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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0155200 |
| Transcript ID | LotjaGi5g1v0155200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase II, Rpb4, core protein; TAIR: AT5G62950.1 RNA polymerase II, Rpb4, core protein; Swiss-Prot: sp|O35427|RPC9_MOUSE DNA-directed RNA polymerase III subunit RPC9; TrEMBL-Plants: tr|I3SAG6|I3SAG6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0155200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:40196342..40200423) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATCATAATCTTTCCACTCTCCTCCCATTCCAAAACACGATCAACAAAAACCCAAAAGCCAGAGAGAAGACAACAAC AGATCTGAAGAGATTGAACTTGAAGGGTGAAGAAGAGACAGAAGTGACGAACTGACGAACTCATCTCAGTTCTCACTTCT CACGGTCAAAGTCTCAGAGGAAGAGAACACATGAAGAAGGGAAGATAGAGGTTTCTGAGTTGAATCTAAGAAAAAGCTGA AATTTGGTACAAGATTCTCCAATTCTCCTTTGATTCTCCTCTGATTCTCTCTAAAATTGATTCTGAAAAGAATAAGTCAC GGCAGTAACGGCGTTACAAGGCTCTGTAACGCCTCTGTTTCTGCATAGCACCGAGAAATCGTTCCGTATCGGTAACGTTC CTCGCCGTTACCGCAACATATCGTTCCGATATTTAGAACCTTGCCTAATACCTCTGATTCTCAATCTCACTGAAAATTGA ATTTTGAATTCTGCAATTGTTACTCTACTCATGTATTTGCCTTTGTTGTAGAATTGAAGCAGAGACTTTCTTGTCATTGT TACTGCTATTGCAGCAGTCTCTGGTTTCTTCAAGATGAAAATGTATGCCTCCCTGCCTATTCTTTTTGGTTTCCAACATT AATTCATACATACACATTTGTAAGATTCTTTGTCTCTCTGTTTTGGAACATGTTTGATTGATGTTTAGTAATTTTGTCAT AGCTTAGAGGCCAATGCCGGCGTGCTCACGAATTTTGAGGTCCTTGATTTCTTACGAGCAAAAGGAGCTTCGAAAGATCC AACAAGAGTTATTGCCAAAGTAACACAATCTGAATACAAGGTTAGGTTTGTTAATGATATATAAGTATATAACCTATTTT GTGGTGAAATTTAAGTTTTTGATAATAGGTTGGTTTATTTGTTGATGACTGTGTTGCATATTCTCTAACAGGTTTATGAT TACTTGGTTAATACTGCTGCATCTATTCAAACAAGGGTGAACACGGATGAGTTCTTGAGAAAGATTAAACTGCATGACCT TGCACCAGCTGAGATTCTGAACATGATAAACACTAGGCCAGCTGCTGCTGTTGAACTATTCCCGGTAAGTATCAAAATTT TGTTTGAGTTTTTCATTTATTTGACAGTTGAGTATTCAGCTAGAAGTTACCTCAGTTCTGTATTGCTTTTAGTTTTACTC ACATTATCTGCAATGTGTTTTCTCTGTTATTTGTCTTTAGCTTTGAATTATTGGGTTTGAAGTTGTGTTGTACACGTGTT AGCAGTAACATATAAACAATACAAATTTTGTGAGAATGAATAGGTATTATAACATAACTCCTACTTTTGTAAGATGACAA AAACGATGAAATCCTTTTTCCAACTAGTGAGGAAATGACTTGTCAAGTTATATGCTACTACCATAATTCAAACTTAGTGT AATTCATGCTTTTTAATGACTAAAATATTTACACAGCTGTGGTTTTACCAAAATATAATTTGGTTATATATAAGCAACTG TTTTAGGTAGGAACAAGTTTGGAAACCTGCTTTTCTAATAACTTTGAAGGTGGAGAAAAAAAAATCAAGTAACTAGTTAT ACCTCAATCCATATACCAGGCCTAATAGCATAGTTAGTTGGTTACGTAATAGCTTAGTTGGTTAGTTTAGGTAGTTAGAG AGTGAGAGAGATTTTATAAATCAATGAAAGTTCAGGGAGAGACTTTACCTTATCATTAGTGCTGTTACTGGGAATTGGGA GAGGATGACATTGAGGCTTGTTGCCTCTTCCTCTAGAATTTCCAATTGTAGATCTGCCTCATTTGTTGGAGTATCTTCCA TGGCCTCTATTGAACTGCTGTAGTTGAACTAAGTTTGCAATAGCTTACATTGAAAATGCATTGGTATTCTTATGTTTTTC TATTTGCTCTTCTTGGGCAATCAACAAAGCTTCGATCCCAGCAATAGAATAGGGTTTATTTTGTGACATTAAACAGATCA TACTCATCAGGTAGTGCATCAAGAACCACCTCAATGTGTTCTGCTGGATTATTAGAGATCATACAGCAGCTAGCATATCA ACGATTTAGGTGTAATTTTAGTGGCTTCACTTTTGCTCGAGTTTGAGAAACAAAGTATACACCTCAAATTTATTCCAGGT CTGAAATGAATAGTTACAACCAAACATTCTTGTTGTGAGACTCTTATGACATTGATGCTAGCAATCAGGAGAGCAGAGGC TGATTTGTTGCTCACAGTTTGTATACTCTTCATTGACTCTACCGAGCACTTCATCTTCCTCATTCGAAAATTCAGGTGGT CTTCTTCTCAATGGTGTAATTTATTGCTGCGATTTGTGTCTTCTCATCAGTCCTATAACCTGTTGCTCCCATAGTAGAAA GTTCCCATCCAGCTTAAAACTGCATTGGAGAAGGTTTGGGCTATGATTTGGAGTGGAGACACCTAAGGTCAAATCTGTTT GTTATTAAAGGGTCAGAACGGTATAGCTCTTATACCGTGGGGTATCTCAACTCTGAGAAATTGAGAATCTAGGGAGAAAA GAGAGAAACGAGAGAATAAAAAAGAGTGCGAAGAAGAAACTAGGTGTGATTTCTGTTCAACTTATTTCATACGGGCCTGT ATATGAAGGTTATTGCAGATATTTGATTCTGTTACTAACTGAAGCTAACTTGTTTCTAACTAGGTCAAAAGAATAATTAA GCAAATTACATGAGATTTACTCTCATTTTTTGAATTAAACATCGACTTCTAAATTTGATTTTAAAAACTTGATTACATTC AGACAAGCAGTCTATGACCCTAAAAAGTTTATGGTTTCTAATTAGTGGTTTATATGTGAGCGACAATCAAAATATCCTTT GATTTTCTGTTATAAAAGCACTTAACAAGTTATGCTGCATGGGCTCCTTGCATCCATTTGTAATCTGAAACAACATTGAT TCCTTGGCCTCATGATGTGATATCTTATCACCCATGTTAATCCTTGGATTTTACTACTCAATACTACTGAGAAATGATTT CCACGACTGTATTTCACAATTCATTTGTGATTAAGACCACTGGTCATATATAAGAAGGAGCATTTGTTACTAGTTTTTAG GTTGGTCTCTAGTTTGCAACCACTAAGGAATTTTGCTTACATGCTTTAATCAACTGTATAATATGCCGTTTCAAACTTCA AAGATATCAAGAAATGTAACCTGCACTTCAAACACAAAGGCTTTGGCTTTGGTTTTGGGCATCGGGGATAATGACTTCTG TAGACCTGTTCATAATTTATCGGCAAATTTTGCAGTAGTTTTTGTGTATTTAAACTTGGAATAAGCTCTTTAGAGATTTT CATTCTTCAGGAGCAATGTGGGCTATTATCTATGCCCGCTTTTACATTCTAGAGTGACTTAAACTGATTATCATATATTT TATTTTGAGTGCTATGTCTTCTTCAATATTATGTTGATACCCTCGTGTCACTGTAATCGTCATTCTAACTTTTATTACAC AGATCATAGAGGAATGTGAGTCCCGTTTTCCAGATGAAATGGTTGAAGAATTAGCAGAGCTGGTCAAGAAAACATTGCTG GGGCCGCCTGCCAAAAAGAAACCGGAAGAAATCACTGAGGGCAATGAAGAAATGGCAACACTGAAACAGGAAAAAGATAA TGAGAATCCGGAAGAAACCAGTGAGGGCAATGAAGAAACAGCAACCCTGAAACATGAAAAAGGAAACGAGATTAATGAAG GTGCAGAACAAATGGACAAAAGTTGAGATCCTTATTGCGACCATAGTATTTTATGAGTAGCGCCAGAGTACAATGGAATT TTTCAATCCTCTATAACAATGCCATTTGGTTTTGTATATGGTTAGCTCCTTTTCTTAAATCTTTTTAGTATACAATTGAA AGAAAGAGAAAACTATCAATTCTACGCAATTGTTACTCACAATCAAAATTCTAGGCAATTGTTATTGATAAGATGTTCAT CTAATTAGTTTTCCCATTATAAATTGGTACAACACTTTCAATTTATTCTGCATTAAATTTTTATATATAGACTACAGTTT GG
CDS sequence (LotjaGi5g1v0155200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAATCTTAGAGGCCAATGCCGGCGTGCTCACGAATTTTGAGGTCCTTGATTTCTTACGAGCAAAAGGAGCTTCGAA AGATCCAACAAGAGTTATTGCCAAAGTAACACAATCTGAATACAAGGTTTATGATTACTTGGTTAATACTGCTGCATCTA TTCAAACAAGGGTGAACACGGATGAGTTCTTGAGAAAGATTAAACTGCATGACCTTGCACCAGCTGAGATTCTGAACATG ATAAACACTAGGCCAGCTGCTGCTGTTGAACTATTCCCGATCATAGAGGAATGTGAGTCCCGTTTTCCAGATGAAATGGT TGAAGAATTAGCAGAGCTGGTCAAGAAAACATTGCTGGGGCCGCCTGCCAAAAAGAAACCGGAAGAAATCACTGAGGGCA ATGAAGAAATGGCAACACTGAAACAGGAAAAAGATAATGAGAATCCGGAAGAAACCAGTGAGGGCAATGAAGAAACAGCA ACCCTGAAACATGAAAAAGGAAACGAGATTAATGAAGGTGCAGAACAAATGGACAAAAGTTGA
Protein sequence (LotjaGi5g1v0155200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKILEANAGVLTNFEVLDFLRAKGASKDPTRVIAKVTQSEYKVYDYLVNTAASIQTRVNTDEFLRKIKLHDLAPAEILNM INTRPAAAVELFPIIEECESRFPDEMVEELAELVKKTLLGPPAKKKPEEITEGNEEMATLKQEKDNENPEETSEGNEETA TLKHEKGNEINEGAEQMDKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 124 | 124 | 1.4E-21 | ||
| Gene3D | 1 | 119 | 119 | 7.2E-25 | ||
| PANTHER | 1 | 143 | 143 | 1.2E-46 | ||
| SUPERFAMILY | 4 | 117 | 114 | 1.05E-18 | ||
| Pfam | 11 | 117 | 107 | 1.5E-17 | ||
| MobiDBLite | 121 | 180 | 60 | - | – | |
| MobiDBLite | 121 | 149 | 29 | - | – | |
| MobiDBLite | 156 | 180 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Cellular component | RNA polymerase III complex | RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. | ||
| Biological process | DNA-templated transcription, initiation | Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription. | ||
| Biological process | Transcription initiation from RNA polymerase III promoter | Any process involved in the assembly of the RNA polymerase III preinitiation complex (PIC) at an RNA polymerase III promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. | ||
| Cellular component | RNA polymerase complex | Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits. | ||
| Biological process | Cellular metabolic process | The chemical reactions and pathways by which individual cells transform chemical substances. |
Expression pattern of LotjaGi5g1v0155200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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