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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0038800 |
| Transcript ID | LotjaGi6g1v0038800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein transport protein SEC23; TAIR: AT5G43670.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q4PE39|SEC23_USTMA Protein transport protein SEC23; TrEMBL-Plants: tr|G8A123|G8A123_MEDTR Protein transporter Sec23-like protein; Found in the gene: LotjaGi6g1v0038800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:7544073..7547855) extracted from Lotus japonicus Gifu genome v1.2.
ACACATTATTTTTTTTTATCATTAAAAATTTATCATATATTAAATTTCTTTAAAAAAAGATGTGTTGACCTGTTATAGCA GGTTAAAAAAAGTGGTATAAAATTAGACCACTTCACACTAGGGTTCACCTAATTTTAACACACACCTTGGATCGAGGTTT AACAGAATGTGTGTTGGTGAGGGAAAGAATCTCATTTCAAGCTTGCCGCCGGCCTTGGCAAGGAGGAAACCCGTACTTGA CTGTTTGATTCCTTTAAAACTAAATCTATCAACCTGACTCGCTGACTGACTCAGTGAGCGAGTCACTCGATCGAATGGAT TTCGTGGAATTGGAGGCGGTTGAAGGCCTCCGTTGGTCATGGAATTCATGGCCGGCGGCGCCGTCGTCGAAATCGGAGCT GATAATCCCACTCAGCATCATGTGCACTCCATTGATGCAAGGCCCGGAGATGCCGCTTCTCCCCTACGATCCCCTCAGTT GCACCGGATGCGGCGCCGTTTTGAACCCTTACGCTCGCCTCGACTACCAGTCACGCATCTGGCACTGCCCCTTCTGCTCG CGCCGGAACCCTTTCCCTCGCTCCATCGCCGACGCCGATACCAATCTCCCCGCCGAGCTCTTCCCTACCTACACCACCGT GGAGTACTCTTCCTCTTGCTCTTCCCTTCATCTTCTTCCCAACGCTGGGGCTGGGAGTGTTGCTGCACCCGCTTTTGTGT TTGTTATCGATATCTCCACTCCTGAGGATGAACTGCGATTCCTCAAGAATGAACTCTTGCTTCTCCTCCACCGTTTGCCA GATAACGCCCTTGTCGCCTTGGTTACCTTCGATTCCATGGTGTATCTCCACGATCTCCAATATTCCCACTGCTCAAGGCT TGTCATCTTTCACGGTCACCGCCAACTTTTCTCCGATCAGGTTCATAAATGCTTATGCCAATTTTATTGAAAATGGTTCA AATTCTTATAGCTACGTTTTAGGTGCTAATTCATAAGTTTTTATGAGAAACTCATCAAAATTAGGGTGTGTGTATGGGTA GAGTGATTAATTAAGTGCTTATGTCCATGAATATTCACATAAGTGCTTATTCATAACTTAATTTGATAAACTTATCGAAG TGAACTCGAAAGACCAAATAAGTAGGTTTAAGTGCTTATTCATAAGCTAATTTGATAAACTGAACATCTGCTTAAGTGCT TAAGCTATAAAATAAGTTCAAACAAGCTCTAATAAACGGACCCTAAATTCAACAGAGCTTATAGGTAAGTCTTAAACTAT TTTCATAAGCTTAAACAAACACTTGCTTAAGTGTTTTGACTGTTTATACTAAAGATATTAGATGAGCTCAAATAAGTTCT TACAAATGCACCCTATGTTATATTAGAGTAAGGCCCAGTTTGGATTCACTTCTCGTTTAATGGAGCTTCTTAATTGAGAT AAGTAGTTTGATGATTTAGTCTTCACTTATAATTATAGGTGCTTATTGACAAATTATGTAAGGAAGCTATAGAAAAAGTT GAGGTGCATAACTTGATTTCGATCTTTTCAACTTTTCTTTACACAAAAATGCTTGTTGAAAAATGTTAGTTACTCAAGTG CTTGGTATATAATACTAGGTAGGTTTAGGATTCAATTTGATTGAGTGCTATCTGTAGTCTTTATGTTTGTCTGACTTTTT GTTTGGTATGTTTTGTTTCTTCTTAGATCCGAAAGTTTCTTAACATTAGCCGTCCCCACCAGCTGCATCTTGGGCAAATA CCATCCATCCCCAAGCAGGGATTTCTGGTGTCAATTTCAGAATGTGAGTTCAGTATCACTGCTGCAATTGAAGACATCCA TTCTACAAGCAACTTCAGGCCTGGCTGCCGCCCACCAAGGTGCACAGGGGCTGCAGTTTCAGCAGCCCTTGGACTTCTGG AGTGTTGCCTCATAAACACAGGCTCCAGGATCATGGTCTTCACATCTGGACCTGCTACTGTAGGCCCAGGACTGGTTGTA GACACTGACATCCGCCAGGCCATGAGAACCCACCATGACATCTTCAGTGGGCGGTCAAGACACCATCCAAAATCTTGCAG TTTCTACCAGCAGATCTCCAAGAGGCTCTCTGATGCATCTGTTGTCCTTGATCTGTTTGCTTGCTCCCTTGACCAAGTCG GAGCAGCTGAGCTTCGAGAACCTGTTGAGCAGTCGGGTGGACTTGTGATTCTTGCCGACTCTTTTGAATCGGATCAATTC AGGAAATGTCTTAGTCACCTGTTTGAACGCAATGACGAGGGTTATTTGAAGATGAACTTTGATGCGACCATTGAAATAGT GACCACTAAAGATGTGAAAATTTGTGGAGCTCTTGGTCCTTGTGTGTCTCTTAGAAAAAACAACAGTTTGGTAAGTGAGT CCGAGGTTGGACAAGGTGGTACCTGCGTGTGGAAGTTGAATACAATCACTGACAGAACTTGCATTGCCTTTTTCTTCCAA GTGAATGATGAGCAGAAAGTTCAACCCGGCTCTGCCTTTCTGATTCAGTTTATCACACGGTACAGGCAGGGGAACATGGG GCCTCGAAAACGAGTCACCACTGCTGCTAGACGATGGGTTGCAAGTGATTCCACTGATATTGCTGCTGGCTTTGATCAAG AAGCCGCAGCTTCAGTTATGGCAAGACTTGCTATTCTCAGGGCAGAGACATGCTATGCTCGAGATGTCATTAGATGGCTT GATGACCAACTAATTCGTTTTTCATCCAAGTTTGGGGACTATGTGCCAGAAGATCCTTCTTCCTTCCGCTTATCTTCCAT CTTTTCCCTTTATCCTCAGTTTATGTTCCACTTGAGGCGATCTCAATTTATTGACGTGTCTAACACTACTCCTGATGAAA CTGCATATTTCCGGGTTATGCTGAACCGTGAGGGTGTAGTTGGTTCTCTTATAATGATTCAACCTACACTGTTCCAATAT TCTTTTGATGGGCCACCTGTTCCAGTACTCCTTGACATTCGTTCTATTTGTCCGGATTCCATCTTGCTCTTTGATTCTTT CTTCCATGTTGTGATTCATTATGGGTCCAAGGTCACTCACTGGAGGAAGGTCGGTTATGATAAGGACCCAAATCATGAGA ACTTTAGAAAGCTGCTGGAAGCCCCAGAACTGGATGCAGAGCAATTGGTGGCTGAACGGGTTCCAGTGCCGAAATTTATA AGATGTGACCAGTATAGTAGTCAAGCTAGGTTTCTTCTTGCCAAATTGAATCCATCTGTTACTCAAAATTCAACTTACAC AGAAGGTTCGGATATTATCTTCACCGATGATTTGAGCTTAGAAATTTTTCTAGATCAATTGCAGGTACTGGCAGTGCAAG GCTGATAAAGGAGCATTTTGTTAAAGCATATTCTTTTCTATTACATGAAATTTGTAAGTAGTTTTCAGAGAAGAGTTATC ATGTTTTCGGCATATAGTGTTCCCCTGTTTCCTTACGAGTTGTAAAATATCTGATTTCTTTAGTGTGATTAAGAATATGG TTTTGTCTTGTAGACTAGTTTTTAAGATGTAACGTAGTCCATATTACACTGACTAGAAGCTGTATTATCCTCTAGTTTCT TGCCTATACTGTAAATATCACATGATGTTATCAAATGAATGATTAAAGCTGTGCTCTGTTTCATAGCTTTTTTAATTTAT GTTTTTCCTTCATGGTGGCGAACAAGTCTCCTAGTTGGAACTTTGATACAGCAATATGTTGCTAGCGGTCATAAAGGAGT ATTGCATTTATTTTATTTTATTT
CDS sequence (LotjaGi6g1v0038800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTCGTGGAATTGGAGGCGGTTGAAGGCCTCCGTTGGTCATGGAATTCATGGCCGGCGGCGCCGTCGTCGAAATC GGAGCTGATAATCCCACTCAGCATCATGTGCACTCCATTGATGCAAGGCCCGGAGATGCCGCTTCTCCCCTACGATCCCC TCAGTTGCACCGGATGCGGCGCCGTTTTGAACCCTTACGCTCGCCTCGACTACCAGTCACGCATCTGGCACTGCCCCTTC TGCTCGCGCCGGAACCCTTTCCCTCGCTCCATCGCCGACGCCGATACCAATCTCCCCGCCGAGCTCTTCCCTACCTACAC CACCGTGGAGTACTCTTCCTCTTGCTCTTCCCTTCATCTTCTTCCCAACGCTGGGGCTGGGAGTGTTGCTGCACCCGCTT TTGTGTTTGTTATCGATATCTCCACTCCTGAGGATGAACTGCGATTCCTCAAGAATGAACTCTTGCTTCTCCTCCACCGT TTGCCAGATAACGCCCTTGTCGCCTTGGTTACCTTCGATTCCATGGTGTATCTCCACGATCTCCAATATTCCCACTGCTC AAGGCTTGTCATCTTTCACGGTCACCGCCAACTTTTCTCCGATCAGATCCGAAAGTTTCTTAACATTAGCCGTCCCCACC AGCTGCATCTTGGGCAAATACCATCCATCCCCAAGCAGGGATTTCTGGTGTCAATTTCAGAATGTGAGTTCAGTATCACT GCTGCAATTGAAGACATCCATTCTACAAGCAACTTCAGGCCTGGCTGCCGCCCACCAAGGTGCACAGGGGCTGCAGTTTC AGCAGCCCTTGGACTTCTGGAGTGTTGCCTCATAAACACAGGCTCCAGGATCATGGTCTTCACATCTGGACCTGCTACTG TAGGCCCAGGACTGGTTGTAGACACTGACATCCGCCAGGCCATGAGAACCCACCATGACATCTTCAGTGGGCGGTCAAGA CACCATCCAAAATCTTGCAGTTTCTACCAGCAGATCTCCAAGAGGCTCTCTGATGCATCTGTTGTCCTTGATCTGTTTGC TTGCTCCCTTGACCAAGTCGGAGCAGCTGAGCTTCGAGAACCTGTTGAGCAGTCGGGTGGACTTGTGATTCTTGCCGACT CTTTTGAATCGGATCAATTCAGGAAATGTCTTAGTCACCTGTTTGAACGCAATGACGAGGGTTATTTGAAGATGAACTTT GATGCGACCATTGAAATAGTGACCACTAAAGATGTGAAAATTTGTGGAGCTCTTGGTCCTTGTGTGTCTCTTAGAAAAAA CAACAGTTTGGTAAGTGAGTCCGAGGTTGGACAAGGTGGTACCTGCGTGTGGAAGTTGAATACAATCACTGACAGAACTT GCATTGCCTTTTTCTTCCAAGTGAATGATGAGCAGAAAGTTCAACCCGGCTCTGCCTTTCTGATTCAGTTTATCACACGG TACAGGCAGGGGAACATGGGGCCTCGAAAACGAGTCACCACTGCTGCTAGACGATGGGTTGCAAGTGATTCCACTGATAT TGCTGCTGGCTTTGATCAAGAAGCCGCAGCTTCAGTTATGGCAAGACTTGCTATTCTCAGGGCAGAGACATGCTATGCTC GAGATGTCATTAGATGGCTTGATGACCAACTAATTCGTTTTTCATCCAAGTTTGGGGACTATGTGCCAGAAGATCCTTCT TCCTTCCGCTTATCTTCCATCTTTTCCCTTTATCCTCAGTTTATGTTCCACTTGAGGCGATCTCAATTTATTGACGTGTC TAACACTACTCCTGATGAAACTGCATATTTCCGGGTTATGCTGAACCGTGAGGGTGTAGTTGGTTCTCTTATAATGATTC AACCTACACTGTTCCAATATTCTTTTGATGGGCCACCTGTTCCAGTACTCCTTGACATTCGTTCTATTTGTCCGGATTCC ATCTTGCTCTTTGATTCTTTCTTCCATGTTGTGATTCATTATGGGTCCAAGGTCACTCACTGGAGGAAGGTCGGTTATGA TAAGGACCCAAATCATGAGAACTTTAGAAAGCTGCTGGAAGCCCCAGAACTGGATGCAGAGCAATTGGTGGCTGAACGGG TTCCAGTGCCGAAATTTATAAGATGTGACCAGTATAGTAGTCAAGCTAGGTTTCTTCTTGCCAAATTGAATCCATCTGTT ACTCAAAATTCAACTTACACAGAAGGTTCGGATATTATCTTCACCGATGATTTGAGCTTAGAAATTTTTCTAGATCAATT GCAGGTACTGGCAGTGCAAGGCTGA
Protein sequence (LotjaGi6g1v0038800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFVELEAVEGLRWSWNSWPAAPSSKSELIIPLSIMCTPLMQGPEMPLLPYDPLSCTGCGAVLNPYARLDYQSRIWHCPF CSRRNPFPRSIADADTNLPAELFPTYTTVEYSSSCSSLHLLPNAGAGSVAAPAFVFVIDISTPEDELRFLKNELLLLLHR LPDNALVALVTFDSMVYLHDLQYSHCSRLVIFHGHRQLFSDQIRKFLNISRPHQLHLGQIPSIPKQGFLVSISECEFSIT AAIEDIHSTSNFRPGCRPPRCTGAAVSAALGLLECCLINTGSRIMVFTSGPATVGPGLVVDTDIRQAMRTHHDIFSGRSR HHPKSCSFYQQISKRLSDASVVLDLFACSLDQVGAAELREPVEQSGGLVILADSFESDQFRKCLSHLFERNDEGYLKMNF DATIEIVTTKDVKICGALGPCVSLRKNNSLVSESEVGQGGTCVWKLNTITDRTCIAFFFQVNDEQKVQPGSAFLIQFITR YRQGNMGPRKRVTTAARRWVASDSTDIAAGFDQEAAASVMARLAILRAETCYARDVIRWLDDQLIRFSSKFGDYVPEDPS SFRLSSIFSLYPQFMFHLRRSQFIDVSNTTPDETAYFRVMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSICPDS ILLFDSFFHVVIHYGSKVTHWRKVGYDKDPNHENFRKLLEAPELDAEQLVAERVPVPKFIRCDQYSSQARFLLAKLNPSV TQNSTYTEGSDIIFTDDLSLEIFLDQLQVLAVQG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 753 | 753 | 0.0 | – | |
| PANTHER | 1 | 753 | 753 | 0.0 | ||
| SUPERFAMILY | 2 | 511 | 510 | 3.66E-48 | – | |
| Gene3D | 7 | 497 | 491 | 2.1E-160 | – | |
| SUPERFAMILY | 44 | 112 | 69 | 1.26E-17 | ||
| Gene3D | 50 | 109 | 60 | 2.1E-160 | – | |
| Pfam | 53 | 89 | 37 | 3.7E-13 | ||
| Pfam | 131 | 390 | 260 | 1.8E-54 | ||
| Gene3D | 132 | 399 | 268 | 2.1E-160 | ||
| SUPERFAMILY | 132 | 390 | 259 | 1.11E-67 | ||
| Pfam | 400 | 500 | 101 | 2.7E-22 | ||
| Gene3D | 507 | 751 | 245 | 3.0E-101 | – | |
| SUPERFAMILY | 512 | 614 | 103 | 8.89E-41 | ||
| Pfam | 512 | 607 | 96 | 1.4E-21 | ||
| CDD | 604 | 724 | 121 | 1.14413E-63 | ||
| Gene3D | 614 | 718 | 105 | 3.0E-101 | ||
| SUPERFAMILY | 615 | 753 | 139 | 4.97E-49 | ||
| Pfam | 626 | 712 | 87 | 7.4E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | ER to Golgi vesicle-mediated transport | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Cellular component | COPII vesicle coat | One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state. | ||
| Biological process | COPII-coated vesicle budding | The evagination of an endoplasmic reticulum membrane, resulting in formation of a COPII-coated vesicle. |
Expression pattern of LotjaGi6g1v0038800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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