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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0162200 |
| Transcript ID | LotjaGi6g1v0162200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein l7ae; TAIR: AT5G20160.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q5XH16|NH2L1_XENLA NHP2-like protein 1; TrEMBL-Plants: tr|I3T354|I3T354_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0162200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:44611050..44612896) extracted from Lotus japonicus Gifu genome v1.2.
GGTTGGTGTAATTTCCTATATTCATTAGGTCAAAATAATTGTGTTCTTTATATTTATATATAATATAATATAATATAATG TGACTGACTCTCCTTTTAAATTCACTCATTCGTCCATCTCCTCCACTCCACTCCACCAAGCAAAACCCTAATTTCAATCT CAGTAGCCGCCACTTTTCCTTCAACAACAATGGTAATGGTTGGTACCTGATTCTCTTCGATCTGTTCTGTTCTGTTCTGT TCTTCTCTGATTCTCTCTTTGATTCCTTTTGCAGACTGGAGAAACAGTGAACCCGAAAGCTTACCCTCTGGCTGATGCTC AGCTCACGATAACCATCATGGATCTCGTTCAACAAGCTTCCAACTACAAGCAGCTCAAAAAGGGTGCCAATGAAGGTATG TCATTAGCTTCTGTTAGGGTTTTGTTTGTTTGGTTGATTGGTGCAATGGTGCTCATGTTTTCTGTTTTTGTTTGTTTGTT TCAGCTACCAAGACATTGAACAGAGGAATTTCTGAGTTCGTTGTTATGGCCGCGGATGCTGAGCCTCTTGAGATTCTTCT CCATCTTCCTCTACTTGCTGAGGATAAGGTACTGTATTTTGCTTACTCTTTATTCTGCTTGTTGCAGAGATTCAATTTTT GTAGAATATTAAGAATGGGTCCTGTCTGTGTAACTATGTTTATGAAGAATCAGTTCATTGTCATGAGTTACAGGAAAAGG GGTAGTGTAGGAATTATCTCATGCTGTTGCTTGGGATTTCTGTAGAACTATTTTAATAGCTGAGTGTATGTTTGGAAATT TTTGTTCAATTGATTTTATTTAAGGTTGATAGCATGTTTGGGTCAGTTTATTTTCCTGCAGAATTAATTCTGGCACCTAG AAACTACTCATTAAATGTTGGGATTAACTTCTCTAAGTAGTTTTTGAGGTGTTAGAAATGATTTTAAGGAGGAATGTTCA AGGGAAGATGCGATAACATGATAATGCTTACACACTTTGTGAACTTTGGAAGCTTATGGACTATTAATATCTGTAACTGT GAACTAATCTGTGCAAGGACATTTCAACTTGGAAATTTTACCTCTGTTCAGATTGGAGAATTTTTTGTCTGAAGATTCTG AACTACTACACGACCTTTTGTCTTTTGAATTCTATGATGTTTGTGGAAATTTCAATATATATTTCCAGTGAAGTGACCAT GCAATTTGAATTTTCAGAATGTTCCCTATGTGTTTGTCCCTTCAAAACAAGCACTTGGGCGAGCATGTGGGGTAACCCGG CCAGTGATTGCATGTTCTGTGACAACAAATGAGGGAAGCCAATTGAAATCTCAAATACAGCAACTCAAGGTATGCACAAT GCTTTGCTTATATGATATCCAAACAGTTGGCAACTATTTTAGTTCTATCATGTTATATTGAATAAACGTTGCTTCTGTTT GCAGGATGCTATTGAGAAGCTGTTAATCTGAGAAATTATAGTCGGCGTGATGGGCTTCTGAGTGCTTCTTCAGAGGCTTT GACTGGACAACAAGTTGTGTTGTGTTTTATTTGTAAACTTGAGCTTTACTTCTAAAGATTGTGAATTAGTGAAGTTTTAG ACCACTATTTTGAATTTGTTTAATGTTATTTTTGTGAGTTCTATTAGTAAGTTCAAACTACCTGAGTAATTTCCTCGTTT TCTTTTGATAAATCTGATATACCTTGGCAAAGTAAGCGATAAGCACAATGCATGAAATGTTAGAATAGAACATATGAAAT ATATTCTGTTTAATATTTCTCAGTCATTCGAATTTAAGGGAAAGGAGGTGAAGTAATTTTACCTCCTATTAAAACATATA GATGGTC
CDS sequence (LotjaGi6g1v0162200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAATGACTGGAGAAACAGTGAACCCGAAAGCTTACCCTCTGGCTGATGCTCAGCTCACGATAACCATCATGGATCT CGTTCAACAAGCTTCCAACTACAAGCAGCTCAAAAAGGGTGCCAATGAAGCTACCAAGACATTGAACAGAGGAATTTCTG AGTTCGTTGTTATGGCCGCGGATGCTGAGCCTCTTGAGATTCTTCTCCATCTTCCTCTACTTGCTGAGGATAAGAATGTT CCCTATGTGTTTGTCCCTTCAAAACAAGCACTTGGGCGAGCATGTGGGGTAACCCGGCCAGTGATTGCATGTTCTGTGAC AACAAATGAGGGAAGCCAATTGAAATCTCAAATACAGCAACTCAAGGATGCTATTGAGAAGCTGTTAATCTGA
Protein sequence (LotjaGi6g1v0162200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVMTGETVNPKAYPLADAQLTITIMDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNV PYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 130 | 129 | 3.7E-56 | ||
| PANTHER | 3 | 130 | 128 | 1.0E-84 | – | |
| PANTHER | 3 | 130 | 128 | 1.0E-84 | – | |
| SUPERFAMILY | 8 | 128 | 121 | 1.24E-35 | ||
| PRINTS | 10 | 23 | 14 | 3.1E-27 | ||
| PRINTS | 23 | 38 | 16 | 3.1E-27 | ||
| Pfam | 24 | 113 | 90 | 7.4E-27 | ||
| PRINTS | 37 | 51 | 15 | 6.3E-20 | ||
| PRINTS | 40 | 50 | 11 | 3.1E-27 | ||
| PRINTS | 56 | 69 | 14 | 6.3E-20 | ||
| PRINTS | 72 | 82 | 11 | 6.3E-20 | ||
| ProSitePatterns | 75 | 92 | 18 | - | ||
| PRINTS | 82 | 96 | 15 | 6.3E-20 | ||
| PRINTS | 84 | 96 | 13 | 3.1E-27 | ||
| Coils | 111 | 130 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. | ||
| Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. | ||
| Cellular component | Ribonucleoprotein complex | A macromolecular complex containing both protein and RNA molecules. |
Expression pattern of LotjaGi6g1v0162200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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