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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0313500 |
| Transcript ID | LotjaGi4g1v0313500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SNARE; TAIR: AT1G48240.1 Putative plant snare 12; Swiss-Prot: sp|Q9LNH6|NPS12_ARATH Novel plant SNARE 12; TrEMBL-Plants: tr|I3SMK2|I3SMK2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0313500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69032334..69032931) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCAAATCAAGAACTTGTCAATGCTGGGATGAAAACAATGGATGAAACTGATCAGGCTATTGAGAGATCTAAGCAGGT GAGTCACTTCAGACTTATGCCCCCATCAATTTTCCTTTGGACCTTTGTTCTTACCCATATCAAAATGTAGGTTGTACATC AAACAGTTGAAGTGGGCACCCAAACTGCTGGTACCTTGAAAGGCCAAGTAAGTTTGATTCTCCTTGAGTATGCTCTCTGA AGAGAAGAGTACAAGGATTTACTAGTTTAACCTCTTTCTTTTATTCAAATTATGCAGACTGAACAAATGGGCCGTATTGT TAACGAGCTTGATTCGATCCAGTTCTCAATTAAGAAGGCCTCCCAACTCGTTAAGGAGATTGGTAGACAGGTTGCTTCAT TTTCATTGCTTCTAGTCACCATTTACATTCCATTAAACCTGTGTCATTGAACTAAATTGTCTTTCCCCCTGTTCTCAGGT AGCTACGGACAAGTGTATCATGCTTTTTCTGTTCCTTATCGTCTGTGGTGTAGTTGCCATTATTGTCGTGAAGGTATCAT GTTAAAATTCATCTACTGATTCAGCGAATTTGTTCTAG
CDS sequence (LotjaGi4g1v0313500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAATCAAGAACTTGTCAATGCTGGGATGAAAACAATGGATGAAACTGATCAGGCTATTGAGAGATCTAAGCAGGT TGTACATCAAACAGTTGAAGTGGGCACCCAAACTGCTGGTACCTTGAAAGGCCAAACTGAACAAATGGGCCGTATTGTTA ACGAGCTTGATTCGATCCAGTTCTCAATTAAGAAGGCCTCCCAACTCGTTAAGGAGATTGGTAGACAGGTAGCTACGGAC AAGTGTATCATGCTTTTTCTGTTCCTTATCGTCTGTGGTGTAGTTGCCATTATTGTCGTGAAGGTATCATGTTAA
Protein sequence (LotjaGi4g1v0313500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNQELVNAGMKTMDETDQAIERSKQVVHQTVEVGTQTAGTLKGQTEQMGRIVNELDSIQFSIKKASQLVKEIGRQVATD KCIMLFLFLIVCGVVAIIVVKVSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 102 | 102 | 1.6E-54 | – | |
| Phobius | 1 | 81 | 81 | - | – | |
| SUPERFAMILY | 1 | 74 | 74 | 2.88E-17 | – | |
| PANTHER | 1 | 102 | 102 | 1.6E-54 | – | |
| Gene3D | 2 | 81 | 80 | 1.9E-17 | – | |
| SMART | 6 | 73 | 68 | 5.4E-6 | ||
| CDD | 10 | 72 | 63 | 6.46714E-19 | – | |
| ProSiteProfiles | 11 | 73 | 63 | 10.43 | ||
| Pfam | 19 | 99 | 81 | 1.8E-8 | ||
| Phobius | 82 | 100 | 19 | - | – | |
| TMHMM | 83 | 100 | 18 | - | – | |
| Phobius | 101 | 104 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | SNAP receptor activity | Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. | ||
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. |
Expression pattern of LotjaGi4g1v0313500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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