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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2241210 |
| Transcript ID | Lj5g3v2241210.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: protein transport protein Sec24-like At4g32640-like [Glycine max] gi|356534416|ref|XP_003535751.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 264 | 264 | – | – | |
| PANTHER | 22 | 175 | 154 | 0 | – | |
| PANTHER | 22 | 175 | 154 | 0 | – | |
| PANTHER | 201 | 268 | 68 | 0 | – | |
| PANTHER | 201 | 268 | 68 | 0 | – | |
| SUPERFAMILY | 213 | 382 | 170 | 7.85E-73 | – | |
| PANTHER | 302 | 1063 | 762 | 0 | – | |
| PANTHER | 302 | 1063 | 762 | 0 | – | |
| SUPERFAMILY | 384 | 470 | 87 | 2.49E-26 | ||
| Pfam | 397 | 435 | 39 | 2.10E-16 | ||
| Pfam | 472 | 712 | 241 | 7.20E-80 | ||
| SUPERFAMILY | 472 | 714 | 243 | 5.19E-66 | ||
| CDD | 472 | 716 | 245 | 1.73E-108 | – | |
| Gene3D | 474 | 714 | 241 | 1.40E-98 | ||
| SUPERFAMILY | 716 | 810 | 95 | 7.85E-73 | – | |
| Pfam | 717 | 801 | 85 | 1.50E-21 | ||
| Pfam | 812 | 908 | 97 | 5.10E-20 | ||
| SUPERFAMILY | 812 | 915 | 104 | 1.83E-24 | ||
| SUPERFAMILY | 916 | 1058 | 143 | 1.99E-29 | ||
| Gene3D | 916 | 1054 | 139 | 5.60E-40 | ||
| Pfam | 932 | 1003 | 72 | 2.40E-05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | ER to Golgi vesicle-mediated transport | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Cellular component | COPII vesicle coat | One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state. |
Expression pattern of Lj5g3v2241210.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2241210.2, powered by CORGI.
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