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Lj0g3v0032889.1

Overview

Field Value
Gene ID Lj0g3v0032889
Transcript ID Lj0g3v0032889.1
Lotus japonicus genome version MG20 v3.0
Description Cellular nucleic acid-binding protein [Medicago truncatula] gi|357459751|ref|XP_003600156.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam
PF03732
12 83 72 4.50E-10
IPR005162
MobiDBLite
mobidb-lite
117 152 36 – –
SUPERFAMILY
SSF57756
151 197 47 1.01E-10
IPR001878
Gene3D
G3DSA:4.10.60.10
156 197 42 7.30E-12
IPR001878
PANTHER
PTHR23002
157 214 58 8.80E-12 –
Pfam
PF00098
159 174 16 2.10E-06
IPR001878
SMART
SM00343
159 175 17 9.40E-04
IPR001878
ProSiteProfiles
PS50158
160 173 14 9.752
IPR001878
ProSiteProfiles
PS50158
180 195 16 9.867
IPR001878
SMART
SM00343
180 196 17 0.015
IPR001878
SUPERFAMILY
SSF57756
197 223 27 6.98E-06
IPR001878
Gene3D
G3DSA:4.10.60.10
200 244 45 9.60E-08
IPR001878
SMART
SM00343
200 216 17 7.70E-05
IPR001878
Pfam
PF00098
200 216 17 1.20E-06
IPR001878
ProSiteProfiles
PS50158
201 216 16 10.312
IPR001878
SUPERFAMILY
SSF50630
237 330 94 9.00E-08
IPR021109
Pfam
PF08284
238 330 93 5.70E-16
IPR013242
CDD
cd00303
243 330 88 9.84E-20 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0032889.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0032889.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.