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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0253000 |
| Transcript ID | LotjaGi5g1v0253000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coatomer subunit alpha; TAIR: AT1G62020.1 Coatomer, alpha subunit; Swiss-Prot: sp|Q94A40|COPA1_ARATH Coatomer subunit alpha-1; TrEMBL-Plants: tr|V7BIE1|V7BIE1_PHAVU Coatomer subunit alpha; Found in the gene: LotjaGi5g1v0253000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56211495..56216991) extracted from Lotus japonicus Gifu genome v1.2.
GTGGAAATGAAATAGAGGAGCATGTGTTTTGAAATTAAAGTTATAAGAGAAAATATATTTTTGCAATATTTTCTATATTT TTATAACTATAATATTTTTGTTATATGTTTGTGTGAGTGAGTGTGAGGAAAACGCACTTGTAACGCGGGTATGCTCGAGA CGAAGGATCTCAGATCTCAATCTCAATCTCAATCTCAATCTCAATCTCAACAAAACCCTCTTCTTCTTCTTCTTCTTCTT CTTCTTCTTCATCTCTGATCTCAATCCTCTCTCATCTTCCCTCAAACCCTAATCGCATCACTGCATCACTCTCGATCCCC ATTTCTCGATCCAATCGCAGTTGATTAGCATCATCAGCATCAACAATCGAAGAAGATGCTGACCAAGTTCGAAACCAAGA GTAACCGAGTAAAGGGTCTCAGCTTCCACCCCAAACGCCCATGGATCCTCGCCAGTCTCCACAGCGGCGTCATCCAGCTT TGGGATTACCGCATGGGAACCCTAATCGACAAATTCGACGAGCACGACGGCCCCGTCAGAGGCGTCCATTTTCATCACTC TCAACCCCTCTTCGTCTCCGGCGGTACACACTCTCTCTCTCTCTCTCTCTCACCCTTCATTCATTCCCATTTCCAATCCA ATTCTTAGATCTGAGATTTTTTGAATTGAATTGCAGGTGATGATTACAAGATCAAGGTTTGGAACTACAAGCTGCATCGC TGTTTGTTTACGCTTCTGGGTCATCTTGATTACATCCGCACTGTGCAGTTTCACCATGAGAGTCCCTGGATTGTGAGTGC TAGTGATGATCAGACCATTCGCATCTGGAACTGGCAGTCACGGACCTGCATTTCGGTTCTTACTGGGCACAATCATTATG TTATGTGTGCGCTGTTTCATCCTAGGGAGGATCTCGTTGTGTCGGCGTCGCTGGATCAGACGGTTCGTGTTTGGGATATT GGGTCTCTCAAGAGGAAGAATGCTTCCCCTGCTGATGATATATTGCGGTTGAGTCAGATGAATACTGACCTATTTGGTGG GGTTGATGCTGTTGTTAAGTATGTTTTGGAAGGGCATGACCGCGGAGTTAATTGGGCTTCGTTTCATCCCGCGCTGCCTC TTATTGTCTCGGCTGCAGATGACCGGCAAGTGAAGCTTTGGAGGATGAACGGTGAATACCAAACCTTCTAGTTTTATTTA CTTTATGTTGTGTTCTTTAGTTATAAGTAAGTGTTGACAATTCCACATTGCATATCTGACTTTTGATTGATAATTTTAAG TGCTGGGCTGTCTGGATGTTCATGTAGTATATAGATGCTATGCTGATCATTGTATTAACATGAGTGGTTGCCTGTGGAGG AAAGCTGTTAGTTGTGGTGAAAACTGAAAATGAACATTGCATATCTGACTTTCCATTGCTTATTTGAAGTGCTGGATTTT CATGTAGTGTATTGATGCTATGCTGATCATAGTATTAACATGAGTGGTTGCCTGAGTGGAATGTGGAGGAAATCTGTTAG TTGTGGTGAAAACCGAAAATGAAATATTATGTCAACCTGAGATGAATTAGATCATGTAGTGCGTAGTGAAAAATTAACTA GTTAGTATTTGAAGTGGGCTTGTTTTTGCTGCTAATGAATGAAATGTGATTCTATTTCAGACACGAAGGCATGGGAAGTG GACACCTTGAGGGGGCACATGAATAATGTTTCCTGTGTTATGTTCCATGCCAAGCAGGATATCATAGTGTCTAATTCTGA GGATAAGAGTATTCGCATATGGGATGCGACAAAGCGAACTGGAGTCCAAACATTCCGCCGGGAGCATGACAGGTTTTGGA TTCTTGCTGCTCATCCTGAGATGAATCTGCTTGCAGCTGGTCATGACAGTGGCATGATTGTTTTTAAGCTGGAGCGAGAA AGGCCTGCTTTTGTGGTTAGCGGTGATTCTTTGTTCTACACAAAAGATCGGTTCTTGTGTTTCTATGAATTTTCAACACA GAGAGATGTGCAAGTACTTCCATTCCGACGACCTGGCTCTTTAAGCTTGAATCAGAGCCCAAAGACTCTTTCCTATAGCC CATCTGAAAATGCATTTCTTCTGTGTTCAGATGTGGATGGTGGATCCTATGAATTATATTGCATATCAAAGGATGGTTAT GGTAGAGGAGGTGATGTGCAAGATGCAAAAAAAGGCCATGGAGGATCAGCAGTCTTTGTGGCTCGTAATCGATTTGCTGT GCTTGAGAAAAGCAACAATCAAGTCCTGATAAAAAATTTAAAAAATGAGATTGTTAAAAAGAGTGTCCTTCCGATTGCCA CCGATGCCATATTCTATGCAGGAACAGGCAACTTGCTATGTAGGTCAGAGGACAGGGTTGTTATATTTGATCTTCAGCAG AGGATTCTTCTTGGTGATCTTCAGACCCCTTTTATCAAATATGTCGTGTGGTCTAATGACATGGAAAATGTTGCTTTGCT CAGCAAACATGCCATTATAATTGCTAGCAAGAAGCTTGTGCACCAATGCACTCTCCACGAGACAATCCGTGTAAAGAGTG GAGCATGGGATGACAATGGTGTTTTCATTTACACAACACTAAATCACATCAAATACTGTCTTCCTAATGGAGATAATGGC ATAATAAAAACTCTGGACATTCCAATTTATATCACAAAGGTTTCTGGAAACACAATCTTCTGCTTGGATCGGGATGGAAA GAGCAGAACAATAATTATTGACGCAACTGAATATATTTTCAAGCTTTCCCTCTTGAAGAAAAGATATGACCATGTTATGA ACATGATAAGGAACTCACAGCTTTGCGGGCAGGCTATGATTGCTTATCTACAACAGAAGGGATTTCCTGAGGTTGCCCTG CATTTTGTGAAAGATGAGAGAATTCGGTTCAATTTGGCTTTAGAGAGTGGCAACATCCAAATTGCAGTTGCATCTGCTAC AGCAATTGATGAGAAAGATCACTGGTATCGATTAGGGGTTGAGGCTCTTCGCCAAGGCAATGCTGGTATAGTAGAGTATG CATACCAGAGAACCAAAAATTTTGAGAGATTGTCTTTCCTTTATCTCATAACTGGTAACAAGGAGAAACTATCAAAAATG TTGAAAATTGCTGAAGTCAAGAATGATGTGATGGGCCAGTTTCACAATGCCTTATATATGGGTGATATTCGAGAACGTGT GAAGATCTTGGAGAATGTGGGCCATTTGCCTCTTGCTTACATCACTGCATCAGTCCATGGGCTACATGATGTTGCAGAAC GGCTTGCAGCTGAACTGGGAGATAATGTTCCCTCTTTGCCAGAGGGAAAAGTACCGTCTCTTTTGATACCCCCATCACCC GTCATTTCTGGAAGTGATTGGCCCCTTCTCAGGGTCATGCGGGGCATGTTTGATGGTGCGTTTGACAATATTGGTCGGGG TGTTGCTGATGAAGAAGAGTATGAGGCTGTTGATGGTGATTGGGGTGAGGAGCTTGACATAGTTGATGCAGATGGCTTAC AAAATGGAGAATTGGAGGATGGAGAAGTGGCTGAAGAAAATGATGAAGAGGGTGGATGGGAGTTGGAGGATTTAGGGCTG GGCCCTGAAGTTGACACCCCAAAAGCTTCCAGCGCTACACAATCTTCAGTTTTTGTGGCCCCAACACCTGGCATGCCGGT AAGCAATATATGGATTCAGAAATCATCTCTTGCAGCTGATCATGCAGCTGCAGGAAATTTTGATACTGCAATGAGGTTAC TGAACCGGCAGCTTGGGATAAGAAATTTTGCCCCCTTGAAATCCATGTTTCTCGATCTTCATACTGGGAGCCATTCCTAT CTGCGTGCATTTTCGTCTGCTCCAGTCATACCACTTGCAATTGAAAGAGATTGGACCGAGTCATCTAGTCCAAATGTAAG AGGCTCACCAGTACTTCCTTTCAAGTTGTCCCAATTGGATGAAAAACTTAAAGCTGGTTATAGGTTCTTTACTGCTGGAA AATTCACAGAGGCTCTTCGGACATTTGTTAATATCCTTCATACAATTCCTTTGATTGTTGTGGAGTCAAGAAGGGAAGTG GATGAGGTGAAGGAACTGATTATCATAGTCAAAGAGTATGTTTTGGGTCTGCAGATGGAGCTGAAGAGGAGGGAAATCAA GGACAATCCAGCACGACTGCAGGAGCTTGCTGCTTATTTCACTCACTGCAACCTTCAGGCACCTCACTTGAGGTTAGCTT TGCAGAGTGCAATGACTGTCTGCTTCAGGTCAAAGAACCTTGCTTCTGCTGCGAACTTTGCCAGGCGGCTGCTTGAGACA AGTCCTACCATTGAAAACCAAGCTAAGCAAGCAAGGCAAGTGCTGGCAGCTGCCGAAAGAAATATGACTGATGCCACAGA GCTGAACTATGATTTCCGGAACCCATTTGTAATCTGTGGTGCGACATATGTGCCAATCTACCGAGGACAGAAGGATGTCT CTTGCCCATATTGCACATCTCGTTTTGTGCCAAGCCAGGAGGCGCAGCTATGTACTGTTTGTGACCTTGCTGTGGTAGGA GCAGATGCTTCTGGACTACTCTGTTCACCTTCCCAGAAACGCTGATTGAGCAACAGTACTGGAGCATTTTTCTCTAATTT TGTTTCAGGTCAATTTTCAGCACTGGATAGATCTCTGCTGGTTAGTTAATATATTCATGGTACTGTGGTAGAAACTAGAA ACACTGAGGAATTACTTTTTGCCCTTTTATTCTGTTGAATATGATTTTCAATGTAATAAACCCATTTCGTATGCTGAGGG GTGTTAGTTTTTCATATACAAGAAAGTGAAGGGTTGTACTTGGATCATATGATGGTTACAGATTGTACTTTGCGCGGTTT TTTTTTGTTTGGCTAAGTAGATATCATGTGTTCAGTCGGGCTTCAGTCCATTCATGTTGTTTCGATGTACTTAATTCTTT ATTACATTCTCAGGCCTTGGAATTTATTTATAGCTTCTAGTGGTTCTAAATGACCCTCGAGATTTCTTAGATCTTGCTAC TTCCTATGTTTGCTATTATGTGTCTGATTCCTTTTAATTGCTGGATGTGAAATTAGGTCTAATCATATGATTGTGAAATA AGGCCTTTCAGCGTGCTTTGTTAGTCACCTAAGTCTGCAGCATTAGTTATATCTTCAAAGAAACAAGTCATTTATTCCAA AGATTTCGAGAGAGCCATGGCCCTATTGAGTCTGAATGTGTTATGTCTTTTTGAGGGAATTTTGAGTCAACATTTCAATT TATGCCACATGTTGTCCTAAATGTATTAACTTGGCTATTTTCTCCAACCAAACTGATAGTAGCCTAAATCCATTGCATAT TGATTTTCTGATGGCTATATTCTCGGAATAGAGTGGAGCAAACCCCTTCTTTGCCCTCTACACCGCTGAATTTTTGACAT ACCAAAGAAATAGTAGCAAGTATAGCATTAGCCTCTTCAGATAAGAAGGCAACTCAA
CDS sequence (LotjaGi5g1v0253000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGACCAAGTTCGAAACCAAGAGTAACCGAGTAAAGGGTCTCAGCTTCCACCCCAAACGCCCATGGATCCTCGCCAG TCTCCACAGCGGCGTCATCCAGCTTTGGGATTACCGCATGGGAACCCTAATCGACAAATTCGACGAGCACGACGGCCCCG TCAGAGGCGTCCATTTTCATCACTCTCAACCCCTCTTCGTCTCCGGCGGTGATGATTACAAGATCAAGGTTTGGAACTAC AAGCTGCATCGCTGTTTGTTTACGCTTCTGGGTCATCTTGATTACATCCGCACTGTGCAGTTTCACCATGAGAGTCCCTG GATTGTGAGTGCTAGTGATGATCAGACCATTCGCATCTGGAACTGGCAGTCACGGACCTGCATTTCGGTTCTTACTGGGC ACAATCATTATGTTATGTGTGCGCTGTTTCATCCTAGGGAGGATCTCGTTGTGTCGGCGTCGCTGGATCAGACGGTTCGT GTTTGGGATATTGGGTCTCTCAAGAGGAAGAATGCTTCCCCTGCTGATGATATATTGCGGTTGAGTCAGATGAATACTGA CCTATTTGGTGGGGTTGATGCTGTTGTTAAGTATGTTTTGGAAGGGCATGACCGCGGAGTTAATTGGGCTTCGTTTCATC CCGCGCTGCCTCTTATTGTCTCGGCTGCAGATGACCGGCAAGTGAAGCTTTGGAGGATGAACGACACGAAGGCATGGGAA GTGGACACCTTGAGGGGGCACATGAATAATGTTTCCTGTGTTATGTTCCATGCCAAGCAGGATATCATAGTGTCTAATTC TGAGGATAAGAGTATTCGCATATGGGATGCGACAAAGCGAACTGGAGTCCAAACATTCCGCCGGGAGCATGACAGGTTTT GGATTCTTGCTGCTCATCCTGAGATGAATCTGCTTGCAGCTGGTCATGACAGTGGCATGATTGTTTTTAAGCTGGAGCGA GAAAGGCCTGCTTTTGTGGTTAGCGGTGATTCTTTGTTCTACACAAAAGATCGGTTCTTGTGTTTCTATGAATTTTCAAC ACAGAGAGATGTGCAAGTACTTCCATTCCGACGACCTGGCTCTTTAAGCTTGAATCAGAGCCCAAAGACTCTTTCCTATA GCCCATCTGAAAATGCATTTCTTCTGTGTTCAGATGTGGATGGTGGATCCTATGAATTATATTGCATATCAAAGGATGGT TATGGTAGAGGAGGTGATGTGCAAGATGCAAAAAAAGGCCATGGAGGATCAGCAGTCTTTGTGGCTCGTAATCGATTTGC TGTGCTTGAGAAAAGCAACAATCAAGTCCTGATAAAAAATTTAAAAAATGAGATTGTTAAAAAGAGTGTCCTTCCGATTG CCACCGATGCCATATTCTATGCAGGAACAGGCAACTTGCTATGTAGGTCAGAGGACAGGGTTGTTATATTTGATCTTCAG CAGAGGATTCTTCTTGGTGATCTTCAGACCCCTTTTATCAAATATGTCGTGTGGTCTAATGACATGGAAAATGTTGCTTT GCTCAGCAAACATGCCATTATAATTGCTAGCAAGAAGCTTGTGCACCAATGCACTCTCCACGAGACAATCCGTGTAAAGA GTGGAGCATGGGATGACAATGGTGTTTTCATTTACACAACACTAAATCACATCAAATACTGTCTTCCTAATGGAGATAAT GGCATAATAAAAACTCTGGACATTCCAATTTATATCACAAAGGTTTCTGGAAACACAATCTTCTGCTTGGATCGGGATGG AAAGAGCAGAACAATAATTATTGACGCAACTGAATATATTTTCAAGCTTTCCCTCTTGAAGAAAAGATATGACCATGTTA TGAACATGATAAGGAACTCACAGCTTTGCGGGCAGGCTATGATTGCTTATCTACAACAGAAGGGATTTCCTGAGGTTGCC CTGCATTTTGTGAAAGATGAGAGAATTCGGTTCAATTTGGCTTTAGAGAGTGGCAACATCCAAATTGCAGTTGCATCTGC TACAGCAATTGATGAGAAAGATCACTGGTATCGATTAGGGGTTGAGGCTCTTCGCCAAGGCAATGCTGGTATAGTAGAGT ATGCATACCAGAGAACCAAAAATTTTGAGAGATTGTCTTTCCTTTATCTCATAACTGGTAACAAGGAGAAACTATCAAAA ATGTTGAAAATTGCTGAAGTCAAGAATGATGTGATGGGCCAGTTTCACAATGCCTTATATATGGGTGATATTCGAGAACG TGTGAAGATCTTGGAGAATGTGGGCCATTTGCCTCTTGCTTACATCACTGCATCAGTCCATGGGCTACATGATGTTGCAG AACGGCTTGCAGCTGAACTGGGAGATAATGTTCCCTCTTTGCCAGAGGGAAAAGTACCGTCTCTTTTGATACCCCCATCA CCCGTCATTTCTGGAAGTGATTGGCCCCTTCTCAGGGTCATGCGGGGCATGTTTGATGGTGCGTTTGACAATATTGGTCG GGGTGTTGCTGATGAAGAAGAGTATGAGGCTGTTGATGGTGATTGGGGTGAGGAGCTTGACATAGTTGATGCAGATGGCT TACAAAATGGAGAATTGGAGGATGGAGAAGTGGCTGAAGAAAATGATGAAGAGGGTGGATGGGAGTTGGAGGATTTAGGG CTGGGCCCTGAAGTTGACACCCCAAAAGCTTCCAGCGCTACACAATCTTCAGTTTTTGTGGCCCCAACACCTGGCATGCC GGTAAGCAATATATGGATTCAGAAATCATCTCTTGCAGCTGATCATGCAGCTGCAGGAAATTTTGATACTGCAATGAGGT TACTGAACCGGCAGCTTGGGATAAGAAATTTTGCCCCCTTGAAATCCATGTTTCTCGATCTTCATACTGGGAGCCATTCC TATCTGCGTGCATTTTCGTCTGCTCCAGTCATACCACTTGCAATTGAAAGAGATTGGACCGAGTCATCTAGTCCAAATGT AAGAGGCTCACCAGTACTTCCTTTCAAGTTGTCCCAATTGGATGAAAAACTTAAAGCTGGTTATAGGTTCTTTACTGCTG GAAAATTCACAGAGGCTCTTCGGACATTTGTTAATATCCTTCATACAATTCCTTTGATTGTTGTGGAGTCAAGAAGGGAA GTGGATGAGGTGAAGGAACTGATTATCATAGTCAAAGAGTATGTTTTGGGTCTGCAGATGGAGCTGAAGAGGAGGGAAAT CAAGGACAATCCAGCACGACTGCAGGAGCTTGCTGCTTATTTCACTCACTGCAACCTTCAGGCACCTCACTTGAGGTTAG CTTTGCAGAGTGCAATGACTGTCTGCTTCAGGTCAAAGAACCTTGCTTCTGCTGCGAACTTTGCCAGGCGGCTGCTTGAG ACAAGTCCTACCATTGAAAACCAAGCTAAGCAAGCAAGGCAAGTGCTGGCAGCTGCCGAAAGAAATATGACTGATGCCAC AGAGCTGAACTATGATTTCCGGAACCCATTTGTAATCTGTGGTGCGACATATGTGCCAATCTACCGAGGACAGAAGGATG TCTCTTGCCCATATTGCACATCTCGTTTTGTGCCAAGCCAGGAGGCGCAGCTATGTACTGTTTGTGACCTTGCTGTGGTA GGAGCAGATGCTTCTGGACTACTCTGTTCACCTTCCCAGAAACGCTGA
Protein sequence (LotjaGi5g1v0253000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDKFDEHDGPVRGVHFHHSQPLFVSGGDDYKIKVWNY KLHRCLFTLLGHLDYIRTVQFHHESPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCALFHPREDLVVSASLDQTVR VWDIGSLKRKNASPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPALPLIVSAADDRQVKLWRMNDTKAWE VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGVQTFRREHDRFWILAAHPEMNLLAAGHDSGMIVFKLER ERPAFVVSGDSLFYTKDRFLCFYEFSTQRDVQVLPFRRPGSLSLNQSPKTLSYSPSENAFLLCSDVDGGSYELYCISKDG YGRGGDVQDAKKGHGGSAVFVARNRFAVLEKSNNQVLIKNLKNEIVKKSVLPIATDAIFYAGTGNLLCRSEDRVVIFDLQ QRILLGDLQTPFIKYVVWSNDMENVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDN GIIKTLDIPIYITKVSGNTIFCLDRDGKSRTIIIDATEYIFKLSLLKKRYDHVMNMIRNSQLCGQAMIAYLQQKGFPEVA LHFVKDERIRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNKEKLSK MLKIAEVKNDVMGQFHNALYMGDIRERVKILENVGHLPLAYITASVHGLHDVAERLAAELGDNVPSLPEGKVPSLLIPPS PVISGSDWPLLRVMRGMFDGAFDNIGRGVADEEEYEAVDGDWGEELDIVDADGLQNGELEDGEVAEENDEEGGWELEDLG LGPEVDTPKASSATQSSVFVAPTPGMPVSNIWIQKSSLAADHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHTGSHS YLRAFSSAPVIPLAIERDWTESSSPNVRGSPVLPFKLSQLDEKLKAGYRFFTAGKFTEALRTFVNILHTIPLIVVESRRE VDEVKELIIIVKEYVLGLQMELKRREIKDNPARLQELAAYFTHCNLQAPHLRLALQSAMTVCFRSKNLASAANFARRLLE TSPTIENQAKQARQVLAAAERNMTDATELNYDFRNPFVICGATYVPIYRGQKDVSCPYCTSRFVPSQEAQLCTVCDLAVV GADASGLLCSPSQKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 1208 | 1208 | 0.0 | – | |
| Gene3D | 1 | 319 | 319 | 3.1E-125 | ||
| PIRSF | 1 | 1211 | 1211 | 0.0 | ||
| PANTHER | 1 | 1208 | 1208 | 0.0 | – | |
| SMART | 2 | 37 | 36 | 11.0 | ||
| SUPERFAMILY | 4 | 315 | 312 | 6.11E-74 | ||
| ProSiteProfiles | 5 | 326 | 322 | 52.124 | ||
| ProSiteProfiles | 5 | 46 | 42 | 8.704 | ||
| CDD | 9 | 317 | 309 | 2.33537E-74 | – | |
| SMART | 40 | 79 | 40 | 4.1E-7 | ||
| Pfam | 43 | 79 | 37 | 3.7E-5 | ||
| ProSiteProfiles | 47 | 88 | 42 | 12.58 | ||
| SMART | 82 | 121 | 40 | 6.6E-9 | ||
| Pfam | 84 | 121 | 38 | 2.6E-8 | ||
| ProSiteProfiles | 89 | 130 | 42 | 14.118 | ||
| PRINTS | 108 | 122 | 15 | 3.2E-7 | ||
| SMART | 124 | 163 | 40 | 6.3E-10 | ||
| Pfam | 126 | 163 | 38 | 1.2E-6 | ||
| ProSiteProfiles | 131 | 172 | 42 | 14.753 | ||
| PRINTS | 150 | 164 | 15 | 3.2E-7 | ||
| ProSitePatterns | 150 | 164 | 15 | - | ||
| SMART | 193 | 232 | 40 | 2.9E-5 | ||
| Pfam | 198 | 231 | 34 | 0.011 | ||
| ProSiteProfiles | 200 | 241 | 42 | 12.346 | ||
| SUPERFAMILY | 237 | 548 | 312 | 3.92E-13 | ||
| SMART | 237 | 276 | 40 | 1.6E-6 | ||
| Pfam | 241 | 276 | 36 | 1.9E-5 | ||
| ProSiteProfiles | 244 | 285 | 42 | 15.154 | ||
| PRINTS | 263 | 277 | 15 | 3.2E-7 | ||
| SMART | 279 | 317 | 39 | 140.0 | ||
| Pfam | 347 | 768 | 422 | 7.6E-130 | ||
| Gene3D | 640 | 813 | 174 | 5.4E-69 | – | |
| Pfam | 815 | 1214 | 400 | 7.1E-168 | ||
| Coils | 1129 | 1149 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural molecule activity | The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Cellular component | Membrane coat | Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules. | ||
| Cellular component | COPI vesicle coat | One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. |
Expression pattern of LotjaGi5g1v0253000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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