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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011990
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 1969 results. Now displaying 40 of 40 with 50 rows per page. This search has taken 6.865s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi6g1v0330500.1
n.a. Telomerase activating protein Est1; TAIR: AT1G28260.1 Telomerase activating protein Est1; Swiss-Prot: sp|Q9FZ99|SMG7L_ARATH Protein SMG7L; TrEMBL-Plants: tr|I1M225|I1M225_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0330500 LjG1.1_chr6 64584007 64590150 -
3 domain predictions
1 GO term
LotjaGi6g1v0333000.1
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT4G21705.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705, mitochondrial; TrEMBL-Plants: tr|A0A1J7HLM6|A0A1J7HLM6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0333000 LjG1.1_chr6 64777659 64781723 +
3 domain predictions
1 GO term
LotjaGi6g1v0338100.1
n.a. Pre-mRNA-splicing factor SYF1; TAIR: AT5G28740.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9HCS7|SYF1_HUMAN Pre-mRNA-splicing factor SYF1; TrEMBL-Plants: tr|K7M1P8|K7M1P8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0338100 LjG1.1_chr6 65248687 65254311 -
3 domain predictions
1 GO term
LotjaGi6g1v0344100.1
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G13150.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150; TrEMBL-Plants: tr|F6I7G2|F6I7G2_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0344100 LjG1.1_chr6 65674432 65676354 +
2 domain predictions
1 GO term
LotjaGi6g1v0348400.1
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT4G31070.1 PPR superfamily protein; Swiss-Prot: sp|O65543|PP343_ARATH Pentatricopeptide repeat-containing protein At4g31070, mitochondrial; TrEMBL-Plants: tr|I1ME15|I1ME15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0348400 LjG1.1_chr6 66123677 66126189 -
2 domain predictions
1 GO term
LotjaGi6g1v0350300.1
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G09450.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450, mitochondrial; TrEMBL-Plants: tr|I3RZT1|I3RZT1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0350300 LjG1.1_chr6 66244681 66247387 -
2 domain predictions
1 GO term
LotjaGi6g1v0350300.2
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G09450.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450, mitochondrial; TrEMBL-Plants: tr|I3RZT1|I3RZT1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0350300 LjG1.1_chr6 66245224 66247083 -
2 domain predictions
1 GO term
LotjaGi6g1v0352400.1
n.a. Glutamyl-tRNA(Gln) amidotransferase subunit A; TAIR: AT5G09420.1 translocon at the outer membrane of chloroplasts 64-V; Swiss-Prot: sp|F4KCL7|OE64M_ARATH Outer envelope protein 64, mitochondrial; TrEMBL-Plants: tr|I1KUC8|I1KUC8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0352400 LjG1.1_chr6 66448544 66454373 -
3 domain predictions
1 GO term
LotjaGi6g1v0360200.1
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G10910.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q0WVV0|PPR31_ARATH Pentatricopeptide repeat-containing protein At1g10910, chloroplastic; TrEMBL-Plants: tr|I1KUM0|I1KUM0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0360200 LjG1.1_chr6 67159031 67170594 +
2 domain predictions
1 GO term
LotjaGi6g1v0360200.2
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G10910.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q0WVV0|PPR31_ARATH Pentatricopeptide repeat-containing protein At1g10910, chloroplastic; TrEMBL-Plants: tr|A0A0L9VGM8|A0A0L9VGM8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0360200 LjG1.1_chr6 67159040 67163808 +
2 domain predictions
1 GO term
LotjaGi6g1v0362600_LC.1
n.a. Pentatricopeptide repeat superfamily protein; TAIR: AT2G25580.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q680H3|PP170_ARATH Pentatricopeptide repeat-containing protein At2g25580; TrEMBL-Plants: tr|K7KQF6|K7KQF6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0362600_LC LjG1.1_chr6 67438363 67438833 -
2 domain predictions
1 GO term
LotjaGi6g1v0363900.1
n.a. Pentatricopeptide repeat-containing protein; TAIR: AT1G26900.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900, mitochondrial; TrEMBL-Plants: tr|G7IPV3|G7IPV3_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi6g1v0363900 LjG1.1_chr6 67542215 67548757 -
2 domain predictions
1 GO term
LotjaGi6g1v0363900.2
n.a. Pentatricopeptide repeat-containing protein; TAIR: AT1G26900.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900, mitochondrial; TrEMBL-Plants: tr|G7IPV3|G7IPV3_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi6g1v0363900 LjG1.1_chr6 67542215 67548757 -
2 domain predictions
1 GO term
LotjaGi6g1v0363900.3
n.a. Pentatricopeptide repeat-containing protein; TAIR: AT1G26900.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900, mitochondrial; TrEMBL-Plants: tr|G7IPV3|G7IPV3_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi6g1v0363900 LjG1.1_chr6 67542649 67548639 -
2 domain predictions
1 GO term
LotjaGi6g1v0363900.4
n.a. Pentatricopeptide repeat-containing protein; TAIR: AT1G26900.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900, mitochondrial; TrEMBL-Plants: tr|G7IPV3|G7IPV3_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi6g1v0363900 LjG1.1_chr6 67542731 67547626 -
2 domain predictions
1 GO term
LotjaGi6g1v0363900.5
n.a. Pentatricopeptide repeat-containing protein; TAIR: AT1G26900.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900, mitochondrial; TrEMBL-Plants: tr|G7IPV3|G7IPV3_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi6g1v0363900 LjG1.1_chr6 67542731 67548884 -
2 domain predictions
1 GO term
LotjaGi6g1v0366000_LC.1
n.a. Pentatricopeptide repeat-containing protein family; TAIR: AT1G10270.1 glutamine-rich protein 23; Swiss-Prot: sp|Q9SY69|PPR29_ARATH Pentatricopeptide repeat-containing protein At1g10270; TrEMBL-Plants: tr|K7LVA6|K7LVA6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0366000_LC LjG1.1_chr6 67842034 67853702 -
3 domain predictions
1 GO term
LotjaGi6g1v0366000_LC.2
n.a. Found in the gene: LotjaGi6g1v0366000_LC LjG1.1_chr6 67842034 67853702 -
3 domain predictions
1 GO term
LotjaGi6g1v0366000_LC.3
n.a. Found in the gene: LotjaGi6g1v0366000_LC LjG1.1_chr6 67842037 67853696 -
3 domain predictions
1 GO term