Domain Predictions — View

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cd18794

Source: CDD

Description

SF2_C_RecQ

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 14

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi2g1v0344800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase DeaD; TAIR: AT1G31360.1 RECQ helicase L2; Swiss-Prot: sp\|Q9FT73\|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34; TrEMBL-Plants: tr\|A0A151RUE2\|A0A151RUE2_CAJCA ATP-dependent DNA helicase Q1; Found in the gene: LotjaGi2g1v0344800	Domains Coil G3DSA:1.10.10.10 G3DSA:1.10.150.80 G3DSA:3.40.50.300 IPR001650 IPR002121 IPR004589 IPR011545 IPR014001 IPR018982 IPR027417 IPR032284 IPR036388 PF00270 PF00271 PF00570 PF09382 PF16124 PS50967 PS51192 PS51194 PTHR13710 PTHR13710:SF72 SM00487 SM00490 SM00956 SSF52540 TIGR00614 cd18015 cd18794	30
LotjaGi4g1v0329000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase DeaD; TAIR: AT1G27880.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q0WVW7\|RQL5_ARATH ATP-dependent DNA helicase Q-like 5; TrEMBL-Plants: tr\|I1KRZ4\|I1KRZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0329000	Domains G3DSA:3.40.50.300 IPR001650 IPR002464 IPR004589 IPR011545 IPR014001 IPR027417 PF00270 PF00271 PS00690 PS51192 PS51194 PTHR13710 PTHR13710:SF108 SM00487 SM00490 SSF52540 TIGR00614 cd18018 cd18794 mobidb-lite	21
LotjaGi5g1v0222800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase DeaD; TAIR: AT5G27680.1 RECQ helicase SIM; Swiss-Prot: sp\|Q9FT69\|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM; TrEMBL-Plants: tr\|G7I8P0\|G7I8P0_MEDTR RecQ family ATP-dependent DNA helicase; Found in the gene: LotjaGi5g1v0222800	Domains G3DSA:1.10.10.10 G3DSA:1.10.8.10 G3DSA:3.40.50.300 IPR001650 IPR004589 IPR009060 IPR011545 IPR014001 IPR015940 IPR027417 IPR032284 IPR036388 PF00270 PF00271 PF16124 PS50030 PS51192 PS51194 PTHR13710 PTHR13710:SF69 SM00487 SM00490 SSF46934 SSF52540 TIGR00614 cd17920 cd18794 mobidb-lite	28
LotjaGi5g1v0228700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase dbp3; TAIR: AT3G05740.1 RECQ helicase l1; Swiss-Prot: sp\|Q9FT74\|RQL1_ARATH ATP-dependent DNA helicase Q-like 1; TrEMBL-Plants: tr\|A0A151U4Z2\|A0A151U4Z2_CAJCA Bloom syndrome protein isogeny; Found in the gene: LotjaGi5g1v0228700	Domains G3DSA:3.40.50.300 IPR001650 IPR004589 IPR011545 IPR014001 IPR027417 IPR032284 PF00270 PF00271 PF16124 PS51192 PS51194 PTHR13710 PTHR13710:SF105 SM00487 SM00490 SSF52540 TIGR00614 cd17920 cd18794	20
LotjaGi5g1v0228700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase DeaD; TAIR: AT3G05740.1 RECQ helicase l1; Swiss-Prot: sp\|Q9FT74\|RQL1_ARATH ATP-dependent DNA helicase Q-like 1; TrEMBL-Plants: tr\|A0A151U4Z2\|A0A151U4Z2_CAJCA Bloom syndrome protein isogeny; Found in the gene: LotjaGi5g1v0228700	Domains G3DSA:3.40.50.300 IPR001650 IPR004589 IPR011545 IPR014001 IPR027417 IPR032284 PF00270 PF00271 PF16124 PS51192 PS51194 PTHR13710 PTHR13710:SF105 SM00487 SM00490 SSF52540 TIGR00614 cd17920 cd18794	20
LotjaGi5g1v0228700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase dbp3; TAIR: AT3G05740.1 RECQ helicase l1; Swiss-Prot: sp\|Q9FT74\|RQL1_ARATH ATP-dependent DNA helicase Q-like 1; TrEMBL-Plants: tr\|A0A151U4Z2\|A0A151U4Z2_CAJCA Bloom syndrome protein isogeny; Found in the gene: LotjaGi5g1v0228700	Domains G3DSA:3.40.50.300 IPR001650 IPR004589 IPR011545 IPR014001 IPR027417 IPR032284 PF00270 PF00271 PF16124 PS51192 PS51194 PTHR13710 PTHR13710:SF105 SM00487 SM00490 SSF52540 TIGR00614 cd17920 cd18794	20
LotjaGi6g1v0046900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase DeaD; TAIR: AT1G31360.1 RECQ helicase L2; Swiss-Prot: sp\|Q9CL21\|RECQ_PASMU ATP-dependent DNA helicase RecQ; TrEMBL-Plants: tr\|A0A0B2QEX8\|A0A0B2QEX8_GLYSO Werner syndrome ATP-dependent helicase like; Found in the gene: LotjaGi6g1v0046900	Domains G3DSA:1.10.10.10 G3DSA:1.10.150.80 G3DSA:3.40.50.300 IPR001650 IPR002121 IPR004589 IPR010997 IPR011545 IPR014001 IPR018982 IPR027417 IPR029491 IPR032284 IPR036388 IPR036390 PF00270 PF00271 PF00570 PF09382 PF14493 PF16124 PS50967 PS51192 PS51194 PTHR13710 PTHR13710:SF120 SM00341 SM00487 SM00490 SM00956 SSF46785 SSF47819 SSF52540 TIGR00614 cd17920 cd18794	36
LotjaGi6g1v0223800_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent DNA helicase; TAIR: AT4G35740.2 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q9FT72\|RQL3_ARATH ATP-dependent DNA helicase Q-like 3; TrEMBL-Plants: tr\|A0A0R0I8N6\|A0A0R0I8N6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0223800_LC	Domains Coil G3DSA:3.40.50.300 IPR001650 IPR027417 IPR032284 NON_CYTOPLASMIC_DOMAIN PF16124 PS51194 PTHR13710 PTHR13710:SF134 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF52540 cd18794 mobidb-lite	17
LotjaGi6g1v0223800_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase RhlB; TAIR: AT4G35740.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q9FT72\|RQL3_ARATH ATP-dependent DNA helicase Q-like 3; TrEMBL-Plants: tr\|A0A0L9UBS6\|A0A0L9UBS6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0223800_LC	Domains G3DSA:3.40.50.300 IPR001650 IPR004589 IPR014001 IPR027417 PS51192 PS51194 PTHR13710 PTHR13710:SF134 SSF52540 TIGR00614 cd17920 cd18794	13
LotjaGi6g1v0223800_LC.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase RhlB; TAIR: AT4G35740.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q9FT72\|RQL3_ARATH ATP-dependent DNA helicase Q-like 3; TrEMBL-Plants: tr\|A0A151RMA8\|A0A151RMA8_CAJCA ATP-dependent DNA helicase Q5; Found in the gene: LotjaGi6g1v0223800_LC	Domains G3DSA:3.40.50.300 IPR001650 IPR004589 IPR014001 IPR027417 PS51192 PS51194 PTHR13710 PTHR13710:SF134 SSF52540 TIGR00614 cd17920 cd18794	13
LotjaGi6g1v0223800_LC.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent DNA helicase; TAIR: AT4G35740.2 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q9FT72\|RQL3_ARATH ATP-dependent DNA helicase Q-like 3; TrEMBL-Plants: tr\|A0A0B2PX78\|A0A0B2PX78_GLYSO ATP-dependent DNA helicase Q-like 3; Found in the gene: LotjaGi6g1v0223800_LC	Domains Coil G3DSA:3.40.50.300 IPR001650 IPR027417 IPR032284 PF16124 PS51194 PTHR13710 PTHR13710:SF134 SSF52540 cd18794 mobidb-lite	12
LotjaGi6g1v0223800_LC.7 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase DeaD; TAIR: AT4G35740.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q9FT72\|RQL3_ARATH ATP-dependent DNA helicase Q-like 3; TrEMBL-Plants: tr\|A0A151RMA8\|A0A151RMA8_CAJCA ATP-dependent DNA helicase Q5; Found in the gene: LotjaGi6g1v0223800_LC	Domains G3DSA:3.40.50.300 IPR004589 IPR011545 IPR014001 IPR027417 PF00270 PS51192 PTHR13710 PTHR13710:SF134 SM00487 SSF52540 TIGR00614 cd17920 cd18794	14
LotjaGi6g1v0361700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase DeaD; TAIR: AT1G10930.1 DNA helicase (RECQl4A); Swiss-Prot: sp\|Q8L840\|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A; TrEMBL-Plants: tr\|G7INR2\|G7INR2_MEDTR ATP-dependent DNA helicase RecQ family protein; Found in the gene: LotjaGi6g1v0361700	Domains Coil G3DSA:1.10.10.10 G3DSA:1.10.150.80 G3DSA:3.40.50.300 IPR001650 IPR002121 IPR002464 IPR004589 IPR010997 IPR011545 IPR014001 IPR018982 IPR027417 IPR032284 IPR036388 PF00270 PF00271 PF00570 PF09382 PF16124 PS00690 PS50967 PS51192 PS51194 PTHR13710 PTHR13710:SF128 SM00341 SM00487 SM00490 SM00956 SSF47819 SSF52540 TIGR00614 cd17920 cd18794 mobidb-lite	36
LotjaGi6g1v0361700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase DeaD; TAIR: AT1G10930.1 DNA helicase (RECQl4A); Swiss-Prot: sp\|Q8L840\|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A; TrEMBL-Plants: tr\|G7INR2\|G7INR2_MEDTR ATP-dependent DNA helicase RecQ family protein; Found in the gene: LotjaGi6g1v0361700	Domains Coil G3DSA:1.10.10.10 G3DSA:1.10.150.80 G3DSA:3.40.50.300 IPR001650 IPR002121 IPR002464 IPR004589 IPR010997 IPR011545 IPR014001 IPR018982 IPR027417 IPR032284 IPR036388 PF00270 PF00271 PF00570 PF09382 PF16124 PS00690 PS50967 PS51192 PS51194 PTHR13710 PTHR13710:SF128 SM00341 SM00487 SM00490 SM00956 SSF47819 SSF52540 TIGR00614 cd17920 cd18794 mobidb-lite	36

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	7.14