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Lj3g3v3131860.1

Overview

Field Value
Gene ID Lj3g3v3131860
Transcript ID Lj3g3v3131860.1
Lotus japonicus genome version MG20 v3.0
Description Inter-alpha-trypsin inhibitor heavy chain H4 [Medicago truncatula] gi|357466819|ref|XP_003603694.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 106 106 – –
PANTHER
PTHR10579:SF55
92 286 195 7.70E-286 –
PANTHER
PTHR10579
92 286 195 7.70E-286 –
SUPERFAMILY
SSF57850
119 175 57 9.42E-12 –
Gene3D
G3DSA:3.30.40.10
123 178 56 1.60E-09
IPR013083
Pfam
PF17123
125 154 30 1.60E-10
IPR001841
SMART
SM00184
125 169 45 4.70E-06
IPR001841
CDD
cd00162
125 173 49 2.68E-06 –
ProSiteProfiles
PS50089
125 170 46 11.398
IPR001841
MobiDBLite
mobidb-lite
189 256 68 – –
PANTHER
PTHR10579
305 730 426 7.70E-286 –
PANTHER
PTHR10579:SF55
305 730 426 7.70E-286 –
Gene3D
G3DSA:3.40.50.410
351 506 156 5.50E-19
IPR002035
SMART
SM00327
354 543 190 5.20E-16
IPR002035
SUPERFAMILY
SSF53300
354 534 181 1.00E-20
IPR002035
CDD
cd01466
355 530 176 1.11E-54 –
ProSiteProfiles
PS50234
356 504 149 13.405
IPR002035
Pfam
PF13519
357 463 107 1.40E-14
IPR002035
MobiDBLite
mobidb-lite
462 482 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v3131860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3131860.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.