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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0392200 |
| Transcript ID | LotjaGi4g1v0392200.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase RGLG2-like protein; TAIR: AT1G67800.2 Copine (Calcium-dependent phospholipid-binding protein) family; Swiss-Prot: sp|Q8LB88|RGLG5_ARATH E3 ubiquitin-protein ligase RGLG5; TrEMBL-Plants: tr|A0A072TV45|A0A072TV45_MEDTR E3 ubiquitin-protein ligase RGLG2-like protein; Found in the gene: LotjaGi4g1v0392200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77071578..77075772) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCTTGTCTCAGCTTGCAAATCTAATTGCTAAGCATTAGCAACTACACAACCACCTTACTTGTTCAATGCCCATATCA TATGAACAACCCAAAACATTCTCAACCTTATCTCGTACTTTAATATATCTTTGTTTGAACATGGAAGGAGATGGTTATAT AAATAGATATTATTGTCATTGACTTGACTATATTCTGGTTTTCTTCTTCGAACTTTCTTAGTTTATTGTCTTCTTCCTTT TCATTTACTTCTACAAGTTCAAGGTAGTTTCTCTACTTGATTAATTTAGCGTGCAACTATAATAAATCCAGCGAGTTGTT CATTCTGTCACAATTCTTGTGAAAACAATGCATCTAGAGGTATGTGGAAAAATATATAGTTACTTTTCTTGGTCTTCTCT TTCATATTACTCACTATATTAGTTCAGTTTTGGGTTTAACAAGTTTGCATCACAAAAGTTTTAGAATTCACTGAAAATTT TGCAGGTTGCCCAGTTGTGTTGCTTCACAAATTTGTTATCTTTTTTCTTTTTCCTTATTCATTGTTCTAGTTTAGTTCCA ATTCCTGTTGTGTATGATTTTGACATGGGTTTCGCAATTGCAGCTTGATACTTGGACAATTTTGGTTGTGATTTTGTGCT TTATTGGGTTGATTCTGAAAGAAACTGTAATGGGGGGTAAGAGTTCAAAAGGGTCTGGTAGGAGGCATGTTTCATCATAT GACTCTGCTGGTTCTTCATCTTCATGGGAAAACTATGGAATTCCGCAGCAACCATACGGATACCCATCACAAAATTCACA TCAATCAACGCCTCTTCACCACCGTGCACCGGCCGCAGCGGCGACCGCTCCGTTTCAGGACTATGCACAGCCAAAAAGGA GGTTAGATAGGAGATATTCAAGGATAGCTGATGATTACCATTCACTGGATGAGGTAAGATCAATACAAAAACTGTGTTGT TGTGATCTGCTTGTATGTAATTGTATTTCTTCGCTATGTTCTGTTAGCATCATTGACTTGTGTTTGGGAGAAAGAAAGGG AAAGGCCACAGGGACCTTAGGGACATTGACTTGACCATTACTAAGTCAACCTTCATGGCGTTTTCAGATTCTGTACGCGT GTTTGGATCATTGTTTTCAGAATTGATTTTGGTAAAGTTGATTGATTGTGGTAAAAGTTAGTTGAAAGTAATAAGAACTA AGAACCTTGCATTGGAGATGCTCTAAGACATGGAACCAAACACACATGTAGTTAGAAAGGAAATCAGCTTCTTAAAACTA ACCGGGCGAAAGGAGATTGTATGAGTTGTGTTCTTTATGAATTCTGTACTGAAGTGCTAGGTTTTAATTTTCAGCTAATA ATCTATAAGCTGCTTCACCCAACAATTACCCTTGCTGTTTCAGCACATATAAAATATCTCGTCAAATAATGGAATAAATG CATACAGGTTACTGCTGCTCTTTCACATGCTGGCCTGGAATCTTCTAATCTCATTGTGGGCATTGATTTCACAAAGAGCA ACGAATGGACAGGTTTTAATCACTTACATCTTGATGGTTGAGTTTCTTATACTGAGTTTTAGTACTATATAACATTTTCA CTTTGAAAATCAGGGAAGATGTCCTTCAATCGAAAAAGTTTACATCACATTGGAAGTGGGCCTAATCCTTATGAACAAGC AATCACAATTATTGGGAAAACTTTAAGTGTTTTTGACGAGGATAACTTGATTCCTTGTTTTGGATTTGGAGATGGTAACG CCAGACATAAATCTTCACACTTTTCCCTTTCCAATTGTTTATATTTCCAAATTGCAAACTTGATTGTGTTTCTTACTTAT GATTTCCCCCTGTCAGCATCAACACATGATCAAGATGTCTTCAGCTTCCATTCAGATGAGAGTTTTTGCAATGGATTTGA GGAAGTTTTGTCAAAATATAGAGAGATTGTTCCTCGTCTTCGACTAGCAGGTGTTGCCTTAGTCTTAGATACTAGTAGCA TTTTTTAATTAGGCTCAGCATGACTCATGCATTCATGTGACAGGACCTACCTCATTTGCCCCTATGGTTGAGATGGCCAT GACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATCGCTGATGGACAGGTATATTTAATATAATACA TATTTCATTTCATGGATAATTATTTATAAACTTACACCAGTCATCAAAGTTCCATTGAGAGTTATCATCATGCTAGTTTT GTGTATGGCTTTTTTTTATCCGAGGAAGAAACTACAATGTTGTTATTGAATCATGACAGCAAAAATTTATACTTGAAATC TGCAACAGGTTACTAGAAGCGTTGACACGCAGCGCGGCCAGCTAAGTCCACAGGAACAGAGAACAATTGATGCAATTGTA AAAGCCAGGTAAGCTTAGCAGTTTTGTCTGTTCTGTGATGCTGTTCTGCAGTCTTATACCCTAATTGGATCGCAGCGAGT ATCCACTGTCGATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAGTTTGATGATAACATTCCAGCT CGAGCCTTTGACAATTTTCAGGTTTGGTGATGAAACTCTCACTAGACCATATTGACTTGCCATGTATAGATCTTCCAATT ATGCTGAAAATGTGAACTTGGCTTCTGTAGTTTGTGAATTTTACAGAGATAATGTCAAGCAATGTAGATTCAAGCAGAAA AGAGGCAGCATTTGCTCTAGCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCATGGCATATTGGGGT AAAAATTGAATATCAATGTGGTCAAATATCAAATATGGTCTTACTTATAGCATATATTGGGGTATTTAATTGATATATAT CAAATAGTGCGCGGAGGGGACATTCACCGGACCGTGTTCCTCTACCTCCACCTCGTTATGATAGAGCTTCCTCTAGCAGC GCCGCAACATCTTTCCGTTCAAACAGTTTTCAGCAGAGTGCTCATACATATACTGGTTACAACAATGAAGTTAGCACAGA ACCATCTTCAGGTGGCTTATATGACAACAAGGTATTAAGATTTAAGACACCATTCTTTCCAACTTAGTATGCCACATATC ACATTCTTCTGAGTCATAGTTTAGTTTTCCTCCCTTGAGTCCTAATGTTCATCAAGGTTTATTCATGATCATTTTTTGTG TCACACTCTCAGTCATAGTTTATATATGAAGTGGTTAAATGCAGGTTTGCCCTATTTGTCTTACTAATGGGAAGGATATG GCTTTTGGTTGCGGGCATCAGGTAAGAAATTAAATTATGTTTCTGATTCATCTTAAATCTAAGGCTGTATGAAAAGAACA TAACATTAACTTGAGAAAAAAGTACATGCACTGATGGTCAACAAATCAGATTTCAAAGATGTTAAAAAATCTTTACATTG TCAGTGCATCAAAATTAAACTTTATTAACTTTCCTTGCCGTTGTTGTTATTTCCTTACATGGGACAGACTTGTTGTGATT GTGGAGAAAGCCTCGAATCCTGCCCTATTTGCCGAAGTGCTATCACCACCAAAATAAGGCTTTTCTAGTTGCACTTTGCT TCAAACCAGCTTTCAATGACATTGCATGCATTGCCAGGACAAGGTTAGTCTCATAATTTTGATGAGATCAAAAAACAATA TGTTCTCAATTGATTCAATTAGTCATTGATTAGCATGATTCATAATAGCAGATGAGCAAGGTTGTCCTGGATCTTTGATG GAGGGGCTTCTTTCCTTGATCTTGTACAAAAACTGCATTTCACAATTTTGAACCAAAACAAATATGCCAGGATAGGAAGA CTTGTTTATAGAGTGAATTGGTTTTGTCTCATTGTATGTATGTAGTTTGACCACACTTAGTTGGATAAGACTTTTGTTGT TGTTGTAGTTGTTTTTGTTGTATATATGAAGTTTGGGCAGCATCAGCATGAAGGCTTCATGTTTTGAAGTACTACTTGTA AAATAAATAATAACATTGTTGTGAAGTATACTATTTGTTAAAGTTTTCTTATAATTTCTATTTTCTACATTTGAGCATCA GAATTCAGAAACTGTATCTGCTTAGTTTGATTAGACTTTATATGGTTAGTTGTATTTGTGTACCATTAGATTTTACTATA TTGTTAGTTGGTATCAGTCAGCACTTTCCTTCTTG
CDS sequence (LotjaGi4g1v0392200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATCTAGAGCTTGATACTTGGACAATTTTGGTTGTGATTTTGTGCTTTATTGGGTTGATTCTGAAAGAAACTGTAAT GGGGGGTAAGAGTTCAAAAGGGTCTGGTAGGAGGCATGTTTCATCATATGACTCTGCTGGTTCTTCATCTTCATGGGAAA ACTATGGAATTCCGCAGCAACCATACGGATACCCATCACAAAATTCACATCAATCAACGCCTCTTCACCACCGTGCACCG GCCGCAGCGGCGACCGCTCCGTTTCAGGACTATGCACAGCCAAAAAGGAGGTTAGATAGGAGATATTCAAGGATAGCTGA TGATTACCATTCACTGGATGAGGTTACTGCTGCTCTTTCACATGCTGGCCTGGAATCTTCTAATCTCATTGTGGGCATTG ATTTCACAAAGAGCAACGAATGGACAGGGAAGATGTCCTTCAATCGAAAAAGTTTACATCACATTGGAAGTGGGCCTAAT CCTTATGAACAAGCAATCACAATTATTGGGAAAACTTTAAGTGTTTTTGACGAGGATAACTTGATTCCTTGTTTTGGATT TGGAGATGCATCAACACATGATCAAGATGTCTTCAGCTTCCATTCAGATGAGAGTTTTTGCAATGGATTTGAGGAAGTTT TGTCAAAATATAGAGAGATTGTTCCTCGTCTTCGACTAGCAGGACCTACCTCATTTGCCCCTATGGTTGAGATGGCCATG ACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATCGCTGATGGACAGGTTACTAGAAGCGTTGACAC GCAGCGCGGCCAGCTAAGTCCACAGGAACAGAGAACAATTGATGCAATTGTAAAAGCCAGCGAGTATCCACTGTCGATAG TTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAGTTTGATGATAACATTCCAGCTCGAGCCTTTGACAAT TTTCAGTTTGTGAATTTTACAGAGATAATGTCAAGCAATGTAGATTCAAGCAGAAAAGAGGCAGCATTTGCTCTAGCAGC TTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCATGGCATATTGGGTGCGCGGAGGGGACATTCACCGGACC GTGTTCCTCTACCTCCACCTCGTTATGATAGAGCTTCCTCTAGCAGCGCCGCAACATCTTTCCGTTCAAACAGTTTTCAG CAGAGTGCTCATACATATACTGGTTACAACAATGAAGTTAGCACAGAACCATCTTCAGGTGGCTTATATGACAACAAGGT TTGCCCTATTTGTCTTACTAATGGGAAGGATATGGCTTTTGGTTGCGGGCATCAGACTTGTTGTGATTGTGGAGAAAGCC TCGAATCCTGCCCTATTTGCCGAAGTGCTATCACCACCAAAATAAGGCTTTTCTAG
Protein sequence (LotjaGi4g1v0392200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHLELDTWTILVVILCFIGLILKETVMGGKSSKGSGRRHVSSYDSAGSSSSWENYGIPQQPYGYPSQNSHQSTPLHHRAP AAAATAPFQDYAQPKRRLDRRYSRIADDYHSLDEVTAALSHAGLESSNLIVGIDFTKSNEWTGKMSFNRKSLHHIGSGPN PYEQAITIIGKTLSVFDEDNLIPCFGFGDASTHDQDVFSFHSDESFCNGFEEVLSKYREIVPRLRLAGPTSFAPMVEMAM TIVEQSGGQYHVLLIIADGQVTRSVDTQRGQLSPQEQRTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDN FQFVNFTEIMSSNVDSSRKEAAFALAALMEIPSQYKATIDHGILGARRGHSPDRVPLPPPRYDRASSSSAATSFRSNSFQ QSAHTYTGYNNEVSTEPSSGGLYDNKVCPICLTNGKDMAFGCGHQTCCDCGESLESCPICRSAITTKIRLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 471 | 471 | 1.6E-275 | – | |
| PANTHER | 1 | 471 | 471 | 1.6E-275 | – | |
| Phobius | 6 | 22 | 17 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 23 | 471 | 449 | - | – | |
| MobiDBLite | 29 | 79 | 51 | - | – | |
| MobiDBLite | 35 | 75 | 41 | - | – | |
| SMART | 126 | 329 | 204 | 1.4E-7 | ||
| SUPERFAMILY | 127 | 310 | 184 | 1.96E-11 | ||
| Pfam | 151 | 364 | 214 | 2.8E-75 | ||
| MobiDBLite | 366 | 397 | 32 | - | – | |
| Gene3D | 402 | 471 | 70 | 2.0E-12 | ||
| SUPERFAMILY | 422 | 467 | 46 | 1.68E-6 | – | |
| Pfam | 425 | 465 | 41 | 5.0E-8 | – | |
| CDD | 427 | 471 | 45 | 2.24262E-24 | – | |
| ProSiteProfiles | 428 | 461 | 34 | 10.837 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0392200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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