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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0754600 |
| Transcript ID | LotjaGi1g1v0754600.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein transport protein SEC23; TAIR: AT4G01810.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q0US25|SEC23_PHANO Protein transport protein SEC23; TrEMBL-Plants: tr|A0A151TXC4|A0A151TXC4_CAJCA Protein transport protein Sec23A; Found in the gene: LotjaGi1g1v0754600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132768470..132772946) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTAACCCAACACAACCTAATGTTGGGTTCACCCCTTCAAACCCAGACAGACAGGGTCAAAACCCTGACAAGGGTCC AATTCCCCCACCTCTTAGTTTTGCAGCTGCACCTAGATTTCCTCCACCAAAATTACAGTTACATCAAGATCAAGCTTCTC CCCAACCCGCTAAAACCCCGAGCCCAAACCTTGTTTCACCGGCTAATGGGGTTACCACTGGCAGTCCAGTTCCTCACCTG AGCACCCCTCCTGGACCCCCTGTCTTCTCGTCGCCCGTCCGTCCGGCTGCTGTTCCGTTTCGCACATCGCCTGCATCACC TCAGCCACTTGCTTTTTCGTCAAGCTCTTCTTTGCCAACGTCATCGTCGCCCCAATATTCCAATGGAGCATTTGATTTGC AGTCCCAAGTTTCTGATAGTATAGCGGACCATGCTCCTGTTGGGGAGTCATCCTTTGTTCTTTTTTCAGCTCATAAGGTA TATTCTGCTTTATGTTAATTCATGATCAAGGCATGGAATTTTACATTGAGTTACTGTTCTTTAAGCTTATTATATAATGG GATAAATATTTTTTGTAGATATAAACATCTATTTTCCATTTGATAATTAGGTACTGAAACAGAAGAAACAAGCTAATGTG CCCAGTCTGGGTTTTGGGGCATTGGTCTCTCCTGGGAGGGAGGTCTCAACAGGCCCTCAGGTAATACAGCGTGATCCCCA TCGCTGCCAAAGCTGTGGTGGTTATGCAAATATATATTGCAACATACTACTTGGCTCGGGCCAGTGGCAGTGTGTTATAT GTCGGAAACTGAATGGAAGTGGTGGTGAGTACGTTGCGGCTAGCAAGGAAGATCTTCACAGATTTCCAGAACTGTCTTCA CCCATGGTTGACTATGTTCAAACTGGGAACAAGAGACCTGGTTTTGTTCCAGTTTCAGATTCCAGAATGTCTGCCCCAGT TGTTCTTGTAATAGATGAATGTTTAGATGAGCCTCACTTACACCATTTTCAGAGTTCTTTGCATGCTTTTGTTGATTCTC TCCCTCCAACAACAAGATTAGGAATTGTACTATATGGCCGTACTGTATCAGTGTATGACTTCTCAGAAGAATCAATTGCA TCTGCTGATGTGCTTCCCGGGGATAAATCACCAAGTGAAGACTCTTTGAAAGCTTTGATTTATGGTACTGGCATATATTT GTCGCCCATGCATGCTTCATTACCTGTAGCACATTCCATATTTTCATCATTGAGAGCATATAAGTTGAACATACCTGAAG CTTCCAGAGATCGGTGCCTAGGAACTGCTGTGGAGGTTGCTCTTGCTATAATTCAGGGCCCGTCAGATCTGTCCCGAGGG GTAGTCAAAAGGTCAGGGGGTAATAGTAGAGTTATTGTCTGTGCTGGTGGACCGAACACTTATGGGCCTGGATCTGTTCC TCATTCTTTTAGTCACCCTAATTATCCTTATATGGAAAAAACAGCATTGAAATGGATGGAGAATCTGGGTCGTGAGGCTC ATCGACAAAATACTGTGGTTGATATTTTATGTGCTGGAACATGCCCTGTAAGAGTTCCTATCTTACATCCTCTCGCAAAA GCATCAGGTGGAGTTTTTATTCTCCACGATGATTTTGGAGAAGCCTTTGGTGTTAATTTGCAAAGGGCATCAGCCAGATC AGCAGGCTCTCATGGACTGTTAGAATTGCGAACATCAGATGATATTCTCATTACTCAAGTTGTGGGTCCTGGGGAAGAGT CACATGTAGACACCCACGAAACGTTTAAAAATGACACTGCTCTTTATATTCAGATGCTAAGTGTTGAAGAAACACAGTGC TTCTCTATCTCCATGGAAACCAAAGGGGATATCAAAAGCGATTTTGTCTTTTTCCAGTTTACTATTCAGTATTCAAATGT ATATCAAGCTGATGTGTCCAGGGTCATTACTGTTAGACTGCCAACAGTAGATAGCGTTTCAGGATATCTTGAGAGTGTTC AGGATGAAGTGGCCGCTGTCCTCATTGCAAAGAGAACTCTGTTACGAGCCAAAAACCAATCTGATGCAATTGATATGCGA GCAACAATAGATGAAAGAATTAAGGATATTGCTCTTAAATTTGGCTCCCAACTACCAAAATCAAAACTTCATTGCTTCCC AAAGGAGCTTTCTCTCTTACCTGAGATCCTTTTCCATCTCAGGAGAGGATCGCTATTGGGAAGCATTATTGGCCATGAAG ATGAGAGGTCTGTGCTGAGGAACCTGTTTCTGAATGCATCCTTTGACCTATCACTCAGAATGGTGGCTCCTCGTTGTCTA ATGCACAGGGAGGGGGGGACTTTTGAGGAGCTACCAGCTTATGATCTTGCAATGCAGTCTGATACTGCTGTTGTACTTGA CCAGGGCACTGATGTCTTCATTTGGTTGGTATGCCTCCTATCATCTGTTCTAGCATTACATTTTCTTAGTTGGAATTGCA GATAAATTACTTAAGAGTCTTTATCTTTATATGTCTTTTTGGGGAATTATTAGGATACTAATCTAATTGAATTATTGTTA CTGCACTTGCTCTCCTGTCAGCGACAGTACATGTTTTTATATTAGCTTCCTGCTATGTATGACCGTTAACCATTAATGAA AAGGATTATTTCATGGTAATGGATTTGAAATGTCATTGCATTATGACTTGTAGAAAGTAGAAACCAGAGGGGTCTGGTCA CAGTTGTTAACAATGTTAAGTCGTGCAATAGCACTGAGCCACATACAGTGGCACATTGGTGCTCATTTTCCCTCAATTTT GTTGTTCTCTTCTGTCTTGTTTTTGGGAATGGGAAGGCTGGCCAATCTTTTCTGCGTTGACATAGTCGCTGCCTTCGCTA ACTAACAGCGGATGTGACTGGTGGTGGATGGCTAGCCAAAGAGTGCTACAACTGGCAACCCACACTGAGGGAATAAAACT CAGTTTTTTATTCTTAGTCTCTTGACTGACAAGGTTCAAAACTTTGAACTTGTTGGTCAATAACTCTTAAACATGTTCCT GTTATTAAAATTCTTTACCTCTGACTTCAAAACTTTTCTGACTATGAAACGTTTTAGTGTTTGATGTGTGCCATAAAAAA AACTATGGATCTGCTGGAGTGTTTGTTTTTGGCCGAGAGGCATAGCTCCCTCATGTTCGAGTTCTCTGTTTTATTTTACT CAAGTCTGTTATATTGGGGGGCTCTCTCTTTACCATTGATATAGAAGGGACTAGGTCTATAATTTTCTTAATATTGTTGG ATGTTTGAATGCGGTTGTTGTTGAAATAAACCTGACATGAGGTCTGTTTATGAATCTTTAGTTGCATTGCTCTAAATTGT ACATTTTGTCTTGATTTTACCAAAATTTTATTTTGGTCTCTCCAGTGTCCTTTGTAACAATTTTCAACCATATAGTTTTA AATTGTTGTAATTAAGCCTCCAATAATTTTTTGTTGATGTACTTTTTCTGGTCTGGCAAAAAACCTCTTCTGCTTATATG ACATTCAGTTTGATGATGGGACACCCATTTTTATAACATGGAGACACACGCAACATCACAAATAGTGTCTATACATCAAC AAGATTGCAACTTCAATTGCATGCTGAAACACTTGTCGGCATCAAGTTGCTATTTAAACTAGGATATTGAAACTGAAATT TGATTAAGTTAATTAGTCCAGAAGGGTAATTCAGGCTGAACTTTGCGCTCATGAATATAGCATTATATATTTCTAGCTTT TTTTTGTTGGTCGAATATTTTACTAGCTTAAGTGGTAGTTTTATTAACATATTTTTTGTTGGCTGTGTTTCTTGTTTCTT TCCCTGTTTCTAATTTTCGTTTTCTTTCTGTTTGTTTTCTACTAATATATGTTTGTCTAATATTGATGTATGGACCTAGG GTGCTGAACTTGGAGCAGATGAAGGAAAAAGTGCTGCTGCTTTGGCTGCATGCAGGACATTAGCTGAAGAACTGACTGAA TTCCGTTTTCCAGCTCCTCGTATCCTTGCTTTCAAGGTTTATTTTTCTTTACTATTCATACCAGTTTCAGCTTCTGCTTT ATAAGGTATACACTCTAACATACAGTTTACATTTGAAACAGGAGGGTAGCTCCCAAGCTCGATATTTTGTCTCTCGTCTC ATACCAGCTCACAAAGATCCTCCTTATGAGCAGGTGAACAGCCCTATCACTATATTCGTTATTGTGAAACTCATTAGACA TGTTGTTTGCCTCATTGATTTCACTTTTGTTTCCTGGTCCAAAAACCAGCGTCAATTTGAAGATTGGTATATTGACATTG AATAATGCTACTTTTGCAGGAGGCAAGATTCCCTCAACTCAGGACATTGACACAAGAAGCGCGGACAAAGCTGAAAAGCA GCTTTGTTCACTTCGACGATCCTAGCTTTTGTGAGTGGATGCGAAGTTTGAAAGTGGTGCCACCCCAACCGAGATGA
CDS sequence (LotjaGi1g1v0754600.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAACCCAACACAACCTAATGTTGGGTTCACCCCTTCAAACCCAGACAGACAGGGTCAAAACCCTGACAAGGGTCC AATTCCCCCACCTCTTAGTTTTGCAGCTGCACCTAGATTTCCTCCACCAAAATTACAGTTACATCAAGATCAAGCTTCTC CCCAACCCGGCAGTCCAGTTCCTCACCTGAGCACCCCTCCTGGACCCCCTGTCTTCTCGTCGCCCGTCCGTCCGGCTGCT GTTCCGTTTCGCACATCGCCTGCATCACCTCAGCCACTTGCTTTTTCGTCAAGCTCTTCTTTGCCAACGTCATCGTCGCC CCAATATTCCAATGGAGCATTTGATTTGCAGTCCCAAGTTTCTGATAGTATAGCGGACCATGCTCCTGTTGGGGAGTCAT CCTTTGTTCTTTTTTCAGCTCATAAGGTACTGAAACAGAAGAAACAAGCTAATGTGCCCAGTCTGGGTTTTGGGGCATTG GTCTCTCCTGGGAGGGAGGTCTCAACAGGCCCTCAGGTAATACAGCGTGATCCCCATCGCTGCCAAAGCTGTGGTGGTTA TGCAAATATATATTGCAACATACTACTTGGCTCGGGCCAGTGGCAGTGTGTTATATGTCGGAAACTGAATGGAAGTGGTG GTGAGTACGTTGCGGCTAGCAAGGAAGATCTTCACAGATTTCCAGAACTGTCTTCACCCATGGTTGACTATGTTCAAACT GGGAACAAGAGACCTGGTTTTGTTCCAGTTTCAGATTCCAGAATGTCTGCCCCAGTTGTTCTTGTAATAGATGAATGTTT AGATGAGCCTCACTTACACCATTTTCAGAGTTCTTTGCATGCTTTTGTTGATTCTCTCCCTCCAACAACAAGATTAGGAA TTGTACTATATGGCCGTACTGTATCAGTGTATGACTTCTCAGAAGAATCAATTGCATCTGCTGATGTGCTTCCCGGGGAT AAATCACCAAGTGAAGACTCTTTGAAAGCTTTGATTTATGGTACTGGCATATATTTGTCGCCCATGCATGCTTCATTACC TGTAGCACATTCCATATTTTCATCATTGAGAGCATATAAGTTGAACATACCTGAAGCTTCCAGAGATCGGTGCCTAGGAA CTGCTGTGGAGGTTGCTCTTGCTATAATTCAGGGCCCGTCAGATCTGTCCCGAGGGGTAGTCAAAAGGTCAGGGGGTAAT AGTAGAGTTATTGTCTGTGCTGGTGGACCGAACACTTATGGGCCTGGATCTGTTCCTCATTCTTTTAGTCACCCTAATTA TCCTTATATGGAAAAAACAGCATTGAAATGGATGGAGAATCTGGGTCGTGAGGCTCATCGACAAAATACTGTGGTTGATA TTTTATGTGCTGGAACATGCCCTGTAAGAGTTCCTATCTTACATCCTCTCGCAAAAGCATCAGGTGGAGTTTTTATTCTC CACGATGATTTTGGAGAAGCCTTTGGTGTTAATTTGCAAAGGGCATCAGCCAGATCAGCAGGCTCTCATGGACTGTTAGA ATTGCGAACATCAGATGATATTCTCATTACTCAAGTTGTGGGTCCTGGGGAAGAGTCACATGTAGACACCCACGAAACGT TTAAAAATGACACTGCTCTTTATATTCAGATGCTAAGTGTTGAAGAAACACAGTGCTTCTCTATCTCCATGGAAACCAAA GGGGATATCAAAAGCGATTTTGTCTTTTTCCAGTTTACTATTCAGTATTCAAATGTATATCAAGCTGATGTGTCCAGGGT CATTACTGTTAGACTGCCAACAGTAGATAGCGTTTCAGGATATCTTGAGAGTGTTCAGGATGAAGTGGCCGCTGTCCTCA TTGCAAAGAGAACTCTGTTACGAGCCAAAAACCAATCTGATGCAATTGATATGCGAGCAACAATAGATGAAAGAATTAAG GATATTGCTCTTAAATTTGGCTCCCAACTACCAAAATCAAAACTTCATTGCTTCCCAAAGGAGCTTTCTCTCTTACCTGA GATCCTTTTCCATCTCAGGAGAGGATCGCTATTGGGAAGCATTATTGGCCATGAAGATGAGAGGTCTGTGCTGAGGAACC TGTTTCTGAATGCATCCTTTGACCTATCACTCAGAATGGTGGCTCCTCGTTGTCTAATGCACAGGGAGGGGGGGACTTTT GAGGAGCTACCAGCTTATGATCTTGCAATGCAGTCTGATACTGCTGTTGTACTTGACCAGGGCACTGATGTCTTCATTTG GTTGGGTGCTGAACTTGGAGCAGATGAAGGAAAAAGTGCTGCTGCTTTGGCTGCATGCAGGACATTAGCTGAAGAACTGA CTGAATTCCGTTTTCCAGCTCCTCGTATCCTTGCTTTCAAGGAGGGTAGCTCCCAAGCTCGATATTTTGTCTCTCGTCTC ATACCAGCTCACAAAGATCCTCCTTATGAGCAGGAGGCAAGATTCCCTCAACTCAGGACATTGACACAAGAAGCGCGGAC AAAGCTGAAAAGCAGCTTTGTTCACTTCGACGATCCTAGCTTTTGTGAGTGGATGCGAAGTTTGAAAGTGGTGCCACCCC AACCGAGATGA
Protein sequence (LotjaGi1g1v0754600.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANPTQPNVGFTPSNPDRQGQNPDKGPIPPPLSFAAAPRFPPPKLQLHQDQASPQPGSPVPHLSTPPGPPVFSSPVRPAA VPFRTSPASPQPLAFSSSSSLPTSSSPQYSNGAFDLQSQVSDSIADHAPVGESSFVLFSAHKVLKQKKQANVPSLGFGAL VSPGREVSTGPQVIQRDPHRCQSCGGYANIYCNILLGSGQWQCVICRKLNGSGGEYVAASKEDLHRFPELSSPMVDYVQT GNKRPGFVPVSDSRMSAPVVLVIDECLDEPHLHHFQSSLHAFVDSLPPTTRLGIVLYGRTVSVYDFSEESIASADVLPGD KSPSEDSLKALIYGTGIYLSPMHASLPVAHSIFSSLRAYKLNIPEASRDRCLGTAVEVALAIIQGPSDLSRGVVKRSGGN SRVIVCAGGPNTYGPGSVPHSFSHPNYPYMEKTALKWMENLGREAHRQNTVVDILCAGTCPVRVPILHPLAKASGGVFIL HDDFGEAFGVNLQRASARSAGSHGLLELRTSDDILITQVVGPGEESHVDTHETFKNDTALYIQMLSVEETQCFSISMETK GDIKSDFVFFQFTIQYSNVYQADVSRVITVRLPTVDSVSGYLESVQDEVAAVLIAKRTLLRAKNQSDAIDMRATIDERIK DIALKFGSQLPKSKLHCFPKELSLLPEILFHLRRGSLLGSIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTF EELPAYDLAMQSDTAVVLDQGTDVFIWLGAELGADEGKSAAALAACRTLAEELTEFRFPAPRILAFKEGSSQARYFVSRL IPAHKDPPYEQEARFPQLRTLTQEARTKLKSSFVHFDDPSFCEWMRSLKVVPPQPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| MobiDBLite | 1 | 113 | 113 | - | – | |
| SUPERFAMILY | 20 | 605 | 586 | 1.83E-26 | – | |
| MobiDBLite | 23 | 38 | 16 | - | – | |
| PANTHER | 43 | 854 | 812 | 0.0 | ||
| PANTHER | 43 | 854 | 812 | 0.0 | – | |
| MobiDBLite | 59 | 76 | 18 | - | – | |
| MobiDBLite | 89 | 113 | 25 | - | – | |
| Gene3D | 167 | 231 | 65 | 3.4E-9 | – | |
| SUPERFAMILY | 168 | 242 | 75 | 1.24E-16 | ||
| Pfam | 178 | 211 | 34 | 1.8E-9 | ||
| CDD | 252 | 494 | 243 | 1.96751E-61 | – | |
| Gene3D | 258 | 502 | 245 | 3.0E-40 | ||
| SUPERFAMILY | 259 | 490 | 232 | 5.93E-37 | ||
| Pfam | 260 | 485 | 226 | 8.1E-12 | ||
| Pfam | 503 | 594 | 92 | 6.9E-11 | ||
| SUPERFAMILY | 607 | 707 | 101 | 3.66E-24 | ||
| Gene3D | 607 | 707 | 101 | 3.5E-21 | – | |
| Pfam | 608 | 704 | 97 | 4.8E-11 | ||
| Gene3D | 708 | 800 | 93 | 3.5E-21 | ||
| SUPERFAMILY | 709 | 849 | 141 | 8.37E-28 | ||
| CDD | 709 | 800 | 92 | 4.58942E-15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | ER to Golgi vesicle-mediated transport | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Cellular component | COPII vesicle coat | One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state. |
Expression pattern of LotjaGi1g1v0754600.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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