Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v1811590.1

Overview

Field Value
Gene ID Lj5g3v1811590
Transcript ID Lj5g3v1811590.1
Lotus japonicus genome version MG20 v3.0
Description Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula] gi|357443207|ref|XP_003591881.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10579:SF61
1 575 575 1.40E-274 –
PANTHER
PTHR10579
1 575 575 1.40E-274 –
SUPERFAMILY
SSF57850
7 44 38 1.14E-09 –
Gene3D
G3DSA:3.30.40.10
8 46 39 5.20E-09
IPR013083
CDD
cd00162
9 41 33 1.54E-07 –
Pfam
PF00097
11 37 27 1.90E-04
IPR018957
MobiDBLite
mobidb-lite
101 134 34 – –
SUPERFAMILY
SSF53300
190 381 192 5.98E-33
IPR002035
Gene3D
G3DSA:3.40.50.410
190 381 192 2.50E-31
IPR002035
SMART
SM00327
193 380 188 3.30E-28
IPR002035
CDD
cd01466
194 368 175 9.10E-56 –
Pfam
PF00092
195 378 184 3.60E-24
IPR002035
ProSiteProfiles
PS50234
195 381 187 16.505
IPR002035
Coils
Coil
540 560 21 – –
Pfam
PF14624
544 616 73 2.50E-21
IPR032838

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj5g3v1811590.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1811590.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.