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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011009
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 3629 results. Now displaying 15 of 73 with 50 rows per page. This search has taken 7.056s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v4579490.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Glycine max] gi|356505222|ref|XP_003521391.1| chr1 54629164 54633146 +
2 domain predictions
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Lj1g3v4591000.1
n.a. PREDICTED: probable receptor-like protein kinase At5g47070-like [Glycine max] gi|356572460|ref|XP_003554386.1| chr1 54902556 54906683 +
2 domain predictions
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Lj1g3v4691720.1
n.a. PREDICTED: wall-associated receptor kinase-like 20-like [Glycine max] gi|356570800|ref|XP_003553572.1| chr1 55638063 55640546 -
2 domain predictions
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Lj1g3v4693100.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400-like [Cicer arietinum] gi|502111675|ref|XP_004494131.1| chr1 55784172 55787477 -
2 domain predictions
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Lj1g3v4694300.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK5-like [Glycine max] gi|356509567|ref|XP_003523519.1| chr1 55827302 55829899 +
2 domain predictions
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Lj1g3v4695530.1
n.a. PREDICTED: serine/threonine-protein kinase CTR1-like [Glycine max] gi|356570819|ref|XP_003553581.1| chr1 55949435 55960753 +
2 domain predictions
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Lj1g3v4730400.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Cicer arietinum] gi|502112140|ref|XP_004494248.1| chr1 56652576 56656895 -
2 domain predictions
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Lj1g3v4752970.1
n.a. PREDICTED: calcium-dependent protein kinase 2-like [Glycine max] gi|356503866|ref|XP_003520722.1| chr1 56901933 56904900 +
2 domain predictions
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Lj1g3v4794000.1
n.a. PREDICTED: glycogen synthase kinase-3 homolog MsK-1-like isoform X4 [Cicer arietinum] gi|502116888|ref|XP_004495628.1| chr1 57795748 57800093 +
2 domain predictions
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Lj1g3v4804250.1
n.a. PREDICTED: probable receptor-like protein kinase At5g18500-like [Glycine max] gi|356505741|ref|XP_003521648.1| chr1 57869465 57873584 -
2 domain predictions
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Lj1g3v4806310.1
n.a. PREDICTED: serine/threonine-protein kinase haspin-like [Cicer arietinum] gi|502113021|ref|XP_004494517.1| chr1 57894098 57900141 +
2 domain predictions
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Lj1g3v4830460.1
n.a. serine/threonine protein kinase [Glycine max] gi|351725893|ref|NP_001237620.1| chr1 58422977 58426175 -
2 domain predictions
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Lj1g3v4831690.1
n.a. PREDICTED: serine/threonine-protein kinase CBK1-like [Glycine max] gi|356576521|ref|XP_003556379.1| chr1 58463377 58475977 -
2 domain predictions
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Lj1g3v4831730.1
n.a. PREDICTED: glycogen synthase kinase-3 homolog MsK-3-like [Cicer arietinum] gi|502112826|ref|XP_004494455.1| chr1 58487759 58490021 +
2 domain predictions
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Lj1g3v4831730.2
n.a. RecName: Full=Glycogen synthase kinase-3 homolog MsK-3] gi|11182434|sp|P51139.2|MSK3_MEDSA chr1 58487759 58491618 +
2 domain predictions
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Lj1g3v4849450.1
n.a. PREDICTED: receptor-like serine/threonine-protein kinase ALE2-like [Cicer arietinum] gi|502112746|ref|XP_004494430.1| chr1 58709231 58714134 +
2 domain predictions
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Lj1g3v4849450.2
n.a. PREDICTED: receptor-like serine/threonine-protein kinase ALE2-like [Cicer arietinum] gi|502112746|ref|XP_004494430.1| chr1 58712828 58714134 +
2 domain predictions
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Lj1g3v4913220.1
n.a. PREDICTED: wee1-like protein kinase-like [Cicer arietinum] gi|502112512|ref|XP_004494355.1| chr1 59458768 59462459 +
2 domain predictions
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Lj1g3v4931570.1
n.a. PREDICTED: mitogen-activated protein kinase kinase kinase ANP1-like [Cicer arietinum] gi|502113329|ref|XP_004494615.1| chr1 60012095 60017338 +
2 domain predictions
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Lj1g3v4955170.1
n.a. PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2-like [Glycine max] gi|356574920|ref|XP_003555591.1| chr1 60215276 60226258 +
2 domain predictions
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Lj1g3v4955170.2
n.a. PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2-like [Cicer arietinum] gi|502117253|ref|XP_004495756.1| chr1 60222360 60226258 +
2 domain predictions
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Lj1g3v4955340.1
n.a. PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like [Fragaria vesca subsp]. vesca] gi|470122218|ref|XP_004297142.1| chr1 60297288 60301102 -
2 domain predictions
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Lj1g3v4955340.4
n.a. PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like [Fragaria vesca subsp]. vesca] gi|470122218|ref|XP_004297142.1| chr1 60297554 60304815 -
2 domain predictions
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Lj1g3v4955420.1
n.a. PREDICTED: probable serine/threonine-protein kinase At1g54610-like [Glycine max] gi|356505916|ref|XP_003521735.1| chr1 60344790 60349542 -
2 domain predictions
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Lj1g3v4957780.1
n.a. PREDICTED: serine/threonine-protein kinase WNK1-like [Glycine max] gi|356535149|ref|XP_003536111.1| chr1 60493234 60495971 -
2 domain predictions
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Lj1g3v4996200.1
n.a. PREDICTED: receptor-like protein kinase ANXUR2-like [Cicer arietinum] gi|502113633|ref|XP_004494710.1| chr1 60679629 60682812 -
2 domain predictions
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Lj1g3v5010640.1
n.a. PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Glycine max] gi|356546735|ref|XP_003541778.1| chr1 60901967 60904367 +
2 domain predictions
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Lj1g3v5021110.1
n.a. Protein kinase-like protein [Medicago truncatula] gi|357512441|ref|XP_003626509.1| chr1 61228559 61231987 -
2 domain predictions
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Lj1g3v5034840.1
n.a. Ubiquitin [Medicago truncatula] gi|358349317|ref|XP_003638685.1| chr1 61553415 61556597 +
2 domain predictions
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Lj1g3v5060350.1
n.a. PREDICTED: CDPK-related kinase 3-like [Cicer arietinum] gi|502114076|ref|XP_004494853.1| chr1 61753811 61782884 -
2 domain predictions
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Lj1g3v5061090.1
n.a. PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Glycine max] gi|356504209|ref|XP_003520891.1| chr1 62032093 62033579 +
2 domain predictions
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Lj1g3v5061290.1
n.a. PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Cicer arietinum] gi|502114195|ref|XP_004494892.1| chr1 62069830 62077683 +
2 domain predictions
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Lj2g3v0025920.1
n.a. PREDICTED: calcium-dependent protein kinase 10-like [Glycine max] gi|356507178|ref|XP_003522347.1| chr2 534940 538670 -
2 domain predictions
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Lj2g3v0029010.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK7-like [Fragaria vesca subsp]. vesca] gi|470130186|ref|XP_004300986.1| chr2 577748 578500 -
2 domain predictions
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Lj2g3v0265410.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK7-like [Fragaria vesca subsp]. vesca] gi|470130186|ref|XP_004300986.1| chr2 4545106 4545843 -
2 domain predictions
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Lj2g3v0322770.1
n.a. PREDICTED: probable receptor-like protein kinase At5g24010-like, partial [Cicer arietinum] gi|502120055|ref|XP_004496832.1| chr2 5389361 5392675 -
2 domain predictions
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Lj2g3v0343910.1
n.a. PREDICTED: protein kinase wis1-like [Cicer arietinum] gi|502119215|ref|XP_004496542.1| chr2 5501835 5510375 +
2 domain predictions
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Lj2g3v0346240.1
n.a. PREDICTED: U-box domain-containing protein 32-like [Cicer arietinum] gi|502119238|ref|XP_004496550.1| chr2 5656521 5664827 -
2 domain predictions
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Lj2g3v0473820.1
n.a. PREDICTED: receptor-like serine/threonine-protein kinase At2g45590-like [Cicer arietinum] gi|502146090|ref|XP_004506300.1| chr2 6685241 6689424 +
2 domain predictions
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Lj2g3v0561100.1
n.a. Nodulation receptor kinase [Medicago truncatula] gi|357499011|ref|XP_003619794.1| chr2 7443803 7447081 -
2 domain predictions
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Lj2g3v0561100.2
n.a. Nodulation receptor kinase [Medicago truncatula] gi|357499011|ref|XP_003619794.1| chr2 7443803 7447081 -
2 domain predictions
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Lj2g3v0561190.1
n.a. PREDICTED: receptor-like protein kinase HSL1-like [Glycine max] gi|356561798|ref|XP_003549165.1| chr2 7495060 7498988 +
2 domain predictions
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Lj2g3v0633850.1
n.a. Os03g0719500 [Oryza sativa Japonica Group] gi|115454989|ref|NP_001051095.1| chr2 9425864 9432958 +
2 domain predictions
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Lj2g3v0636980.1
n.a. PREDICTED: serine/threonine-protein kinase CTR1-like [Glycine max] gi|356510128|ref|XP_003523792.1| chr2 10431793 10432976 -
2 domain predictions
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Lj2g3v0648070.1
n.a. PREDICTED: mitogen-activated protein kinase kinase 4-like [Glycine max] gi|356531126|ref|XP_003534129.1| chr2 10452515 10453998 +
2 domain predictions
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Lj2g3v0663780.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Glycine max] gi|356555135|ref|XP_003545892.1| chr2 10782437 10784008 -
2 domain predictions
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Lj2g3v0677950.1
n.a. PREDICTED: serine/threonine-protein kinase EDR1-like [Cicer arietinum] gi|502138403|ref|XP_004503393.1| chr2 10848581 10857424 -
2 domain predictions
 –
Lj2g3v0690050.1
n.a. PREDICTED: mitogen-activated protein kinase 9-like isoform X1 [Cicer arietinum] gi|502138122|ref|XP_004503294.1| chr2 10901393 10905680 +
2 domain predictions
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Lj2g3v0691460.1
n.a. CDK-activating kinase [Medicago sativa subsp]. x varia] gi|15419985|gb|AAK97227.1|AF302013_1 chr2 11018097 11024026 -
2 domain predictions
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Lj2g3v0716020.1
n.a. PREDICTED: probable serine/threonine-protein kinase At1g18390-like isoform X2 [Cicer arietinum] gi|502163637|ref|XP_004512900.1| chr2 11350591 11354059 +
2 domain predictions
 –