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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2295880 |
| Transcript ID | Lj4g3v2295880.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | phytochrome E, partial [Lotus japonicus] gi|477504399|dbj|BAN14709.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | – | – | |
| Pfam | 73 | 187 | 115 | 1.80E-38 | ||
| SUPERFAMILY | 78 | 189 | 112 | 2.44E-22 | ||
| PANTHER | 113 | 531 | 419 | 0 | – | |
| PANTHER | 113 | 531 | 419 | 0 | – | |
| PRINTS | 135 | 157 | 23 | 4.10E-103 | ||
| SUPERFAMILY | 200 | 386 | 187 | 1.21E-52 | ||
| SMART | 220 | 400 | 181 | 4.50E-22 | ||
| ProSiteProfiles | 220 | 380 | 161 | 66.11 | ||
| Pfam | 224 | 390 | 167 | 7.30E-32 | ||
| Gene3D | 226 | 365 | 140 | 3.00E-06 | ||
| PRINTS | 235 | 254 | 20 | 4.10E-103 | ||
| PRINTS | 320 | 341 | 22 | 4.10E-103 | ||
| SUPERFAMILY | 398 | 577 | 180 | 3.83E-56 | ||
| Pfam | 403 | 578 | 176 | 3.00E-57 | ||
| PRINTS | 420 | 440 | 21 | 4.10E-103 | ||
| PRINTS | 505 | 524 | 20 | 4.10E-103 | ||
| PRINTS | 538 | 556 | 19 | 4.10E-103 | ||
| ProSiteProfiles | 605 | 676 | 72 | 22.304 | ||
| PANTHER | 605 | 745 | 141 | 0 | – | |
| PANTHER | 605 | 745 | 141 | 0 | – | |
| SMART | 607 | 674 | 68 | 1.90E-05 | ||
| Pfam | 608 | 722 | 115 | 8.80E-24 | ||
| PRINTS | 608 | 624 | 17 | 4.10E-103 | ||
| Gene3D | 611 | 722 | 112 | 8.50E-16 | – | |
| SUPERFAMILY | 611 | 718 | 108 | 2.62E-14 | ||
| TIGRFAM | 612 | 726 | 115 | 6.20E-11 | ||
| CDD | 616 | 722 | 107 | 4.97E-07 | – | |
| PRINTS | 627 | 642 | 16 | 4.10E-103 | ||
| PRINTS | 700 | 717 | 18 | 4.10E-103 | ||
| PRINTS | 720 | 740 | 21 | 4.10E-103 | ||
| Gene3D | 723 | 854 | 132 | 7.00E-09 | – | |
| SMART | 737 | 806 | 70 | 0.081 | ||
| Pfam | 738 | 857 | 120 | 1.50E-21 | ||
| ProSiteProfiles | 738 | 783 | 46 | 14.707 | ||
| CDD | 749 | 857 | 109 | 8.28E-08 | – | |
| SUPERFAMILY | 752 | 854 | 103 | 5.93E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Detection of visible light | The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm. | ||
| Biological process | Protein-chromophore linkage | The covalent or noncovalent attachment of a chromophore to a protein. |
Expression pattern of Lj4g3v2295880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2295880.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.