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Lj1g3v3139990.1

Overview

Field Value
Gene ID Lj1g3v3139990
Transcript ID Lj1g3v3139990.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: histone-lysine N-methyltransferase ATX2-like [Glycine max] gi|356568903|ref|XP_003552647.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
53 136 84 – –
SUPERFAMILY
SSF63748
312 413 102 4.73E-21 –
Gene3D
G3DSA:2.30.30.160
313 410 98 2.30E-20 –
SMART
SM00293
316 379 64 3.00E-07
IPR000313
Pfam
PF00855
316 406 91 2.80E-14
IPR000313
ProSiteProfiles
PS50812
318 381 64 14.039
IPR000313
ProSiteProfiles
PS51542
460 519 60 22.333
IPR003888
Pfam
PF05964
467 516 50 1.10E-10
IPR003888
SMART
SM00541
475 519 45 5.50E-06
IPR003888
ProSiteProfiles
PS51543
523 609 87 20.584
IPR003889
Pfam
PF05965
525 599 75 1.40E-10
IPR003889
SMART
SM00542
527 616 90 6.20E-09
IPR003889
PANTHER
PTHR13793
603 759 157 1.90E-116 –
PANTHER
PTHR13793:SF100
603 759 157 1.90E-116 –
SUPERFAMILY
SSF57903
627 696 70 5.09E-11
IPR011011
ProSiteProfiles
PS50016
632 683 52 8.867
IPR019787
Gene3D
G3DSA:3.30.40.10
633 682 50 6.50E-09
IPR013083
CDD
cd15494
634 680 47 2.04E-25 –
SMART
SM00249
634 681 48 1.30E-06
IPR001965
ProSitePatterns
PS01359
635 680 46 –
IPR019786
Pfam
PF13831
646 681 36 1.70E-12 –
Pfam
PF13832
688 759 72 2.50E-20 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj1g3v3139990.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3139990.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.