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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013767
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 16 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.896s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0046839.1
n.a. PREDICTED: phytochrome type A-like [Glycine max] gi|356572880|ref|XP_003554593.1| chr0 15593051 15597615 +
2 domain predictions
1 GO term
Lj0g3v0353829.1
n.a. Tyrosine protein kinase [Medicago truncatula] gi|357478991|ref|XP_003609781.1| chr0 186291116 186294740 +
2 domain predictions
1 GO term
Lj4g3v2265030.1
n.a. phytochrome b [Lotus japonicus] gi|121309520|dbj|BAF44083.1| chr4 31439564 31445894 +
2 domain predictions
1 GO term
Lj4g3v2295880.1
n.a. phytochrome E, partial [Lotus japonicus] gi|477504399|dbj|BAN14709.1| chr4 32017732 32020941 +
2 domain predictions
1 GO term
Lj5g3v1533480.1
n.a. phytochrome A [Lotus japonicus] gi|477504379|dbj|BAN14699.1| chr5 22502927 22510099 -
2 domain predictions
1 GO term
Lj6g3v1093490.1
n.a. PREDICTED: phytochrome E-like [Glycine max] gi|356532946|ref|XP_003535030.1| chr6 13394709 13400674 -
2 domain predictions
1 GO term
LotjaGi4g1v0331600.1
n.a. Kinase family protein; TAIR: AT3G06620.1 PAS domain-containing protein tyrosine kinase family protein; Swiss-Prot: sp|Q9FPR3|EDR1_ARATH Serine/threonine-protein kinase EDR1; TrEMBL-Plants: tr|I1KMQ9|I1KMQ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0331600 LjG1.1_chr4 71064011 71084080 +
2 domain predictions
1 GO term
LotjaGi5g1v0235100.1
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323062 54330218 -
2 domain predictions
1 GO term
LotjaGi5g1v0235100.2
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323402 54328628 -
2 domain predictions
1 GO term
LotjaGi5g1v0235100.3
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323402 54328849 -
2 domain predictions
1 GO term
LotjaGi5g1v0235100.4
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323402 54328859 -
2 domain predictions
1 GO term
LotjaGi6g1v0210900.1
n.a. Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|V7AY23|V7AY23_PHAVU Phytochrome; Found in the gene: LotjaGi6g1v0210900 LjG1.1_chr6 50829966 50836297 -
2 domain predictions
1 GO term
LotjaGi6g1v0210900.2
n.a. Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|N0DK27|N0DK27_LOTJA Phytochrome E; Found in the gene: LotjaGi6g1v0210900 LjG1.1_chr6 50831797 50836297 -
2 domain predictions
1 GO term
LotjaGi6g1v0210900.3
n.a. Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|V7AY23|V7AY23_PHAVU Phytochrome; Found in the gene: LotjaGi6g1v0210900 LjG1.1_chr6 50832024 50836033 -
2 domain predictions
1 GO term
LotjaGi6g1v0258900.1
n.a. Phytochrome; TAIR: AT2G18790.1 phytochrome B; Swiss-Prot: sp|P42499|PHYB_SOYBN Phytochrome B; TrEMBL-Plants: tr|A1IIA2|A1IIA2_LOTJA Phytochrome; Found in the gene: LotjaGi6g1v0258900 LjG1.1_chr6 57180524 57188840 +
2 domain predictions
1 GO term
LotjaGi6g1v0259000.1
n.a. Kinase family protein; TAIR: AT3G06620.1 PAS domain-containing protein tyrosine kinase family protein; Swiss-Prot: sp|Q9FPR3|EDR1_ARATH Serine/threonine-protein kinase EDR1; TrEMBL-Plants: tr|G7IFW1|G7IFW1_MEDTR PAS domain tyrosine kinase family protein; Found in the gene: LotjaGi6g1v0259000 LjG1.1_chr6 57190174 57207504 +
2 domain predictions
1 GO term