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Lj1g3v4830280.1

Overview

Field Value
Gene ID Lj1g3v4830280
Transcript ID Lj1g3v4830280.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein transport protein Sec23A-like [Glycine max] gi|356572844|ref|XP_003554575.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 130 130 – –
SUPERFAMILY
SSF81995
41 186 146 6.67E-27 –
PANTHER
PTHR11141
137 873 737 0 –
PANTHER
PTHR11141:SF6
137 873 737 0 –
Gene3D
G3DSA:2.60.40.1670
153 220 68 3.70E-07 –
SUPERFAMILY
SSF82919
185 259 75 1.28E-16
IPR006895
Pfam
PF04810
195 229 35 1.30E-09
IPR006895
CDD
cd01468
269 511 243 1.92E-61 –
SUPERFAMILY
SSF53300
276 507 232 2.45E-37
IPR002035
Gene3D
G3DSA:3.40.50.410
276 518 243 3.20E-42
IPR002035
Pfam
PF04811
277 502 226 3.60E-12
IPR006896
SUPERFAMILY
SSF81995
517 622 106 6.67E-27 –
Pfam
PF08033
520 611 92 6.40E-11
IPR012990
Gene3D
G3DSA:2.60.40.1670
531 608 78 3.70E-07 –
SUPERFAMILY
SSF81811
624 724 101 3.92E-24
IPR006900
Pfam
PF04815
625 721 97 1.80E-11
IPR006900
CDD
cd11280
726 817 92 2.14E-13 –
SUPERFAMILY
SSF82754
726 866 141 2.35E-27
IPR007123
Gene3D
G3DSA:3.40.20.10
726 840 115 3.50E-18
IPR029006

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of
GO:0006888
Biological process ER to Golgi vesicle-mediated transport The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0030127
Cellular component COPII vesicle coat One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state.
Subterm of
Part of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj1g3v4830280.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4830280.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.