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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0228700 |
| Transcript ID | LotjaGi5g1v0228700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase dbp3; TAIR: AT3G05740.1 RECQ helicase l1; Swiss-Prot: sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1; TrEMBL-Plants: tr|A0A151U4Z2|A0A151U4Z2_CAJCA Bloom syndrome protein isogeny; Found in the gene: LotjaGi5g1v0228700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53595191..53599911) extracted from Lotus japonicus Gifu genome v1.2.
AGAAGTAGCCAGAATCAGCAGCCGGAGCACGATTTGGAGTTAGAGAAAACTCGCTTAATCAGCTTAGCTCTCGAATTCGG CTTCGACCAACACTCCGCCGACCAATGCTTCAACCGCCTCCTCGATCTCTACGGCGAAGACGGTCGCGATTTCATCACCG TCGAGCACTGCGGCGACGATTTCCTCACGGTGTTGGCGGAGTCGATGCCAGCCACTGAGGAATGGGATGACGATCCGCGC GAAATGGAGACTCAAGCTTGTGGAACGCTGTCTCACTTGCTTGAGAAAAGTGTTCCTGCTTCCGCTGATGGTGCCGCCTC CGCGTGCTTCATTGATGTTAGTGATGATTCGCCTCCTCAACCTCGCAAACTCCGAAGCAAAGTGGTGGAGTTGGGTTCCA GTGAAGATGAGGAGGATCGTGTGGAGTTTGGCTTTTCAAAGGGAAAATCTGCTGCATTTCCTGCTCAACATTCCCCAATT TCTGTGGTAACTAATTAGTATTAACTTAATGTTTCTGAATTCGCAGGCTTGTTAATAGCGCGGAATAGTGCTATAGCGTA GCACCCTGGGGTTCACCGCTACTCCACTATTCACCGCTATAGCGCTCGAAATAGCGTTTTTTGGGCTTGCTGCTACGCTA CGCTATCCGCCATTAACAACCCTGTGAATTCGGCATCATGACTCTTTTTTGTTACTGATTTCAATCTGTGGTAATGAGCA TAACAAGTAGTAGTATTTAAGGTATTTAGATGGCAAAGGTTGTAGGCAGAGAATTCCCTTGACTATTCCATGTGAGCATT GATTTTCCGTTATTGTAAGACTAAGATGACAATGTAAAATTGTTGAGAGTATGGCTCATGGGTAATGTCCTGTAACACTA ACCCAAGGGTATTCTGAATCTTAGTCAATATACGAAACTATAGCTGCCCTGTAGTCGCAGAAGTAGGCAATTTGGCTGAA CTGTGTGGCCAAAGTCTTGTGTGTTTCTCTTTACTCTGATTCGGTATTCGCGTTACTGTTCTAACTTATACTGAATAGTT AATGTATGTTATAGGATGGCAGAAGTGGCATAACCCAAGGCTCAGTTTCATCAACTTCCAGCAAGATACAATCCTCCTTT GCATCGAAGGACAGATACAATACTCTAACTTATGAAGAATTGCAGGCGCTAGATGATATCGAATTGGCAAATGTTGTTAT CTTTGGTAACAAGTCGCTTCGACCATTGCAGCATCAAGCATGTAAAGCAGCTTTGGCAAAGCAAGATTCTTTTATTCTTA TGCCTACTGGGGGTGGTAAATCACTTTGCTATCAGGTCATTTCTTTTTCTTAAGCCCTATTCTAATATATTTTTTGGTCA TCTTCTTCTAACAACTTAATATCATTGATAGTTATATTTTTTTGAAGTAACTATTCAATCAAAAATGCTAAAGATCTAGA AATTCAAATTCAAATTATTGCAATGTGTATCATGAATGTCCCTGTTTTTTTCATAGCTTCAATGGCAGTTACAAGCTGTT CTTTGTACCAAAATTACATTAATTGGTGAAATATTGTTATCTGTCATCTTATAGTTATAGCTTATATACTTTTGAACATG TTTATTTTAATTTGTGTTTACAGCTTCCAGCAACTCTTCTACCTGGAGTTACAGTAGTTGTATCTCCCTTACTTTCACTC ATTCAGGATCAGATAATAACACTTAACCTGAAGTTTGGAATACCTGCTACTTTTTTGAATTCTCAACAAACTGCTTCCCA GGCCACAGCTGTCCTCCAAGAGCTAAGGTGAGATTCACTTTCTTGTATATTCTTATCTATCAAGTTCTGTCCTATAATTT TCCCTTGAAAAAAGTGTATAGTTTTATTTGAAAAATACCTTTCAGATAACTGATTGCTTTCGTGTTTAAATTTTTCTTAC ATCAGTTTTCTTGTTTCTAGAAAAGACAAACCGTCATGCAAGCTCTTGTATGTGACACCAGAGAGAATTGCTGGAAATCA ATCATTTCGTGAGATTCTAAAATACATGCATCAAAAGGTAATTTTTTATTGATTTGAGTACATTTTATGAAACTACTTTC TTATGTGCATTTGTGTTTGGTGCTCCCTATTACAGGGACTGCTTGCAGGTTTTGTTGTCGATGAGGCACACTGTGTTAGG TATGCCTTGTATTTTTGTGCTTAATCCCATTAACTCTTTTATATCAATGACATTAGTTCTATGAAATTTCTGAGACACAA CTTTGTTATTTATTCTACCTTCTTGAAGCAGCACTGCCCCATGTGGTCTGTCTCGTATGTGACTGACTGATTACAATATA TGAACAAACCCCAAAATTGTAACTACTGATGAAGTGCTGTTATTGCATAAAATGTCATTTTGAATTGAGCTCTTGTGGTG ACCTTTAAGAAGGCAGATCAAGTGAAATTGGACAGCTTGATTACAGTAACAAGCTTTGGATATGGTGAGATCACAACATC AAAGGTATGACCTTAGGTCATCTGGCTGAAGGTCTTCAAATGATGCTTCCTTAAGTTCATAACTTCTCAAAAAAATTAAA AAAAATGGAGAAAAAGGACTTCATATGAAAATGGGTTAGAATTAGTAGAAATAAGGATTAATTTCTTAATTCGGAGTTCT AACACCGGATCTTTTTGAATTAACTGGTATGTCATTTCGTAGGCCAGAAGTCTGTATTCAGTCTAGTTTTTGGTTTTCCT GGGTGATGCAGTTCTTGGCTGCTTAAGATACAAAATTGATATATGAATATGAATTATTTTCTTAGCTTAAAGTTACACAT AGTTCCATTACAAGTACTATGAATTTTTCTGATGAAAATACTACAAAGTTGAGCTGACAGAACAGTGGAGGCAGGCCTCA AACAGTTAGAGATGGGGGGGTTGTTAAAGCTGAATGATTTCTGTTGTTGTAAGAGATATCTATTACTCACTACTTTTAAA TTGAAAATTATACTTTTTCAGCCAGTGGGGACATGATTTCCGTCCTGATTATCGGGCATTGGGATCTCTTAAGCTAAACT TTCCAGGTGTACCTATCATGGCATTGACTGCCACTGCAACCCACTCAGTTCGCGAGGTAATTAGAAAAGCAGATTGCAAG TATTGACAAATCTATCTAGTATTAATCCTCCCTTTTTAATTTTCCTTTAAATTGCATCTGTTTCAGGACATCTTAAACGC TTTGAGAATCCCGCGTGCACTTGTTCTTGAAAGAAGCTTTGACAGACCAAATTTGAAATATGAAGTGATTGGTAAGACAA AGGAACCGCTGAAGCAACTTGGAGAGCTAGTAATGGCTCGTTTCAAGAATCAGTGTGGAATTGTTTACTGCCTGTCAAAG AATGAATGTGTTGAGGTCTCAAAGTTTTTGAATGAGAAATGTAAAATTAAGACAGTGTATTACCATGCTGGCTTGGCTGC CCGTCAGAGAGTTTCTATTCAAAAGAAATGGTATGACGGAGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGAATGG GGATTGACAAACCTGACGTTGTAAGTTGACTTACGTTTTCTTTGTAACTATTATGATATTGCTGGTATCACTCTCATTTT GGTGATTGACATTGTTTATGACTATCTCTATTAAGGCAGCTTCATGATTGATATATCAGATAAACTAAGCGGTCTATTAC TGATATGCTACATATATACTGAACCAGTGTGGTGACTACGAAATGAAATAGAGGGACCAACCCTCATGTATTACAATTTT CTAGCACAGCATATATCAAAGACCTTCATGTATACATAGGAAGTCTTCTCCAAGGCTTGTGTTCATGATTGACATAACTG AGTTAAAATGCAAATGATCATTTGCATAACTATTCAAATTCCCAGTGATATCTCCTTATCTATCCTGCCTAAATGCATTG AAAGTATAAACCCAAAATCTAAAGCCATTATAGATCAAGTCTGCCTAATAAACATAAATATAGCTTATATATTAGTGCAG CATTTGTATGCTTGGCTAGGGCAAATTGTCACATGTAAGGTGAGTAAATGCTCTACAAATTGCTAGTTATAGAATATTCA TACTTCAATAAAATATTCTTAGTGATATATGAGTTTTACAGTCTCTGTTACTCAAATTATCCATTTCTTGTCATGTGTTT TCAGCGCTTTGTCATCCACAATACAATGTCAAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGATA ATCTTCCTTCAGTTTGCATTGCTCTGTACCAAAAGAAGGATTTTAGTAGAGTAGTATGCTTGATAAGAAACGGACAAGGA TATAAAAGGGACAGTTTTAAGTTAGCAATGGCTCAAGCCAAAAAGATGCAACAGTACTGTGAACTAAAGGTAAGCAAGCT CCCTTATATTTCAACGTCTGTTGTTTTATTCTTTGTCCCTCCCACATGCATCTAGTCAGTTTTAATACTGTTGTAAATAT TTGTTCAAAAAAATAAAACCGTTGTAAATAGGGGTTTAAAAGTTTGATTTATAGACATGAATTTTCGTATAAAATGTCCA TAAATTTTTCATCCATGAAACTTCTAATTTTATCTGGTTTGAATGTTTAGGTTGAATGTCGAAGAGAAACTTTGCTCAAA CACTTTGGAGAAGATTTTGACAGAAAAGCATGCAAGCATGGATCTAACCCCTGTGATAACTGTCTCAAGACTGCATCCTG A
CDS sequence (LotjaGi5g1v0228700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGCCACTGAGGAATGGGATGACGATCCGCGCGAAATGGAGACTCAAGCTTGTGGAACGCTGTCTCACTTGCTTGA GAAAAGTGTTCCTGCTTCCGCTGATGGTGCCGCCTCCGCGTGCTTCATTGATGTTAGTGATGATTCGCCTCCTCAACCTC GCAAACTCCGAAGCAAAGTGGTGGAGTTGGGTTCCAGTGAAGATGAGGAGGATCGCTTGTTAATAGCGCGGAATAGTGCT ATAGATGGCAGAAGTGGCATAACCCAAGGCTCAGTTTCATCAACTTCCAGCAAGATACAATCCTCCTTTGCATCGAAGGA CAGATACAATACTCTAACTTATGAAGAATTGCAGGCGCTAGATGATATCGAATTGGCAAATGTTGTTATCTTTGGTAACA AGTCGCTTCGACCATTGCAGCATCAAGCATGTAAAGCAGCTTTGGCAAAGCAAGATTCTTTTATTCTTATGCCTACTGGG GGTGGTAAATCACTTTGCTATCAGCTTCCAGCAACTCTTCTACCTGGAGTTACAGTAGTTGTATCTCCCTTACTTTCACT CATTCAGGATCAGATAATAACACTTAACCTGAAGTTTGGAATACCTGCTACTTTTTTGAATTCTCAACAAACTGCTTCCC AGGCCACAGCTGTCCTCCAAGAGCTAAGAAAAGACAAACCGTCATGCAAGCTCTTGTATGTGACACCAGAGAGAATTGCT GGAAATCAATCATTTCGTGAGATTCTAAAATACATGCATCAAAAGGGACTGCTTGCAGGTTTTGTTGTCGATGAGGCACA CTGTGTTAGCCAGTGGGGACATGATTTCCGTCCTGATTATCGGGCATTGGGATCTCTTAAGCTAAACTTTCCAGGTGTAC CTATCATGGCATTGACTGCCACTGCAACCCACTCAGTTCGCGAGGACATCTTAAACGCTTTGAGAATCCCGCGTGCACTT GTTCTTGAAAGAAGCTTTGACAGACCAAATTTGAAATATGAAGTGATTGGTAAGACAAAGGAACCGCTGAAGCAACTTGG AGAGCTAGTAATGGCTCGTTTCAAGAATCAGTGTGGAATTGTTTACTGCCTGTCAAAGAATGAATGTGTTGAGGTCTCAA AGTTTTTGAATGAGAAATGTAAAATTAAGACAGTGTATTACCATGCTGGCTTGGCTGCCCGTCAGAGAGTTTCTATTCAA AAGAAATGGTATGACGGAGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGAATGGGGATTGACAAACCTGACGTTCG CTTTGTCATCCACAATACAATGTCAAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGATAATCTTC CTTCAGTTTGCATTGCTCTGTACCAAAAGAAGGATTTTAGTAGAGTAGTATGCTTGATAAGAAACGGACAAGGATATAAA AGGGACAGTTTTAAGTTAGCAATGGCTCAAGCCAAAAAGATGCAACAGTACTGTGAACTAAAGGTTGAATGTCGAAGAGA AACTTTGCTCAAACACTTTGGAGAAGATTTTGACAGAAAAGCATGCAAGCATGGATCTAACCCCTGTGATAACTGTCTCA AGACTGCATCCTGA
Protein sequence (LotjaGi5g1v0228700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPATEEWDDDPREMETQACGTLSHLLEKSVPASADGAASACFIDVSDDSPPQPRKLRSKVVELGSSEDEEDRLLIARNSA IDGRSGITQGSVSSTSSKIQSSFASKDRYNTLTYEELQALDDIELANVVIFGNKSLRPLQHQACKAALAKQDSFILMPTG GGKSLCYQLPATLLPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTASQATAVLQELRKDKPSCKLLYVTPERIA GNQSFREILKYMHQKGLLAGFVVDEAHCVSQWGHDFRPDYRALGSLKLNFPGVPIMALTATATHSVREDILNALRIPRAL VLERSFDRPNLKYEVIGKTKEPLKQLGELVMARFKNQCGIVYCLSKNECVEVSKFLNEKCKIKTVYYHAGLAARQRVSIQ KKWYDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPSVCIALYQKKDFSRVVCLIRNGQGYK RDSFKLAMAQAKKMQQYCELKVECRRETLLKHFGEDFDRKACKHGSNPCDNCLKTAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 93 | 327 | 235 | 5.3E-82 | – | |
| PANTHER | 112 | 533 | 422 | 4.4E-178 | – | |
| PANTHER | 112 | 533 | 422 | 4.4E-178 | – | |
| CDD | 130 | 327 | 198 | 6.11989E-97 | – | |
| TIGRFAM | 130 | 535 | 406 | 9.6E-151 | ||
| SMART | 132 | 336 | 205 | 3.1E-26 | ||
| Pfam | 138 | 306 | 169 | 4.2E-15 | ||
| ProSiteProfiles | 144 | 320 | 177 | 19.783 | ||
| SUPERFAMILY | 176 | 472 | 297 | 7.62E-52 | ||
| Gene3D | 328 | 536 | 209 | 6.1E-61 | – | |
| CDD | 328 | 461 | 134 | 9.17824E-65 | – | |
| ProSiteProfiles | 342 | 492 | 151 | 18.481 | ||
| Pfam | 347 | 451 | 105 | 5.0E-16 | ||
| SMART | 370 | 452 | 83 | 1.7E-23 | ||
| Pfam | 464 | 533 | 70 | 9.6E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA recombination | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. |
Expression pattern of LotjaGi5g1v0228700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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