Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016040
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 582 results. Now displaying 12 of 12 with 50 rows per page. This search has taken 5.912s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi4g1v0380000.3
n.a. NAD(P)-binding Rossmann-fold superfamily protein; TAIR: AT4G18810.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q94EG6|Y5224_ARATH Uncharacterized protein At5g02240; TrEMBL-Plants: tr|I3S9Y2|I3S9Y2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0380000 LjG1.1_chr4 75919889 75921598 -
2 domain predictions
 –
LotjaGi4g1v0380000.4
n.a. NAD(P)-binding Rossmann-fold superfamily protein; TAIR: AT4G18810.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|O14297|YF1F_SCHPO Uncharacterized protein C9E9.15; TrEMBL-Plants: tr|K7KQJ6|K7KQJ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0380000 LjG1.1_chr4 75919889 75924017 -
2 domain predictions
 –
LotjaGi4g1v0380000.5
n.a. NAD(P)-binding Rossmann-fold superfamily protein; TAIR: AT4G18810.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|O14297|YF1F_SCHPO Uncharacterized protein C9E9.15; TrEMBL-Plants: tr|K7KQJ6|K7KQJ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0380000 LjG1.1_chr4 75919889 75924515 -
2 domain predictions
 –
LotjaGi4g1v0389400.1
n.a. UDP-glucose 4-epimerase, putative; TAIR: AT1G30620.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1; TrEMBL-Plants: tr|K7L6B6|K7L6B6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0389400 LjG1.1_chr4 76772123 76778106 +
2 domain predictions
 –
LotjaGi4g1v0389400.2
n.a. UDP-glucose 4-epimerase, putative; TAIR: AT1G30620.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1; TrEMBL-Plants: tr|K7L6B6|K7L6B6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0389400 LjG1.1_chr4 76773419 76777569 +
2 domain predictions
 –
LotjaGi4g1v0389400.3
n.a. UDP-glucose 4-epimerase, putative; TAIR: AT1G30620.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1; TrEMBL-Plants: tr|G7L9K1|G7L9K1_MEDTR UDP-D-glucose/UDP-D-galactose 4-epimerase; Found in the gene: LotjaGi4g1v0389400 LjG1.1_chr4 76773434 76777569 +
2 domain predictions
 –
LotjaGi4g1v0389400.4
n.a. UDP-glucose 4-epimerase, putative; TAIR: AT1G30620.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1; TrEMBL-Plants: tr|A0A151R503|A0A151R503_CAJCA UDP-arabinose 4-epimerase 1; Found in the gene: LotjaGi4g1v0389400 LjG1.1_chr4 76773461 76777569 +
2 domain predictions
 –
LotjaGi4g1v0389400.5
n.a. UDP-glucose 4-epimerase, putative; TAIR: AT1G30620.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1; TrEMBL-Plants: tr|A0A151R503|A0A151R503_CAJCA UDP-arabinose 4-epimerase 1; Found in the gene: LotjaGi4g1v0389400 LjG1.1_chr4 76774408 76777578 +
2 domain predictions
 –
LotjaGi4g1v0389400.6
n.a. UDP-glucose 4-epimerase, putative; TAIR: AT1G30620.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1; TrEMBL-Plants: tr|A0A151R503|A0A151R503_CAJCA UDP-arabinose 4-epimerase 1; Found in the gene: LotjaGi4g1v0389400 LjG1.1_chr4 76775915 76777573 +
2 domain predictions
 –
LotjaGi4g1v0417600.1
n.a. UDP-glucose 4-epimerase; TAIR: AT1G12780.1 UDP-D-glucose/UDP-D-galactose 4-epimerase 1; Swiss-Prot: sp|B0M3E8|UGE1_PEA Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1; TrEMBL-Plants: tr|I3SSU7|I3SSU7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0417600 LjG1.1_chr4 79316727 79319999 +
2 domain predictions
 –
LotjaGi4g1v0435800.1
n.a. UDP-glucose 4-epimerase; TAIR: AT4G10960.1 UDP-D-glucose/UDP-D-galactose 4-epimerase 5; Swiss-Prot: sp|O65781|GALE2_CYATE UDP-glucose 4-epimerase GEPI48; TrEMBL-Plants: tr|A0A1J7FZR9|A0A1J7FZR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0435800 LjG1.1_chr4 80894963 80898288 +
2 domain predictions
 –
LotjaGi4g1v0435800.2
n.a. UDP-glucose 4-epimerase family protein; TAIR: AT4G10960.1 UDP-D-glucose/UDP-D-galactose 4-epimerase 5; Swiss-Prot: sp|O65781|GALE2_CYATE UDP-glucose 4-epimerase GEPI48; TrEMBL-Plants: tr|A0A1J7FZR9|A0A1J7FZR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0435800 LjG1.1_chr4 80894963 80898288 +
2 domain predictions
 –
LotjaGi4g1v0435800.3
n.a. UDP-glucose 4-epimerase family protein; TAIR: AT4G10960.1 UDP-D-glucose/UDP-D-galactose 4-epimerase 5; Swiss-Prot: sp|O65781|GALE2_CYATE UDP-glucose 4-epimerase GEPI48; TrEMBL-Plants: tr|A0A1J7FZR9|A0A1J7FZR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0435800 LjG1.1_chr4 80894976 80898788 +
2 domain predictions
 –
LotjaGi5g1v0066900.1
n.a. Udp-glucose 4,6-dehydratase; TAIR: AT1G78570.1 rhamnose biosynthesis 1; Swiss-Prot: sp|Q9SYM5|RHM1_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1; TrEMBL-Plants: tr|I1M9T9|I1M9T9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0066900 LjG1.1_chr5 11127103 11130659 -
2 domain predictions
 –
LotjaGi5g1v0066900.2
n.a. Udp-glucose 4,6-dehydratase; TAIR: AT1G78570.1 rhamnose biosynthesis 1; Swiss-Prot: sp|Q9SYM5|RHM1_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1; TrEMBL-Plants: tr|I1M9T9|I1M9T9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0066900 LjG1.1_chr5 11127383 11130058 -
2 domain predictions
 –
LotjaGi5g1v0070800.1
n.a. UDP-glucuronate decarboxylase protein 1; TAIR: AT3G53520.1 UDP-glucuronic acid decarboxylase 1; Swiss-Prot: sp|Q8VZC0|UXS1_ARATH UDP-glucuronic acid decarboxylase 1; TrEMBL-Plants: tr|I1L8M8|I1L8M8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0070800 LjG1.1_chr5 11674983 11678706 -
2 domain predictions
 –
LotjaGi5g1v0070800.2
n.a. UDP-glucuronate decarboxylase protein 1; TAIR: AT3G53520.1 UDP-glucuronic acid decarboxylase 1; Swiss-Prot: sp|Q8VZC0|UXS1_ARATH UDP-glucuronic acid decarboxylase 1; TrEMBL-Plants: tr|I1L8M8|I1L8M8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0070800 LjG1.1_chr5 11674983 11678712 -
2 domain predictions
 –
LotjaGi5g1v0070800.3
n.a. UDP-glucuronate decarboxylase protein 1; TAIR: AT3G53520.1 UDP-glucuronic acid decarboxylase 1; Swiss-Prot: sp|Q8VZC0|UXS1_ARATH UDP-glucuronic acid decarboxylase 1; TrEMBL-Plants: tr|I1L8M8|I1L8M8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0070800 LjG1.1_chr5 11678058 11678706 -
2 domain predictions
 –
LotjaGi5g1v0250500.1
n.a. UDP-glucuronate decarboxylase protein 1; TAIR: AT3G62830.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9LZI2|UXS2_ARATH UDP-glucuronic acid decarboxylase 2; TrEMBL-Plants: tr|A0A0S3SSB2|A0A0S3SSB2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0250500 LjG1.1_chr5 55898295 55901874 -
2 domain predictions
 –
LotjaGi5g1v0250500.2
n.a. UDP-glucuronate decarboxylase protein 1; TAIR: AT3G62830.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9LZI2|UXS2_ARATH UDP-glucuronic acid decarboxylase 2; TrEMBL-Plants: tr|A0A0S3SSB2|A0A0S3SSB2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0250500 LjG1.1_chr5 55898375 55901874 -
2 domain predictions
 –
LotjaGi5g1v0250500.3
n.a. UDP-glucuronate decarboxylase protein 1; TAIR: AT3G62830.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9LZI2|UXS2_ARATH UDP-glucuronic acid decarboxylase 2; TrEMBL-Plants: tr|A0A0L9TWE5|A0A0L9TWE5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0250500 LjG1.1_chr5 55898407 55901874 -
2 domain predictions
 –
LotjaGi5g1v0250500.4
n.a. UDP-glucuronic acid decarboxylase-like protein; TAIR: AT3G62830.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9LZI2|UXS2_ARATH UDP-glucuronic acid decarboxylase 2; TrEMBL-Plants: tr|A0A0S3SSB2|A0A0S3SSB2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0250500 LjG1.1_chr5 55898407 55901874 -
2 domain predictions
 –
LotjaGi5g1v0250500.5
n.a. UDP-glucuronate decarboxylase protein 1; TAIR: AT3G62830.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9LZI2|UXS2_ARATH UDP-glucuronic acid decarboxylase 2; TrEMBL-Plants: tr|A0A0S3SSB2|A0A0S3SSB2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0250500 LjG1.1_chr5 55898407 55901880 -
2 domain predictions
 –
LotjaGi6g1v0107500.2
n.a. Cinnamoyl-CoA reductase-like protein; TAIR: AT5G58490.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9S9N9|CCR1_ARATH Cinnamoyl-CoA reductase 1; TrEMBL-Plants: tr|I3SMX7|I3SMX7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0107500 LjG1.1_chr6 24429175 24433750 -
2 domain predictions
 –
LotjaGi6g1v0131100_LC.1
n.a. GDP-mannose 4,6-dehydratase; TAIR: AT3G51160.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|P93031|GMD2_ARATH GDP-mannose 4,6 dehydratase 2; TrEMBL-Plants: tr|F6GWP0|F6GWP0_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0131100_LC LjG1.1_chr6 37175297 37178164 +
2 domain predictions
 –
LotjaGi6g1v0169900_LC.1
n.a. Udp-glucose 4,6-dehydratase; TAIR: AT1G78570.1 rhamnose biosynthesis 1; Swiss-Prot: sp|Q9SYM5|RHM1_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1; TrEMBL-Plants: tr|K7MR59|K7MR59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0169900_LC LjG1.1_chr6 45541943 45544510 +
2 domain predictions
 –
LotjaGi6g1v0169900_LC.2
n.a. Udp-glucose 4,6-dehydratase; TAIR: AT1G78570.1 rhamnose biosynthesis 1; Swiss-Prot: sp|Q9SYM5|RHM1_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1; TrEMBL-Plants: tr|K7MR59|K7MR59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0169900_LC LjG1.1_chr6 45541987 45544223 +
2 domain predictions
 –
LotjaGi6g1v0264300.1
n.a. UDP-glucose 4-epimerase, putative; TAIR: AT1G30620.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1; TrEMBL-Plants: tr|A0A072VG20|A0A072VG20_MEDTR UDP-D-glucose/UDP-D-galactose 4-epimerase; Found in the gene: LotjaGi6g1v0264300 LjG1.1_chr6 57781237 57787507 -
2 domain predictions
 –
LotjaGi6g1v0264300.2
n.a. UDP-glucose 4-epimerase, putative; TAIR: AT1G30620.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1; TrEMBL-Plants: tr|I3T3Q3|I3T3Q3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0264300 LjG1.1_chr6 57781852 57783579 -
2 domain predictions
 –
LotjaGi6g1v0264300.3
n.a. UDP-glucose 4-epimerase, putative; TAIR: AT1G30620.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1; TrEMBL-Plants: tr|A0A072VG20|A0A072VG20_MEDTR UDP-D-glucose/UDP-D-galactose 4-epimerase; Found in the gene: LotjaGi6g1v0264300 LjG1.1_chr6 57781852 57784963 -
2 domain predictions
 –
LotjaGi6g1v0264300.4
n.a. UDP-glucose 4-epimerase, putative; TAIR: AT1G30620.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1; TrEMBL-Plants: tr|A0A072VG20|A0A072VG20_MEDTR UDP-D-glucose/UDP-D-galactose 4-epimerase; Found in the gene: LotjaGi6g1v0264300 LjG1.1_chr6 57781852 57786009 -
2 domain predictions
 –
LotjaGi6g1v0306300.1
n.a. Divinyl reductase; TAIR: AT5G18660.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|J9RYI6|DCVR_CUCSA Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic; TrEMBL-Plants: tr|A0A1J7I5N1|A0A1J7I5N1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0306300 LjG1.1_chr6 62351017 62352955 +
2 domain predictions
 –