Domain Predictions — View

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cd12438

Source: CDD

Description

RRM_CNOT4

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 12

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0037639.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|357453719\|ref\|XP_003597140.1\|	Domains G3DSA:3.30.40.10 G3DSA:3.30.70.330 IPR000504 IPR001841 IPR003954 IPR012677 IPR013083 PF00076 PF14570 PS50089 PS50102 PTHR12603 PTHR12603:SF3 SM00360 SM00361 SSF54928 SSF57850 cd12438 mobidb-lite	19
Lj0g3v0037639.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|357453719\|ref\|XP_003597140.1\|	Domains G3DSA:3.30.40.10 G3DSA:3.30.70.330 IPR000504 IPR001841 IPR003954 IPR012677 IPR013083 PF00076 PF14570 PS50089 PS50102 PTHR12603 PTHR12603:SF3 SM00360 SM00361 SSF54928 SSF57850 cd12438 mobidb-lite	19
Lj3g3v3097580.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|357472457\|ref\|XP_003606513.1\|	Domains G3DSA:3.30.40.10 G3DSA:3.30.70.330 IPR000504 IPR001841 IPR003954 IPR012677 IPR013083 PF00076 PF14570 PS50089 PS50102 PTHR12603 PTHR12603:SF3 SM00360 SM00361 SSF54928 SSF57850 cd12438	18
Lj3g3v3097580.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|357472457\|ref\|XP_003606513.1\|	Domains G3DSA:3.30.40.10 G3DSA:3.30.70.330 IPR000504 IPR001841 IPR003954 IPR012677 IPR013083 PF00076 PF14570 PS50089 PS50102 PTHR12603 PTHR12603:SF3 SM00360 SM00361 SSF54928 SSF57850 cd12438 mobidb-lite	19
Lj5g3v0616120.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|357472457\|ref\|XP_003606513.1\|	Domains G3DSA:3.30.40.10 G3DSA:3.30.70.330 IPR000504 IPR001841 IPR003954 IPR012677 IPR013083 PF14570 PS50089 PS50102 PTHR12603 PTHR12603:SF3 SM00360 SM00361 SSF54928 SSF57850 cd12438 mobidb-lite	18
LotjaGi2g1v0365000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp\|O95628\|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr\|A0A151TN31\|A0A151TN31_CAJCA CCR4-NOT transcription complex subunit 4; Found in the gene: LotjaGi2g1v0365000	Domains G3DSA:3.30.40.10 G3DSA:3.30.70.330 IPR000504 IPR001841 IPR003954 IPR012677 IPR013083 IPR034261 IPR035979 IPR039515 IPR039780 PF00076 PF14570 PS50089 PS50102 PTHR12603 PTHR12603:SF16 SM00360 SM00361 SSF54928 SSF57850 cd12438 cd16618 mobidb-lite	24
LotjaGi3g1v0270600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	CCR4-NOT transcription complex subunit 4; TAIR: AT5G60170.2 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp\|O95628\|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr\|A0A0R0FWC0\|A0A0R0FWC0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0270600	Domains Coil G3DSA:3.30.40.10 G3DSA:3.30.70.330 IPR000504 IPR001841 IPR003954 IPR012677 IPR013083 IPR034261 IPR035979 IPR039515 IPR039780 PF00076 PF14570 PS50089 PS50102 PTHR12603 PTHR12603:SF16 SM00360 SM00361 SSF54928 SSF57850 cd12438 cd16618 mobidb-lite	25
LotjaGi3g1v0270600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp\|O95628\|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr\|K7M9K7\|K7M9K7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0270600	Domains G3DSA:3.30.40.10 G3DSA:3.30.70.330 IPR000504 IPR001841 IPR003954 IPR012677 IPR013083 IPR034261 IPR035979 IPR039515 IPR039780 PF00076 PF14570 PS50089 PS50102 PTHR12603 PTHR12603:SF16 SM00360 SM00361 SSF54928 SSF57850 cd12438 cd16618 mobidb-lite	24
LotjaGi5g1v0073600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp\|O95628\|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr\|K7LHH2\|K7LHH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073600	Domains G3DSA:3.30.40.10 G3DSA:3.30.70.330 IPR000504 IPR001841 IPR003954 IPR012677 IPR013083 IPR034261 IPR035979 IPR039515 IPR039780 PF00076 PF14570 PS50089 PS50102 PTHR12603 PTHR12603:SF6 SM00360 SM00361 SSF54928 SSF57850 cd12438 cd16618 mobidb-lite	24
LotjaGi5g1v0073600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp\|O95628\|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr\|K7LHH2\|K7LHH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073600	Domains G3DSA:3.30.40.10 G3DSA:3.30.70.330 IPR000504 IPR001841 IPR003954 IPR012677 IPR013083 IPR034261 IPR035979 IPR039515 IPR039780 PF00076 PF14570 PS50089 PS50102 PTHR12603 PTHR12603:SF6 SM00360 SM00361 SSF54928 SSF57850 cd12438 cd16618 mobidb-lite	24
LotjaGi5g1v0073600.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp\|O95628\|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr\|K7LHH2\|K7LHH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073600	Domains G3DSA:3.30.40.10 G3DSA:3.30.70.330 IPR000504 IPR001841 IPR003954 IPR012677 IPR013083 IPR034261 IPR035979 IPR039515 IPR039780 PF00076 PF14570 PS50089 PS50102 PTHR12603 PTHR12603:SF6 SM00360 SM00361 SSF54928 SSF57850 cd12438 cd16618 mobidb-lite	24
LotjaGi5g1v0073600.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp\|O95628\|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr\|K7LHH2\|K7LHH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073600	Domains G3DSA:3.30.40.10 G3DSA:3.30.70.330 IPR000504 IPR001841 IPR003954 IPR012677 IPR013083 IPR034261 IPR035979 IPR039515 IPR039780 PF00076 PF14570 PS50089 PS50102 PTHR12603 PTHR12603:SF6 SM00360 SM00361 SSF54928 SSF57850 cd12438 cd16618 mobidb-lite	24

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	8.33