGGCTTCTGTAGTTTGTGAATTTTACAGAGATAATG TCAAGCAATGTAGATTCAAGCAGAAAAGAGGCAGCATTTGCTCTAGCAGCTTTGATGGAGATACCTTCTCAATATAAGGC AACCATAGATCATGGCATATTGGGGTAAAAATTGAATATCAATGTGGTCAAATATCAAATATGGTCTTACTTATAGCATA TATTGGGGTATTTAATTGATATATATCAAATAGTGCGCGGAGGGGACATTCACCGGACCGTGTTCCTCTACCTCCACCTC GTTATGATAGAGCTTCCTCTAGCAGCGCCGCAACATCTTTCCGTTCAAACAGTTTTCAGCAGAGTGCTCATACATATACT GGTTACAACAATGAAGTTAGCACAGAACCATCTTCAGGTGGCTTATATGACAACAAGGTATTAAGATTTAAGACACCATT CTTTCCAACTTAGTATGCCACATATCACATTCTTCTGAGTCATAGTTTAGTTTTCCTCCCTTGAGTCCTAATGTTCATCA AGGTTTATTCATGATCATTTTTTGTGTCACACTCTCAGTCATAGTTTATATATGAAGTGGTTAAATGCAGGTTTGCCCTA TTTGTCTTACTAATGGGAAGGATATGGCTTTTGGTTGCGGGCATCAGGTAAGAAATTAAATTATGTTTCTGATTCATCTT AAATCTAAGGCTGTATGAAAAGAACATAACATTAACTTGAGAAAAAAGTACATGCACTGATGGTCAACAAATCAGATTTC AAAGATGTTAAAAAATCTTTACATTGTCAGTGCATCAAAATTAAACTTTATTAACTTTCCTTGCCGTTGTTGTTATTTCC TTACATGGGACAGACTTGTTGTGATTGTGGAGAAAGCCTCGAATCCTGCCCTATTTGCCGAAGTGCTATCACCACCAAAA TAAGGCTTTTCTAGTTGCACTTTGCTTCAAACCAGCTTTCAATGACATTGCATGCATTGCCAGGACAAGGTTAGTCTCAT AATTTTGATGAGATCAAAAAACAATATGTTCTCAATTGATTCAATTAGTCATTGATTAGCATGATTCATAATAGCAGATG AGCAAGGTTGTCCTGGATCTTTGATGGAGGGGCTTCTTTCCTTGATCTTGTACAAAAACTGCATTTCACAATTTTGAACC AAAACAAATATGCCAGGATAGGAAGACTTGTTTATAGAGTGAATTGGTTTTGTCTCATTGTATGTATGTAGTTTGACCAC ACTTAGTTGGATAAGACTTTTGTTGTTGTTGTAGTTGTTTTTGTTGTATATATGAAGTTTGGGCAGCATCAGCATGAAGG CTTCATGTTTTGAAGTACTACTTGTAAAATAAATAATAACATTGTTGTGAAGTATACTATTTGTTAAAGTTTTCTTATAA TTTCTATTTTCTACATTTGAGCATCAGAATTCAGAAACTGTATCTGCTTAGTTTGATTAGACTTTATATGGTTAGTTGTA TTTGTGTACCATTAGATTTTACTATATTGTTAGTTGGTATCAGTCAGCACTTTCCTTCTTGGCAATAAATTAAGTTAAAA ATTTCTAACACATGCTCACGAAAAATTCCAAGGACAGAGCTTGGTTAGTCGGACACCTTACTCAGCTTCTTGGAATTTTT CATGAACATTGCAGCCAATGCTCATGAAAAAATCTAGAGGGTAGTGCATGTCTGACTAACAGCATCATCTGGAATTTTTC ATGCCAACAATAAAATTAAGTTAAAAGTTTCTAACACTATTCATGAAACATTCCAGGGATAGAGTTTGGTTAGTGGGAGA CCTTACTCTGTCTTCTTGAAATAGTTCAATCTTGGAAATTTTTGGTGAACAAACACCAACAATAAAATTAGGTTAAGAAA GAAAGAAGCAAATGCAGGGATAGCTCTATAGGAGGAAAACAGCAAAAACTAGCACTTTTAGTAGAAGCAAGAGCCATATG TACCTAAAACCAATAGCCACGTATTTTGCTGTTGCCTTGAATTGCAAGTGTTGCAGTGTTCACCGCAATTGAAGTTGCTG ATATATCTTTGGAGTGTAGGATACAAATTAAGTTGCCATTTTCTGAAACAATTGGCTAAAGTTTGCGTTTAATTTCAAGT GTTGATAAACTTCAAACAACCACGTACATGTTGTGTTGGCATTTTCTATGTATGATGCATTTATGATGCTGATGCAATAC TACACGTATCGATTTCTCTCACTCTCAATCAACTTAGCCAAACTTCAACGGAAAAACATGATGATAGACCGGTTTATTTT ACAAGTTAATTTCTGCTTTTCTTCAAGGGACATTGTTCCTTTTGTTTAAGGAAAAATTAAGTAATTAACTGAAATAGCTA GATTCTCTCA
CDS sequence (LotjaGi4g1v0392200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTTGACATGGGTTTCGCAATTGCAGCTTGATACTTGGACAATTTTGGTTGTGATTTTGTGCTTTATTGGGTTGAT TCTGAAAGAAACTGTAATGGGGGGTAAGAGTTCAAAAGGGTCTGGTAGGAGGCATGTTTCATCATATGACTCTGCTGGTT CTTCATCTTCATGGGAAAACTATGGAATTCCGCAGCAACCATACGGATACCCATCACAAAATTCACATCAATCAACGCCT CTTCACCACCGTGCACCGGCCGCAGCGGCGACCGCTCCGTTTCAGGACTATGCACAGCCAAAAAGGAGGTTAGATAGGAG ATATTCAAGGATAGCTGATGATTACCATTCACTGGATGAGGTTACTGCTGCTCTTTCACATGCTGGCCTGGAATCTTCTA ATCTCATTGTGGGCATTGATTTCACAAAGAGCAACGAATGGACAGGGAAGATGTCCTTCAATCGAAAAAGTTTACATCAC ATTGGAAGTGGGCCTAATCCTTATGAACAAGCAATCACAATTATTGGGAAAACTTTAAGTGTTTTTGACGAGGATAACTT GATTCCTTGTTTTGGATTTGGAGATGCATCAACACATGATCAAGATGTCTTCAGCTTCCATTCAGATGAGAGTTTTTGCA ATGGATTTGAGGAAGTTTTGTCAAAATATAGAGAGATTGTTCCTCGTCTTCGACTAGCAGGACCTACCTCATTTGCCCCT ATGGTTGAGATGGCCATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATCGCTGATGGACAGGT TACTAGAAGCGTTGACACGCAGCGCGGCCAGCTAAGTCCACAGGAACAGAGAACAATTGATGCAATTGTAAAAGCCAGCG AGTATCCACTGTCGATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAGTTTGATGATAACATTCCA GCTCGAGCCTTTGACAATTTTCAGTTTGTGAATTTTACAGAGATAATGTCAAGCAATGTAGATTCAAGCAGAAAAGAGGC AGCATTTGCTCTAGCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCATGGCATATTGGGTGCGCGGA GGGGACATTCACCGGACCGTGTTCCTCTACCTCCACCTCGTTATGATAGAGCTTCCTCTAGCAGCGCCGCAACATCTTTC CGTTCAAACAGTTTTCAGCAGAGTGCTCATACATATACTGGTTACAACAATGAAGTTAGCACAGAACCATCTTCAGGTGG CTTATATGACAACAAGGTTTGCCCTATTTGTCTTACTAATGGGAAGGATATGGCTTTTGGTTGCGGGCATCAGACTTGTT GTGATTGTGGAGAAAGCCTCGAATCCTGCCCTATTTGCCGAAGTGCTATCACCACCAAAATAAGGCTTTTCTAG
Protein sequence (LotjaGi4g1v0392200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILTWVSQLQLDTWTILVVILCFIGLILKETVMGGKSSKGSGRRHVSSYDSAGSSSSWENYGIPQQPYGYPSQNSHQSTP LHHRAPAAAATAPFQDYAQPKRRLDRRYSRIADDYHSLDEVTAALSHAGLESSNLIVGIDFTKSNEWTGKMSFNRKSLHH IGSGPNPYEQAITIIGKTLSVFDEDNLIPCFGFGDASTHDQDVFSFHSDESFCNGFEEVLSKYREIVPRLRLAGPTSFAP MVEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQRGQLSPQEQRTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIP ARAFDNFQFVNFTEIMSSNVDSSRKEAAFALAALMEIPSQYKATIDHGILGARRGHSPDRVPLPPPRYDRASSSSAATSF RSNSFQQSAHTYTGYNNEVSTEPSSGGLYDNKVCPICLTNGKDMAFGCGHQTCCDCGESLESCPICRSAITTKIRLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 8 | 477 | 470 | 8.7E-274 | – | |
| PANTHER | 8 | 477 | 470 | 8.7E-274 | – | |
| Phobius | 12 | 28 | 17 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 29 | 477 | 449 | - | – | |
| MobiDBLite | 35 | 58 | 24 | - | – | |
| MobiDBLite | 41 | 58 | 18 | - | – | |
| MobiDBLite | 66 | 81 | 16 | - | – | |
| MobiDBLite | 66 | 85 | 20 | - | – | |
| SMART | 132 | 335 | 204 | 1.4E-7 | ||
| SUPERFAMILY | 133 | 316 | 184 | 2.05E-11 | ||
| Pfam | 157 | 370 | 214 | 2.9E-75 | ||
| MobiDBLite | 372 | 403 | 32 | - | – | |
| Gene3D | 408 | 477 | 70 | 2.1E-12 | ||
| SUPERFAMILY | 428 | 473 | 46 | 1.71E-6 | – | |
| Pfam | 431 | 471 | 41 | 5.1E-8 | – | |
| CDD | 433 | 477 | 45 | 2.16405E-24 | – | |
| ProSiteProfiles | 434 | 467 | 34 | 10.837 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0392200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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