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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2905160 |
| Transcript ID | Lj3g3v2905160.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Exosome complex exonuclease RRP6 [Medicago truncatula] gi|357471299|ref|XP_003605934.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 221 | 221 | 2.20E-303 | – | |
| Pfam | 1 | 107 | 107 | 8.70E-29 | ||
| PANTHER | 1 | 221 | 221 | 2.20E-303 | – | |
| SUPERFAMILY | 2 | 132 | 131 | 3.42E-42 | ||
| Gene3D | 3 | 110 | 108 | 1.30E-06 | ||
| ProSiteProfiles | 171 | 251 | 81 | 9.174 | ||
| SUPERFAMILY | 173 | 257 | 85 | 9.68E-12 | ||
| Pfam | 178 | 218 | 41 | 5.70E-06 | ||
| PANTHER | 237 | 261 | 25 | 2.20E-303 | – | |
| PANTHER | 237 | 261 | 25 | 2.20E-303 | – | |
| PANTHER | 362 | 561 | 200 | 2.20E-303 | – | |
| PANTHER | 362 | 561 | 200 | 2.20E-303 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Nucleobase-containing compound metabolic process | Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. | ||
| Molecular function | 3'-5' exonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end. | ||
| Biological process | Cellular metabolic process | The chemical reactions and pathways by which individual cells transform chemical substances. |
Expression pattern of Lj3g3v2905160.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2905160.1, powered by CORGI.
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