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PAS fold
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: phytochrome type A-like [Glycine max] gi|356572880|ref|XP_003554593.1| | 38 | ||
| – | Tyrosine protein kinase [Medicago truncatula] gi|357478991|ref|XP_003609781.1| | 13 | ||
| – | Phytochrome b [Lotus japonicus] gi|121309520|dbj|BAF44083.1| | 44 | ||
| – | Phytochrome E, partial [Lotus japonicus] gi|477504399|dbj|BAN14709.1| | 26 | ||
| – | Phytochrome A [Lotus japonicus] gi|477504379|dbj|BAN14699.1| | 40 | ||
| – | PREDICTED: phytochrome E-like [Glycine max] gi|356532946|ref|XP_003535030.1| | 40 | ||
| – | Kinase family protein; TAIR: AT3G06620.1 PAS domain-containing protein tyrosine kinase family protein; Swiss-Prot: sp|Q9FPR3|EDR1_ARATH Serine/threonine-protein kinase EDR1; TrEMBL-Plants: tr|I1KMQ9|I1KMQ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0331600 | 26 | ||
| – | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 | 47 | ||
| – | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 | 47 | ||
| – | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 | 47 | ||
| – | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 | 47 | ||
| – | Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|V7AY23|V7AY23_PHAVU Phytochrome; Found in the gene: LotjaGi6g1v0210900 | 44 | ||
| – | Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|N0DK27|N0DK27_LOTJA Phytochrome E; Found in the gene: LotjaGi6g1v0210900 | 33 | ||
| – | Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|V7AY23|V7AY23_PHAVU Phytochrome; Found in the gene: LotjaGi6g1v0210900 | 44 | ||
| – | Phytochrome; TAIR: AT2G18790.1 phytochrome B; Swiss-Prot: sp|P42499|PHYB_SOYBN Phytochrome B; TrEMBL-Plants: tr|A1IIA2|A1IIA2_LOTJA Phytochrome; Found in the gene: LotjaGi6g1v0258900 | 49 | ||
| – | Kinase family protein; TAIR: AT3G06620.1 PAS domain-containing protein tyrosine kinase family protein; Swiss-Prot: sp|Q9FPR3|EDR1_ARATH Serine/threonine-protein kinase EDR1; TrEMBL-Plants: tr|G7IFW1|G7IFW1_MEDTR PAS domain tyrosine kinase family protein; Found in the gene: LotjaGi6g1v0259000 | 27 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 6.25 |