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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0073600 |
Transcript ID | LotjaGi5g1v0073600.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|K7LHH2|K7LHH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12218106..12225742) extracted from Lotus japonicus Gifu genome v1.2.
TTTCCCGTACACAGCACATTACTTCCTCGTTTCTCTCTTATTTCTCTCTCTCTCTCCTCTTTCTCTCGCGCTCGTTCTAT CTTGTGTTCTCTCGTCCTTTATCCTTCTCTCTCTCTCTCTCACACATTTCTTCTTCTTCTTCTTCCTCGATCTCACCGTA AGTCCATTTCTCTAAACCCTAATCCTCATTTCTCGATTCCACTCCTCTCTTCACTGTTCTTCACCCTCTCGCTTCTTCTT CTCCTTCTCTTAGGGTTAGCATTTTCGATTTCTGTGCTACATTTTCAACAAACTGCTCCTGTTTGCTCCAAATTGACAAC AATGTGATCAATTTTTCACGCTTTTCGTCATTTTCCGCTTACTTCACTGTGTTTTTCAGCGTTTTCCGAGTTCTGTAGCG AAACGGAACAACGAACATGCATTTCTCATTTCTTCCTAGGGTTTTTCTTCGTTTACTGTTTATACCGATGGTTGAAGCTA AATTAGTTGAAATTTCTTGAAAATGTTAGGTTCTTGTTACTTTCGTTTACCTATTTGAACTGAACGGAAGATGCATGTAA AAAAATTCAAGAAAAAGACACTAGTGATTGTTTTGTGTTAGTGGGGAAATGTTCACGCGTTGCATTTACTACTGCATTTA ATTCGAAATGGTGCATTTTGAGTGTGTTGGTCAGTTTGTGGTTTTGTTCTTGAATCTTGACAACGCAGCAGAATCTAGTG GAGTTTTTAGCACGTGATTTTGAAGCATGCTAATATTTTATTAATGGAGACTAATTTAATCTAATTTAAACAAATGGAGA TTGTTTCAGATGATTGCCAGTAGCTTTTTAATATTTCATTGTTTAGCAATTTTGGTAAATATTGACCACTTTGATTTCCA CTTAATACTCTCATTGAATGTTTGTTGTTTCGCATAATCTTAAATTGTGCTTATGACTTTCTGATTGACACACTAGCATT AAGTGTTATCTGTTGATGAGGCGTTTTCTGTTTTAGGCAGGATTTATGTATTATTTCATTAGTTTCTTGTGTAGGTAATT TTCCTGGATGATAATGGGTGACAAAGGGGAAAAATCATGTCCCATTTGCACTGAGGAGATGGACTTGACTGATCAGCAGC TGAAGCCATGCAAATGCGGCTACGAGGTTCAAACTTTTATTTACCGATGGATACGGATCTATTGTCGTGAATGACTTGAA TTTATCATGTTTGTGTTTCTTAATTTGTTGTTGAACACCCTGGTTTGATGCTTGTTCATGTGGTTGTGCATTATCCTTAT TCCAAAATCCGCTTTTTATGAAAATGGAAAGTTGATATCTAAACTGTACAGCATATTTGGCATTACTTAAGAGAAATAGT GAATTCTTATATATCGTAATGCCTATCCTGATAAATCATTTTTGTTTGTTCGCATTCTTTACTTTTCTGACAGATATGTG TATGGTGTTGGCACCATATAATGGAAATGGCACAGAAGAATGAATCCGAGGGTCGTTGTCCCGCCTGCCGTTCACCTTAT GATAAAGATCGTATTACATCAATGGCAGCTAACTGCCGAAGGTTGTTTTGGTTATGGCAGGAGTTCTAATTACCATATCA CATTTTATTGTTAAGCTATTGTTAGTGATAGATACTAATATGTTTTGCTTGCTTAAGCAGATTGGTTGCTGAAATGAATT CAAAGCATAAAAAGAAAATGCAGAAATTAAAGCCTAAATCATCAGATGGAAGGAAACATCTTAATGATGTTAGAGTCATT CAACGCCACTTAGTGTACATAATTGGACTGCCTCTTAATCTTGCGGATGAAGATGTGAGTTATTACAATATTGTTCTGTA TCTAACTTTTGCAGATGCATTTGTGTGAGACTGTGCAAGGCATAGTCCATATTGGTTTTTGCATCATTTAAATTGTAAAT TATCTTATCCATTTCTATCCTTAATTAATAACATTTTGTTTGTTTCAATTATACCAGCTACTTCAGCGTAGAGAGTACTT TGGCAGGTATGGAAAGGTTATGAAAGTGTCAATATCTCGTACAGCAACTGGCTTAATTCAACATTCTGCAAACAACACCT GTTGTGTGTAAGTTGTTATGATTGTCTCAAAAGCAATCACCCTACATTGAATTTCAACTAGAAATTATATTCTTTCCCCT GTTTATTTTATTATTTCTTTTATTTTTGTGTCTATTGAAGTATTGGTTTTGTCATGTTTCTTTCTATGTTTGGATACCAG TTCTTGTTGGCTGTTGTCTTGTATTTCTTGAATGAAAATTTCTTTTCTTCAGGTATATAAGTTACTCAAAAGAGTCTGAA GCTGTTCGATGTATTCAATCAGTGCATTGTTTTGTATTAGAAGGTCGACCATTGAGGTGAGTGTATGTCATTTTTATTGG GTTATGACTTGTGAGGCTTTCATGATCTTGTGAGTTGTGATGATATGTGGTTATTTACATTTGCAGGGCCTGTTTTGGAA CCACAAAGTATTGCCATGCATGGTTGAGAAATGTGGTAAAATAACACTCGAAGTCAAATTTATGAATGTTTTGTTACACG TAACACTGTGCTTTTGCTAATATATAAATTATCTTGCTGGTCCAGCCTTGCAACAATAGAGAATGTTTATATCTACATGA CCATGGTTCTCACGAAGATAGCTTTACCAAAGATGAACTAGTATTAGCATTTGCAAGGTATGATCGATTTTCATCCCGTG TGCCTTTTCTCCATTTTGAACTTGCTAGTTGCTATGTCTTATATATGTATCAGCTGGTTATCCTTTAGCCAAATTATTAA TTCAGTTGGGAGTTCAAATAGTAAGACTTACTCCCAAATCAATGTCTTTTTACTTCTCTGGGGCTGCTGGATGATTGCTT TCAGTTTTTATATTTTAATAAAACCTACGTAGTAGTTAAATATACAAAACAGATTGGTTATTTCATGCATAACTTAATCA TTTAGGTTTCCATCTAATTTACATAGATATCTCAAAAGAGGTATTGGGCGTACGCATGTCCTAATTCATTGTTGCTTTTA TATTATTCCTCCTGTATGACCCCGTTTTATTATTTATTTATTTTGTTTGGATTTCTTTTCCCTTCATCTTGCTAGTTAGA CTTGCTCATAATTTTCAGTACTTGGTATTATCTGTTGTTTGGGTTATGTCATCTTTGATAATATAGTTTTGGTGTTTATA TTTTGGATGTTAAAGGAGTAGAGTCCTACAAATCATTGGCGCTACAAATAATTTGCATCGGCGTTCAGGGAGTGTTTTAC CTCCACCAGTAGATGATGCTAGACATATGTCATCAGCCACCAAATTAGTGTCTAAAAGTCCTTCAGATGTGAGTTTAATG AACATCACTTTCATTGTAAATTTGTCTATTGTGGATGATATGTCACTTGAATATTCAACTATCTTTGCAGTTATTAGGAC TAGGCAGTGGACTAATTATCATATATCATTAACCTCACGTTTTTATTAAACTTGAAAATTTAGAACCAGATTAAAGGATC CTGTTCTGGCACTGGGGCTGCCAATTTGACCGCACTTCCTGCAGTAACTTCTTGGTAATTGGTTTACTGACTAAGTGACT AGTAGTATTTTCACATTAATTTGCTTGTAGCGTGAATGCTGACTCTTTTGGTATGTTTTACTAGGGCTAGGTGTGTATCT GGTAGCCTTCGGCAGGATTCGACTTCATCACGTTCTAATAATCTGGCCAATAGAAAGGTTGAAGCATCTAATGATCCCCA AGCCCTTGTAGGAGTTGCTTGCACTGAAAGGTCTACTCTGAATAAAAGATCAGGGGAAGCTGAAGATAGCTCTAAAGTGC ACTCCAATGATGTGTTCATTCCTTCAGAGTTGAACAAGCATCTTCACATTGGTGGAAATTCACAAACACGTGAGTCAAAT GTTTTCAATGAAGTTACTGTGTTGAAACATCCTAGCATTGTATTGTCTAACTGTGAAACAACTCTGGCAGCTTTTATGGG CAGTGATCAAGACATGGTAGCACCTTCTGTGAGCGAAAGCTTCCCGGAGCTCTCCAGATCACATTGTGATTTCAGCACTA ACAAAGCTGTTTCAAATAGGGATGTGCAGGGCTTATGTTCAGGGTTATCGTCTATTAGCATCAGTAGCCATCTTGAAGAT TCAAATTTCACTCCTGATTCAGACAGATTACTTTCTACTCAAAACTCTATCAATTCCTCTGTAGGGAAGCATTCAGAAGA TAATGAGTATTGGAATGAACAATCAACTATACCAGCTTTTTGGGAAGATATTGTTGTAGATGATGTACTAAACATAGACC AAGAACCACAAAATTTCAGTAAAAGCATCAACAATTCGCCTTGTCTCTCTCAGAATGTAAACAAATCAACCCATCAAGCA GAGCCACAAGATCAAATTTGTCACCAAAGTCATTTGAGGAGACCTTCTGAGTCTTTTACTGAACCCTTGGAGACAGGATT TGTGAAGCATGTGGAGAGTGAGGATATTACAGGAGTTGATGATAAGGCTGCATCAGACATGGGAGAAAACAGCATTATAT CTGACATTTTGTCTTTGGAATTAGATGCATGGGAAGATTCACTTGTTAAGCTGTTGGATGAAAGTGATGAACCATACACA CTCTTTAAAGCACCTACTTTGCGGAAAGTCCAAAACAAGAATCAGTCTAGGTTTTCCTTTGCCAGGCAGGATCATTTCAC AAATGACGCATCTGACTTGCAGCAATCGTTTGGGATTATTGGACATGAACCAAACGGGAACTATGCCTCGGGTGGTTTAA TGGGAAACAAAGATATGCTCACTGAGAAACACCCACATGTTTTCCCATCAGGCAATTCTGTGCAACCTGATAAATTTGTT GGAGGTCAGTCTTTTGTGCCCTTTATCGATTAATAACATGCTTATGTGCATGTTTGAAAAAAAATCAAGGCCAGAATCGT GTAAAAGCTTAAGCTACTGTGAGTAGCTTTTGCTGAAGTAAAGCGATTCCAAGCCTCTGAAATTTGGACTCAAACATGCC ATAAGTACTCCATATTTTTTAACTTGAGGGTTATTGTTTCCTTCCATTCAGGTCTTAGCTGCTGTCAATATTGCTTATAC TTTATTGAGTTTATATGCATAAATCTTTTAGTGCTCAAACTTTCATTTCTAGTTTGGTGTTTTAATTTACTGTGGCATTT TGCTTGTTTCTATTGATTGGATTTTCATTCCTTTATCCTTTACCTTCTTAAAGTTCCTGTAATCTCTCTTCAGCTTTATC TTTCTTGTTCACTGTTTAATAGTAGGAGAAATATGGTCTTTTGAGCACTTGCTACTCAGTGGATGAGTCTTTTTTGGGTG CTTCATTGGCTCATTAAGTAGTTCTGGGGCTTATTTTAGGTTTAAGATTATTTTAGTGCTTCTCATCCCCACAGCTGCTA CCATGTATATAAGTAGGGGTAATTTGTTCTTCACAGGATTTTTGTTATGTGCTTGTGAACTGAAGTTTAATAGTACTTTT CGCTTCTACAGTTTGTTTTATTTTTTCGGCTGTTATTCTTCCTGTATATATTTTATCTTCGTTTCCACTGTGTTGTCTAT ATGGATTGGATTGTAATCGGACAATCTTGCGCTGAGAAAAGTGTTTTGCAAGAACTTCAACTTTCCTGTGACAGCCAATT AAGGAGCTAAACATCTGCCAAAAGAACCTCAACTTTTTGGTCATAACTTATTAAGGAATCAAACTGTAATAAAAAGAGCA TTTTGATAATATTTATTAATTACAACAGATTTTTTAGGTCATAAATGCCATGTAGTGTTATTATGATTGATTATTTTATA TGAAGTTAGATTTTTTTTTGTATTTTCTATATTTTTTATCAACAAAAATATTTTTAGTTAAGCAGAGGTCCTGAGTTGGT AATAATCGAAGTTTTTTCCTGATGGTTGATAATTTTAGGACCTGAAACAATACTTCACTTCTATCTGTGACATATCTGGT CTCCTTACCCCTTATCGAATGACAAAAATTTAGAGCTTTAACATGACAAAAGTTTTTTCCCTTATTATTGATTGATGTTA GTTATGGTTGCTGTGGAACTTAGTTTTGATCAAACTTATATTTTCGCTCTTGTTTATAATTGTTGTTTATCAGTGGCAAA AGCTCATGCTTCAGGCCCACCTGGATTTGCAATGGCCAGCAGAATACCTCCTGGGTTTTCTTGTGGGAGAGTAGAACGGG GTTGTAATAGTTCTGGTATAACTTTCTTTATAGTTTGATACTCCACTTGTGTTATTTTCCCCTTCTGTTTCTATTCTTCG CTAAATTTACTTCTTACAGAGAAATTTCTCATAGATCTTCTACTTTCCAGTGAACTATTTGCAACAGCAGCATATTCCTC CATCTGCAAGTAATGCCAGGATAGGAGAGGTTCAATTTAACAATCCTTCAGTATTGGACCTTGGTAAGAACATAATGGAG CAAAGGCTGAATAGTGCATCATTTGACCTGAGGCAAACTTTACTTCCGCGATATAGTCTTGATGAAGATGAGGCTAGACT TAAGCTGTTAATGCAACAATGCCCACCTTCACAGAATTTTAAACTTCCAGATCAAATTGAAAATAGATTTTCGCCTCAAA GTGATGCTTATAGAATTTCTTCGAGGTTTCTTGATCAATTTCAGGCTACTACTCCATCGATTTATGAACAGTTACATTCT CAACAGTTCAGCAGTAATATTCTCGCATCAAATAACCAGTGGGGCGTCTGGAATGATGCCAAGTATTTCAGTGGCCTGTC TATGTCAGAAGTATTGAATAGTGAGAGAGTGGGATTGAACAATATCATGCCTACTTACGACAATGTCAAGTATTAAGAAT TCACTGATCTAGTTCACTCATGGTGGTGATTGTCTCAGTAATCTCTTCATTGCACAAATGAGCTCTTAAATAGTCATTGG TAATCGTCAACTACTCTTTTTTGTATGCTTAGCTTTACTGCTAAGCATTGGAATCTGGGTTTCCATATTATAGTTGGTGA CATAACTGGCAAATGGTGTCAGTTTTTTATATGGGGTGCATGTACCTTGGCCTTGAAGGTTAGTATGGTGAGTTTAACTC GTGATTTGGCAATATTATGTATTTGCATTTGTGTTTACATAGTAGGATGAGGTCTGGACTGTAACTTATAATCTTAAACT TCACTTCTAGTTTTTCTTTTAAATTCTTGCTGTTTATATGATTAGTTTAGGATAATGACTGTTATGTCCTCTATCTCTGC AGTTGAACTGGATGTCAAGCAGTTTGTCATCAAAGTACAGAAACTGATAGAGAGCCAAGCAGTTTGTCATCAAGCTACAG AAACTGATAGAGAGCTAAGATGTAAGCCTTATGGATCGGTAATTCATGCTAAGAATGGTGAAATATGATATCGAAACTTG ATGTTATCTTTAGACCTGAAGTAGTTTGTTCAGAATTTGTTACCAATCTTGAACTTGGAACTCCTGCTAGAACTGACAAT GTAGTTAGTGTATGCATATGAAAATGAATATAGTAGCTTCTGGGAAACACTTTAGACTAGGACGGAATGGAGCATAGAGC TGGCAACATCTCTATTTTTTTCACCACCTTAGAATTA
CDS sequence (LotjaGi5g1v0073600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAATGGGTGACAAAGGGGAAAAATCATGTCCCATTTGCACTGAGGAGATGGACTTGACTGATCAGCAGCTGAAGCC ATGCAAATGCGGCTACGAGATATGTGTATGGTGTTGGCACCATATAATGGAAATGGCACAGAAGAATGAATCCGAGGGTC GTTGTCCCGCCTGCCGTTCACCTTATGATAAAGATCGTATTACATCAATGGCAGCTAACTGCCGAAGATTGGTTGCTGAA ATGAATTCAAAGCATAAAAAGAAAATGCAGAAATTAAAGCCTAAATCATCAGATGGAAGGAAACATCTTAATGATGTTAG AGTCATTCAACGCCACTTAGTGTACATAATTGGACTGCCTCTTAATCTTGCGGATGAAGATCTACTTCAGCGTAGAGAGT ACTTTGGCAGGTATGGAAAGGTTATGAAAGTGTCAATATCTCGTACAGCAACTGGCTTAATTCAACATTCTGCAAACAAC ACCTGTTGTGTGTATATAAGTTACTCAAAAGAGTCTGAAGCTGTTCGATGTATTCAATCAGTGCATTGTTTTGTATTAGA AGGTCGACCATTGAGGGCCTGTTTTGGAACCACAAAGTATTGCCATGCATGGTTGAGAAATGTGCCTTGCAACAATAGAG AATGTTTATATCTACATGACCATGGTTCTCACGAAGATAGCTTTACCAAAGATGAACTAGTATTAGCATTTGCAAGGAGT AGAGTCCTACAAATCATTGGCGCTACAAATAATTTGCATCGGCGTTCAGGGAGTGTTTTACCTCCACCAGTAGATGATGC TAGACATATGTCATCAGCCACCAAATTAGTGTCTAAAAGTCCTTCAGATAACCAGATTAAAGGATCCTGTTCTGGCACTG GGGCTGCCAATTTGACCGCACTTCCTGCAGTAACTTCTTGGGCTAGGTGTGTATCTGGTAGCCTTCGGCAGGATTCGACT TCATCACGTTCTAATAATCTGGCCAATAGAAAGGTTGAAGCATCTAATGATCCCCAAGCCCTTGTAGGAGTTGCTTGCAC TGAAAGGTCTACTCTGAATAAAAGATCAGGGGAAGCTGAAGATAGCTCTAAAGTGCACTCCAATGATGTGTTCATTCCTT CAGAGTTGAACAAGCATCTTCACATTGGTGGAAATTCACAAACACCTTTTATGGGCAGTGATCAAGACATGGTAGCACCT TCTGTGAGCGAAAGCTTCCCGGAGCTCTCCAGATCACATTGTGATTTCAGCACTAACAAAGCTGTTTCAAATAGGGATGT GCAGGGCTTATGTTCAGGGTTATCGTCTATTAGCATCAGTAGCCATCTTGAAGATTCAAATTTCACTCCTGATTCAGACA GATTACTTTCTACTCAAAACTCTATCAATTCCTCTGTAGGGAAGCATTCAGAAGATAATGAGTATTGGAATGAACAATCA ACTATACCAGCTTTTTGGGAAGATATTGTTGTAGATGATGTACTAAACATAGACCAAGAACCACAAAATTTCAGTAAAAG CATCAACAATTCGCCTTGTCTCTCTCAGAATGTAAACAAATCAACCCATCAAGCAGAGCCACAAGATCAAATTTGTCACC AAAGTCATTTGAGGAGACCTTCTGAGTCTTTTACTGAACCCTTGGAGACAGGATTTGTGAAGCATGTGGAGAGTGAGGAT ATTACAGGAGTTGATGATAAGGCTGCATCAGACATGGGAGAAAACAGCATTATATCTGACATTTTGTCTTTGGAATTAGA TGCATGGGAAGATTCACTTGTTAAGCTGTTGGATGAAAGTGATGAACCATACACACTCTTTAAAGCACCTACTTTGCGGA AAGTCCAAAACAAGAATCAGTCTAGGTTTTCCTTTGCCAGGCAGGATCATTTCACAAATGACGCATCTGACTTGCAGCAA TCGTTTGGGATTATTGGACATGAACCAAACGGGAACTATGCCTCGGGTGGTTTAATGGGAAACAAAGATATGCTCACTGA GAAACACCCACATGTTTTCCCATCAGGCAATTCTGTGCAACCTGATAAATTTGTTGGAGTGGCAAAAGCTCATGCTTCAG GCCCACCTGGATTTGCAATGGCCAGCAGAATACCTCCTGGGTTTTCTTGTGGGAGAGTAGAACGGGGTTGTAATAGTTCT GTGAACTATTTGCAACAGCAGCATATTCCTCCATCTGCAAGTAATGCCAGGATAGGAGAGGTTCAATTTAACAATCCTTC AGTATTGGACCTTGGTAAGAACATAATGGAGCAAAGGCTGAATAGTGCATCATTTGACCTGAGGCAAACTTTACTTCCGC GATATAGTCTTGATGAAGATGAGGCTAGACTTAAGCTGTTAATGCAACAATGCCCACCTTCACAGAATTTTAAACTTCCA GATCAAATTGAAAATAGATTTTCGCCTCAAAGTGATGCTTATAGAATTTCTTCGAGGTTTCTTGATCAATTTCAGGCTAC TACTCCATCGATTTATGAACAGTTACATTCTCAACAGTTCAGCAGTAATATTCTCGCATCAAATAACCAGTGGGGCGTCT GGAATGATGCCAAGTATTTCAGTGGCCTGTCTATGTCAGAAGTATTGAATAGTGAGAGAGTGGGATTGAACAATATCATG CCTACTTACGACAATGTCAAGTATTAA
Protein sequence (LotjaGi5g1v0073600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIMGDKGEKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPYDKDRITSMAANCRRLVAE MNSKHKKKMQKLKPKSSDGRKHLNDVRVIQRHLVYIIGLPLNLADEDLLQRREYFGRYGKVMKVSISRTATGLIQHSANN TCCVYISYSKESEAVRCIQSVHCFVLEGRPLRACFGTTKYCHAWLRNVPCNNRECLYLHDHGSHEDSFTKDELVLAFARS RVLQIIGATNNLHRRSGSVLPPPVDDARHMSSATKLVSKSPSDNQIKGSCSGTGAANLTALPAVTSWARCVSGSLRQDST SSRSNNLANRKVEASNDPQALVGVACTERSTLNKRSGEAEDSSKVHSNDVFIPSELNKHLHIGGNSQTPFMGSDQDMVAP SVSESFPELSRSHCDFSTNKAVSNRDVQGLCSGLSSISISSHLEDSNFTPDSDRLLSTQNSINSSVGKHSEDNEYWNEQS TIPAFWEDIVVDDVLNIDQEPQNFSKSINNSPCLSQNVNKSTHQAEPQDQICHQSHLRRPSESFTEPLETGFVKHVESED ITGVDDKAASDMGENSIISDILSLELDAWEDSLVKLLDESDEPYTLFKAPTLRKVQNKNQSRFSFARQDHFTNDASDLQQ SFGIIGHEPNGNYASGGLMGNKDMLTEKHPHVFPSGNSVQPDKFVGVAKAHASGPPGFAMASRIPPGFSCGRVERGCNSS VNYLQQQHIPPSASNARIGEVQFNNPSVLDLGKNIMEQRLNSASFDLRQTLLPRYSLDEDEARLKLLMQQCPPSQNFKLP DQIENRFSPQSDAYRISSRFLDQFQATTPSIYEQLHSQQFSSNILASNNQWGVWNDAKYFSGLSMSEVLNSERVGLNNIM PTYDNVKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 888 | 886 | 0.0 | ||
PANTHER | 3 | 888 | 886 | 0.0 | – | |
Gene3D | 3 | 81 | 79 | 3.3E-21 | ||
SUPERFAMILY | 5 | 69 | 65 | 4.86E-14 | – | |
CDD | 11 | 60 | 50 | 3.61964E-22 | ||
ProSiteProfiles | 11 | 59 | 49 | 10.055 | ||
Pfam | 11 | 63 | 53 | 2.9E-21 | – | |
SUPERFAMILY | 106 | 192 | 87 | 9.23E-13 | ||
CDD | 107 | 206 | 100 | 1.10286E-46 | ||
ProSiteProfiles | 112 | 198 | 87 | 9.729 | ||
Gene3D | 113 | 194 | 82 | 5.1E-23 | ||
SMART | 113 | 194 | 82 | 3.1E-8 | ||
SMART | 113 | 194 | 82 | 1.4E-4 | ||
Pfam | 114 | 192 | 79 | 1.7E-4 | ||
MobiDBLite | 315 | 334 | 20 | - | – | |
MobiDBLite | 315 | 333 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
Expression pattern of LotjaGi5g1v0073600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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