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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR012334
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 423 results. Now displaying 2 of 9 with 50 rows per page. This search has taken 6.034s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0289939.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Cicer arietinum] gi|502174447|ref|XP_004515520.1| chr0 150535774 150536806 +
2 domain predictions
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Lj0g3v0293729.1
n.a. Pectate lyase [Medicago truncatula] gi|358348969|ref|XP_003638513.1| chr0 152547943 152551355 +
2 domain predictions
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Lj0g3v0297449.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 36-like [Glycine max] gi|356571439|ref|XP_003553884.1| chr0 154625628 154628401 +
2 domain predictions
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Lj0g3v0305269.1
n.a. PREDICTED: pectinesterase 1-like [Cicer arietinum] gi|502164716|ref|XP_004513231.1| chr0 159118005 159119546 -
2 domain predictions
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Lj0g3v0306419.1
n.a. Nod-factor receptor 1a [Lotus japonicus] gi|37651058|emb|CAE02589.1| chr0 159887656 159890624 +
2 domain predictions
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Lj0g3v0307509.1
n.a. PREDICTED: polygalacturonase-like [Cicer arietinum] gi|502086987|ref|XP_004488391.1| chr0 160517974 160519169 +
2 domain predictions
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Lj0g3v0314639.1
n.a. PREDICTED: probable polygalacturonase At1g80170-like [Glycine max] gi|356565972|ref|XP_003551209.1| chr0 164243588 164249885 +
2 domain predictions
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Lj0g3v0320499.1
n.a. PREDICTED: probable pectinesterase 29-like [Glycine max] gi|356502398|ref|XP_003520006.1| chr0 167261317 167266941 -
2 domain predictions
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Lj0g3v0320539.1
n.a. PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Glycine max] gi|356532845|ref|XP_003534980.1| chr0 167289961 167290824 +
2 domain predictions
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Lj0g3v0320549.1
n.a. PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Cicer arietinum] gi|502150638|ref|XP_004508051.1| chr0 167291197 167291466 +
2 domain predictions
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Lj0g3v0320559.1
n.a. PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Glycine max] gi|356532845|ref|XP_003534980.1| chr0 167291968 167292468 +
2 domain predictions
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Lj0g3v0321959.1
n.a. PREDICTED: probable polygalacturonase-like [Glycine max] gi|356530824|ref|XP_003533980.1| chr0 168095215 168096375 -
2 domain predictions
 –
Lj0g3v0330299.1
n.a. Pectinesterase [Medicago truncatula] gi|357511717|ref|XP_003626147.1| chr0 172632243 172634504 +
2 domain predictions
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Lj0g3v0330629.1
n.a. truncated PGN [Glycine max] gi|62910161|gb|AAY21051.1| chr0 172812041 172812294 +
2 domain predictions
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Lj0g3v0341879.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Cicer arietinum] gi|502117077|ref|XP_004495691.1| chr0 179213832 179215566 -
2 domain predictions
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Lj0g3v0341889.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] gi|356533561|ref|XP_003535331.1| chr0 179215939 179219502 -
2 domain predictions
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Lj0g3v0354459.1
n.a. PREDICTED: polygalacturonase-like [Glycine max] gi|356528552|ref|XP_003532865.1| chr0 186683933 186685057 +
2 domain predictions
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Lj0g3v0356619.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Cicer arietinum] gi|502117077|ref|XP_004495691.1| chr0 187834488 187834977 +
2 domain predictions
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Lj1g3v0246840.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 12-like [Glycine max] gi|356556434|ref|XP_003546531.1| chr1 2536898 2539505 -
2 domain predictions
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Lj1g3v0589910.1
n.a. PREDICTED: polygalacturonase-like [Cicer arietinum] gi|502086987|ref|XP_004488391.1| chr1 7447240 7448488 -
2 domain predictions
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Lj1g3v0589920.1
n.a. PREDICTED: polygalacturonase-like [Cicer arietinum] gi|502086987|ref|XP_004488391.1| chr1 7460915 7462163 +
2 domain predictions
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Lj1g3v0984180.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 34-like [Cicer arietinum] gi|502136316|ref|XP_004502642.1| chr1 12430288 12432990 +
2 domain predictions
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Lj1g3v0984420.1
n.a. PREDICTED: pectinesterase QRT1-like [Glycine max] gi|356552622|ref|XP_003544663.1| chr1 12517973 12520246 +
2 domain predictions
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Lj1g3v1135190.1
n.a. Polygalacturonase [Medicago truncatula] gi|357487387|ref|XP_003613981.1| chr1 14091364 14099770 +
2 domain predictions
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Lj1g3v1135190.2
n.a. Polygalacturonase [Medicago truncatula] gi|357487387|ref|XP_003613981.1| chr1 14091364 14099770 +
2 domain predictions
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Lj1g3v1300570.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 51-like [Cicer arietinum] gi|502136975|ref|XP_004502918.1| chr1 15473051 15485194 +
2 domain predictions
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Lj1g3v1317020.1
n.a. PREDICTED: probable polygalacturonase-like [Glycine max] gi|356516364|ref|XP_003526865.1| chr1 15854412 15858770 -
2 domain predictions
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Lj1g3v1858470.1
n.a. PREDICTED: probable pectinesterase 8-like [Cicer arietinum] gi|502109080|ref|XP_004493561.1| chr1 22508528 22512858 +
2 domain predictions
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Lj1g3v2741280.1
n.a. PREDICTED: probable polygalacturonase-like [Glycine max] gi|356568425|ref|XP_003552411.1| chr1 31529346 31544154 +
2 domain predictions
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Lj1g3v2741280.2
n.a. PREDICTED: probable polygalacturonase-like [Glycine max] gi|356568425|ref|XP_003552411.1| chr1 31529346 31544866 +
2 domain predictions
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Lj1g3v2741280.3
n.a. Polygalacturonase [Medicago truncatula] gi|357507519|ref|XP_003624048.1| chr1 31533002 31544866 +
2 domain predictions
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Lj1g3v2952410.1
n.a. n.a. chr1 33467724 33473850 -
2 domain predictions
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Lj1g3v3438940.1
n.a. pectin methylesterase [Sesbania rostrata] gi|20269071|emb|CAD29733.1| chr1 39532293 39536751 +
2 domain predictions
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Lj1g3v3439090.1
n.a. pectinmethylesterase [Vigna radiata var]. radiata] gi|1149556|emb|CAA64217.1| chr1 39559174 39559531 +
2 domain predictions
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Lj1g3v3476140.1
n.a. PREDICTED: probable pectate lyase 8-like [Cicer arietinum] gi|502174836|ref|XP_004515610.1| chr1 40355349 40361777 +
2 domain predictions
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Lj1g3v3918190.1
n.a. PGN [Glycine max] gi|62910157|gb|AAY21049.1| chr1 45792056 45794278 +
2 domain predictions
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Lj1g3v3948080.1
n.a. Polygalacturonase [Medicago truncatula] gi|357450939|ref|XP_003595746.1| chr1 46240320 46243838 -
2 domain predictions
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Lj1g3v3960340.1
n.a. PREDICTED: polygalacturonase-like [Glycine max] gi|356508460|ref|XP_003522975.1| chr1 46387461 46388469 -
2 domain predictions
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Lj1g3v3960350.1
n.a. Polygalacturonase [Medicago truncatula] gi|357454641|ref|XP_003597601.1| chr1 46388596 46389693 -
2 domain predictions
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Lj1g3v3960360.1
n.a. Pectolytic enzyme, Pectin lyase fold [Medicago truncatula] gi|124360374|gb|ABN08387.1| chr1 46388596 46389693 -
2 domain predictions
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Lj1g3v4263350.1
n.a. PREDICTED: polygalacturonase-like [Glycine max] gi|356570487|ref|XP_003553417.1| chr1 50243611 50245433 -
2 domain predictions
 –
Lj1g3v4263350.2
n.a. PREDICTED: polygalacturonase-like [Glycine max] gi|356570487|ref|XP_003553417.1| chr1 50243611 50245433 -
2 domain predictions
 –
Lj1g3v4263360.1
n.a. PREDICTED: polygalacturonase-like [Glycine max] gi|356503450|ref|XP_003520521.1| chr1 50245565 50247033 -
2 domain predictions
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Lj1g3v4289090.1
n.a. PREDICTED: exo-poly-alpha-D-galacturonosidase-like [Cicer arietinum] gi|502109009|ref|XP_004493545.1| chr1 50555775 50559741 -
2 domain predictions
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Lj1g3v4616550.1
n.a. PREDICTED: probable pectate lyase 12-like [Cicer arietinum] gi|502111521|ref|XP_004494082.1| chr1 55176395 55179071 -
2 domain predictions
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Lj1g3v4830220.1
n.a. PREDICTED: probable polygalacturonase-like [Glycine max] gi|356572848|ref|XP_003554577.1| chr1 58314886 58318942 -
2 domain predictions
 –
Lj1g3v4830220.2
n.a. PREDICTED: probable polygalacturonase-like [Glycine max] gi|356572848|ref|XP_003554577.1| chr1 58314886 58318851 -
2 domain predictions
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Lj1g3v4830420.1
n.a. PREDICTED: pectinesterase 4-like [Cicer arietinum] gi|502112862|ref|XP_004494467.1| chr1 58405765 58407718 -
2 domain predictions
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Lj1g3v4831740.1
n.a. PREDICTED: polygalacturonase At1g48100-like [Glycine max] gi|356571013|ref|XP_003553676.1| chr1 58493687 58495482 +
2 domain predictions
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Lj1g3v4875690.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] gi|356572750|ref|XP_003554529.1| chr1 59195524 59197958 +
2 domain predictions
 –