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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0243900 |
| Transcript ID | LotjaGi5g1v0243900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G02560.1 nuclear encoded CLP protease 5; Swiss-Prot: sp|Q9S834|CLPP5_ARATH ATP-dependent Clp protease proteolytic subunit 5, chloroplastic; TrEMBL-Plants: tr|V7BH24|V7BH24_PHAVU ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi5g1v0243900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55247763..55252169) extracted from Lotus japonicus Gifu genome v1.2.
GCAAGGGTAGATAGTATAACCGTATAGAGTCGTATACAGCAGCTTCACGAAAAGATATTGGGAAATCGAAGAACCAGTGA GTTCACTGTCAACAAGTTTCGCCTCAACACTCCACTCACTCTTTCTTCTTCTTCTTCTTCATCTTCTTGTGCCGTTCAAT CCACAATAAACGAAGCTTAGAGATACACATAGATAGATAGATACAGATAGCTTCTTCACCTTCATTAACAATGGCACATA CATCGCTTTTCACACCCACTTCCTCTCTTACATTTCTTCCCTCCCTTCCCTCTTCTTCTTCTTCTTCGCGCTCCGTCAAC CTTTCTTTGCCCTCTCACTCTTTTCTCTCCGGGTATGTGTTTTTTTTAATCAAATTTGGTAATTTCGTGTATGATATGAA TACCCCCAACCCCATTTGCGTAAGCGTTTATTTTGAGTAATTGAATTCGAATTTGTTGTAAAGTTTGCATTTTGAGGGGT TTCAATTTGTGGGTGTTGTTGGGTTCTGTTGTTTGCTTGTTCTAGAGCAATTAGGTCATAGGTTTTGTAGAAATTGACCC TAATATTTTCTGCTAGTGGGGTAACTGGATAAGGGTGAAGTGAAACTGAAGGATTTTTTGGGGGTTTGTATTGAACTGGG AAACTAGGTTAGCAAAATTTCATTGGGAATTTGAGGTTTCTTACTTCTTATAATATGTTTATTCTAGGGTGTTCTGTGAA GGCTCTTTAAAATTCTGCTAGTGACAGGTTGAATTGTATTTTCCACTCTTTGCTTCTGCTTAAAAATTTTCTCTTTTTTT TTATGGCAATTGATGTTCTTTGTTGTATTGGATATTTATTTTTATCAAGGGGGTGAAGCCTTGCTGTGATTTGCAGGAAA TTAAGGAAATCGGCAGAAAGTAAGGTTACTAAAAAATCTCCGGTGAAAGCGGTGTATGGCGATGAATTTTGGACACCTGA GAGGAGTTCAACTCAGGGTATTTGGTCCATGAGGTAGATTTTATTTTGTTATTTGTTTTATCATTTAGCTTTGTTGGTTA GGAATAGATTTTTAGGTGCCAACAAGCTTATTCTTATTTATCTGACTTGGGTTTTCTTTAAGGAATGATTTGCAAGTCCC ATCTTCCCCTTATTTTCCTGCTTATGCACAAGGACAAGGGCCACCCCCAATGGTGCAGGAGCGATTCATGAGTGTTATAA GTCAGCTTTTCCAATATGTAGGCATTTTTTACTCTTGCTGTTACTTAAGGTTGAGCATTCAGCTTGTTTTTATCTTTCAA GTGTTGATAATGTGTTTTGGTATTTAGAGAATCATCCGTTGTGGTGGAGCAGTTGATGATGATATGGCAAACATCATAGT TGCTCAGCTCCTTTACCTCGATGCTGTTGATCCTAACAAGGTGTGTTCAAACTCATGACTTCTCTTATATGTTTGTCTAT ATGAAGTGATCCTTTGCATTCCTGGACATGTCTTCAAATGCTTATATTGCTGTATTTTTTTCACTATGTTATGATTATTG TCTTGAATTTGTCTTTAATCTTTTCAACTGTGTTAAACTAAAAAATTGTTGTGACTGCCACTTTTCTGATTTTGTTGAAC AGGATATTGTCATGTATGTAAATTCTCCAGGAGGATCGGTTACAGCTGGTAAGATTTTTTTTATGTATCTATCTTGAATT ATTTTTATTACATACAACCTGCACTAGGACTCAAAAAAAATATTATTCTTTTTTAAAATGTGTTTTTTATTATTTTTTCA TAGGTATGGCAATATTCGATACAATGAGGCATATCCGACCTGATGTGTCCACTGTTTGTGTTGGATTAGCGGCTAGGTAA TGCTTCATCTTGCTCTTGATAACACCTAAATGCTGACAAGTTGCTATCAGTAAAAGGCTAAAGTTTTTTTCCTAACATGA TCTTGATGTATGCTCACAGAAAGTTCATTCATTTATTTTTGCTGAATTCTAGGAGAATTAAGATGATTAAGTATTAATTA ATTTTAGACCCTCCCTTTGACACAGTACTTTTTCTCTTAAATGAATTTTTTTTGGGTATGATTACATTTCTGTGAATGAT GTGCTACATCCATGGGTTACCGCTGACTTCAGGAATAGCCAAATGTGAATCTAGAGAACAAATTGGTCCCCTCTTATCTT AACTGCTGTAGTTCATTTTAGAAAATCTTCTCCACTGGTAATTGTCATGTTGTGGACAATATCGTTTTTTCCAGTTTCAT GTTGGTCCCTAGATAGCATTGCAGAAGTAATGTAAGGACTGTTGACTGTAATATTAACTAAGAACTTTTGAACTAAAAAC TTGGTAGCTTCTTAGGCTATGCCTTTTCATGCTCTGGATTTGAGTTCCACCTTTGACCTGGTAGTCCGGCACTTCTCAAC AGCTAAACTAAAGTCAGAGACTGTATTTTCAGAGATACCATTATTAAAAATTTGAGATAGAATTTGCACTTGTGACATTT GCTGATGATATATGCATTGAACAGTTTGAAGAACTTAAAATCTCCAATTCTCCATTAATTCACAATATGACACTGAAAGA TGATTAATTTGTATGCTAGTTTCTTTTAAAAAAAAATTGTTGAAGAAATTATGTTTCACATTCATACTTACAAAGACCTT TTCATGAGCAGTATGGGAGCTTTTTTGCTTAGCGCAGGGACCAAAGGTAATGATGATTCCTTAAACTTGCAGTCACTATC CATTTTTTTTTTCTCTTTTCTTTCTTTCTTCTTTTGGCGAATGTCATTTTCCACTTTTCTGAAAAAGAAATTCTTCTTTC TAACTCTATATCCCCACTACCTCACTTCTGAAGGTAAGAGATACAGCTTGCCAAACTCAAGGATTATGATCCATCAACCG CTTGGTGGTGCTCAAGGAGGGCAAACTGACATAGATATTCAGGTTTAGGTTCCCTTTTTCTCCCTTTTGTTCTTGTTTAC TTTGAAAAAATTATATTCTTTTATCATAGAAAATTAAAACCTGTCATCGGATATTACTCAGTCCAATAAATTGATTTAAA CCAAGAAGATGGTAAATTCCCTGATAACCTAAATCTATGAATAAAATATCTCTAGCAATTTCCTTATATTCCTTTGTTTT GTCCTTTTTATATTTCATTTTCTATTATTATGTGTTGGGCTTTGGTTTGTTTTTGTCTGGATTTGATCAGATATTTTCAG TTAGTTGATTTTGAACCCCATTATAATGGGTGATAATTTCTCTATGGACAAGTATCATAAATTTGTGATTCTCTTCGTAA CCCTGTTACAGAAAATTAATTATGGTTTGTAATCCTTAGGCAAATGAAATGCTGCATCATAAGGCAAACCTGAATGGATA TCTGTCCTATCATACTGGCCAAAGCTTAGAGAAGATTAACCAGGACACAGACCGTGATTTTTTCATGAGCGCAAAAGAAG CCAAAGAATATGGACTCATAGATGGTGTCATTATGAATCCTCTCAAAGCTCTCCAGCCATTGCCGGCTGCAGAGGAGGGA AAAGATCGGGCTGTTGTTTGAACCTGTGATTGTTGCACTCTAATTTCCAAGGTATAGAAAAACAAGAATGATGTTTTTGG TTTCTGAGTCCAATTGAGTTATCTGTACAACCCTGTACCGAAATATTAGGTAAAAATGTTACTTCTTGAGTATTTCCTTT ATGCCGATAGAAGCTTCCTTAATGGACCCTGGATGTGTTTCTTCCCCTTAATTCATTCTATTGTGATAAGTGGTAACTGA TATGTCCTCGCATCTTTGGTATTAGATTATTTCTGTTTTTCCTTTGATTTGTGATTGCTATGCATGTATATGGATTAGCA TTAAAAGTAGGGTCATTGGTGTTACAAGAACAGTGAGGTAATTTTGAATAGGGGGAATCCATACACAATTGTAATTCATA AGATTTCATCTTAATAAGTGATTGACAATCCATCAGTCATTGATTAAAAAGTAATTATATCCAATGATTTATTTTGCTGC TTCAACAATAAATCACAGATATGTCGCTTTATTTTAGTTGCAAATAAGAATGCTAATTGGTATGGTACTATAGTACTCGT CTCCATATCTTCATTTTTTAAATATACTTGTACATGTCCTGTGGATAGCAACTTTAGTACTCATACCCTAATTATTGGGT ACTAATAAACCAGGACTTAAGTTCATTACTCGCAAATCACTTTAATATTGTATCTAGGTAATGTGTTTGTGTTGGCTATA GAAAATTGGAAGAATGAATCAGTCGGAAGCTCAGGGCTCAATTGTTAATTAGTTAATCGAATCTTGCCGGATTAGCTTGT TAGATAAATAACGAATGATCGATTAGCTGATTTGATTTTAAAGTCAGTTTGTTTCCAAGGAAAACTTGGATTCTCTCATT CCAAGGT
CDS sequence (LotjaGi5g1v0243900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACATACATCGCTTTTCACACCCACTTCCTCTCTTACATTTCTTCCCTCCCTTCCCTCTTCTTCTTCTTCTTCGCG CTCCGTCAACCTTTCTTTGCCCTCTCACTCTTTTCTCTCCGGGAAATTAAGGAAATCGGCAGAAAGTAAGGTTACTAAAA AATCTCCGGTGAAAGCGGTGTATGGCGATGAATTTTGGACACCTGAGAGGAGTTCAACTCAGGGTATTTGGTCCATGAGG AATGATTTGCAAGTCCCATCTTCCCCTTATTTTCCTGCTTATGCACAAGGACAAGGGCCACCCCCAATGGTGCAGGAGCG ATTCATGAGTGTTATAAGTCAGCTTTTCCAATATAGAATCATCCGTTGTGGTGGAGCAGTTGATGATGATATGGCAAACA TCATAGTTGCTCAGCTCCTTTACCTCGATGCTGTTGATCCTAACAAGGATATTGTCATGTATGTAAATTCTCCAGGAGGA TCGGTTACAGCTGGTATGGCAATATTCGATACAATGAGGCATATCCGACCTGATGTGTCCACTGTTTGTGTTGGATTAGC GGCTAGTATGGGAGCTTTTTTGCTTAGCGCAGGGACCAAAGGTAAGAGATACAGCTTGCCAAACTCAAGGATTATGATCC ATCAACCGCTTGGTGGTGCTCAAGGAGGGCAAACTGACATAGATATTCAGGCAAATGAAATGCTGCATCATAAGGCAAAC CTGAATGGATATCTGTCCTATCATACTGGCCAAAGCTTAGAGAAGATTAACCAGGACACAGACCGTGATTTTTTCATGAG CGCAAAAGAAGCCAAAGAATATGGACTCATAGATGGTGTCATTATGAATCCTCTCAAAGCTCTCCAGCCATTGCCGGCTG CAGAGGAGGGAAAAGATCGGGCTGTTGTTTGA
Protein sequence (LotjaGi5g1v0243900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAHTSLFTPTSSLTFLPSLPSSSSSSRSVNLSLPSHSFLSGKLRKSAESKVTKKSPVKAVYGDEFWTPERSSTQGIWSMR NDLQVPSSPYFPAYAQGQGPPPMVQERFMSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIVMYVNSPGG SVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKAN LNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPLKALQPLPAAEEGKDRAVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| PANTHER | 1 | 297 | 297 | 3.0E-155 | ||
| PANTHER | 1 | 297 | 297 | 3.0E-155 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| Phobius | 17 | 25 | 9 | - | – | |
| Phobius | 26 | 303 | 278 | - | – | |
| Hamap | 87 | 284 | 198 | 39.402 | ||
| Gene3D | 95 | 284 | 190 | 6.6E-70 | – | |
| SUPERFAMILY | 105 | 281 | 177 | 5.27E-66 | ||
| Pfam | 105 | 283 | 179 | 3.3E-80 | ||
| PRINTS | 110 | 125 | 16 | 1.4E-47 | ||
| CDD | 111 | 280 | 170 | 1.21311E-108 | ||
| PRINTS | 150 | 170 | 21 | 1.4E-47 | ||
| ProSitePatterns | 181 | 192 | 12 | - | ||
| PRINTS | 181 | 198 | 18 | 1.4E-47 | ||
| PRINTS | 202 | 221 | 20 | 1.4E-47 | ||
| ProSitePatterns | 203 | 216 | 14 | - | ||
| PRINTS | 259 | 278 | 20 | 1.4E-47 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi5g1v0243900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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