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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0329700 |
| Transcript ID | LotjaGi2g1v0329700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rhamnogalacturonate lyase; TAIR: AT2G22620.1 Rhamnogalacturonate lyase family protein; Swiss-Prot: sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase; TrEMBL-Plants: tr|I1J4Y6|I1J4Y6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0329700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80515663..80521060) extracted from Lotus japonicus Gifu genome v1.2.
GATGAGTTACTAGCTAGCTATATAAGTCATGTGTACTTGGTTATTCTAGTTGATGAAAATTCAGATCATTCATTCTTCCA AAATCTATTTTCTCTCATTTCCTTCAGGTTTTAGGGGGTTGGAATTGGAGAGATGAGGAAATGGGATTTATTCCTGTGGT TGTTTAGAATGGCTCTACAGTTCTGCTTCTTGCTCGGTGCCTGTTCTGAGATTACCTCATTTAGCAGGTTCTCCCTACTC TCTTCAATGATCTGTTCTGTTTAGGATATAGAATTCTTACATTTGTTTTGCACTTATTTTTACAACTCTAATATTTTTTT AAATACCTTAACAGTATTTTCATATTTCATTCACTTATTCTACCACATACCTACAGGGAATATGTAAATAAAAAGAATAG AAATATAGAATGTACGTAGTTATGAGAAAAAAGAAGAGGAAAATAGTGAAACTAAATTTGTTGTTCCATTCTACCTCAAT AAAATATGTTTTAGGTGCTCAAAATTGTCTTTGGTAAATAGTTGCATTTCTCTCACAACAAATATCTTTTCGGGATTTGA ACTTGTGCTCTCCTCCTTATCGGAAGAGAGCTTCCTTACTACTAAACTAACAGCTTGTTTGTATTGTTTGAACTATTTAA TTCACCTTCAAATATTTTTCCAATTGAAATGACTAAATGCTTTGAACTTTCTTGTCCTTCAATGCTTCCACTTGCAGAAG AAGCTTGAGAGGGATCAGTAACTCAGAATCGATTTCTGCCTATTCTCCAGTCAACCTGAATACAGAAAATCCTCACCAGG TGATTCTAGTTTTTTCTTTCTAGAAAAGTCACTTCCTTCAGAAAAAATATGAATTGAAAAAGAATAAAAATAAAACCAAT TTGGCCTCATTTGTGTTTTTGTCTCTGATACATGGTTATTAAGCCTCAACAATTGAATTTGGTTTTCAGGTGGTGATTAA CAACAGTTTGGTGTCCATCACTTTATCAAGACCAGAGGGATATATCATTGGAATATCGTATGGTGGAATTGACAATTTAC TTAATACTCTAATTGACGTACAATATAGAGGGTATACCAACACTCTTCATATTAAATAGCATACAAATTGGAATATATAG CATGTCCTAACTTGATATTAATAGGTACATGGACGTTGTTTGGAACCAACCAGGAACACCTCCCCAATTTCAGAGGTATA ATTTATGTCCTCTCAATTACAATTAACAACATGCTTCTTCATTCATAGACTTCATGCATAATGCACTAATCAAGAGACTA ATTTATCATGGAAACTGTATTGCAGAATCCAAGGGACAAAATTCTCAGTCATAACAAAGGATGATGATATGGTGGAGATT TCATTTTTTAGCGAATGGACATCATCTATGGAAGGTTCAAGTGTCCCTATGAACATAGACCAAAGGTGGATTCCAAGTCT TAATTTTTTCATACAGATTGAGAACAATTAGTCTTGATTTGGAACTCTTACCAGTAGAAAGAAACTGATCAGCATTGTTT GATATATAAACTGTTTTTGCAGGTATATATTACGACGAGGGGATTCAGGGTTTTATTCATATGCAATATTTGAGCGATCT GAAGGATTACCTGCAGTGGTGGTAGATCAAACTAGGCTTGTCTTCAGGCTTAGAGAAGACATGTAAGTGGATAATGGTTT CAGTTAAAAAAGAATTAGTACTTTTCCTTTAAATCTAACCGTTTTGTGTATGTGCACCACAAAAACATAGAGTTAATTGC ACTTTTAGTCCCTTGCAATAACATATGTGAGTTTGGACTCTCATAATGTTTTTAGCGCTAACTACCCAGGTTCAACTATA TGGCTATATCAGATACTAGGCAAAGGATAATGCCCTCACTCAAAGATAGAAATGAAGGTCAACACCTGGCATATCCTGAA GCTGTTCTCCTAACCCATTCATCTATCCCACAATGTAGGGGAGAGGTATCTCTCTTTCTGCATATGCTGCTTGCTTGAAT TGACATGGATTCCCCTCTGTTTGGTTGTTTATAGTTGAATATCTTGTTTCTGTGAGGATACTCTCACAGTTTCTCGAACG TGATTAGTCTTGCCTGAAGGGTGCAGAAACACCCGTTTTTCTATAAAAAAAAGTGTGAATAACATGAATGGTTGTGTTGG ATTCAGGTGGATGACAAATACCAATACTCAAGTGAGAACCAAGACAACAATGTCCAAGGCTGGACTACCACAGATTCTGC ACCAACCGTGGGTTTCTGGATCATAACACCAAGTAATGAATTCCGCAATGGTGGGCCCATTAAACAAGATCTCACCTCTC ATGTTGGCCCTACTCTACTCTCCGTAAGTTCAACCTCTCAAATCAAGTGAATCCCTAAATTCGTACTGAAAATATAAAGT GTTGGGAGGTTTGTCCCAGAAAGAATGAAATGCCTTCAAAAGTTCATGAATGTGACAATTGTCGGTCTAGTTGGTCTCTC CATCACTTTTGGTCAACTATGAACTCTTGAGGTGAAGGAAGGACCAACTTGATCGACGATTGGCACATTCATGAACTTTT GAAGTTATTTTCTTCTTTCACGAATGAATCTAAGGATTTACTCAGTCAAATCTCTATAATTATGGGTTTCGGTCTTTCCC TAAGAACTTAATCAATATTAGACATGTATGAAACTGTAGTATCAAGTTACAAAGGTAATAATATCTACATAATGTGATTG ATAATTTTTTTTCTTTTAAATGTGTAGATGTTTACCAGCACCCACTATGCTGGCACAGATGCAGTCATGGCATTTAAAGA AGGGGAGACATTTAAAAAGGTTTTTGGCCCAGTTTTTGTCTACCTTAACAATGCATCAAGCAATAGTAAATCTTTATGGT CAGATGCTGCAAAAAAGGTCATCATCACATAACCATACTCACCTTGAACTTCTTATTACAAATTGTTAGAGTACTCAAGG TGTAACTTATCATTGTTCTTTAATCAATTAGCTATCCAATGAAGTTAAAAGCTGGCCTTATGATTTCCCTCGATCACAAG ATTTCTTTCCATCCAAACAGCGAGGACAAGTTACTGGACAGTTACAAGTAAAAGATGGGTACATACATGTTAATGTTTAG TGTACCTACAATTTATTGCTTTGATTACAGTGAATCACTTATATGGCAAGCTGAATTCTTTGCTTTGTCTTGTTCATCAG GGGAAAAACGTCTGTATATCCAAGCAATGCCTACATTGGTCTAGCTTTTCCCGGTGAAGCAGGATCTTGGCAGACAGAAA GCAAGGTACATTTGGGTCTTACACCTATGAGATTTTAGTTTCTTGAACTTTTGAAGGGGTAGTGATACATGAAGCTGAAA AGGGTTTGAAATAATATGCCATTCACAGAGTTATCAATTCTGGACTCGAACTGACGAAAATGGAAACTTCAAAATAGAAA ATATTGTCCCTGGGGACTACAACTTGTATGCATGGATCCCTGGCTTTATTGGAGATTACAAATATAATGATATAATCACC ATCGAATCAGGTAAATCTTAATAGTATGTTTGGATCAACTGTTTTTTCCTCACAATGAATTCTGACACTTATAAGCTACT CACATAAACTTTTCCCAAGAATTGATATTGCCTTTAGAATCATTATAGAAGAACTTTCAAACATAACATTAGACCCCAAA TTAGTTATAGCTTGCTGCACTTGACAATTACTTGTAATGTAATGTACTTGTAGGGCGTTCCATCGAATTGGGTACACTTG TATATAGGCCTCCAAGAAATGGTTATACTCTTTGGGAAATTGGCATCCCAGATCGTTCAGCTGCAGAATTCTTTGTACCA GACCCTAACCCTAGACTCATGAACAAGTTATACAAGAACGATCCCCATGACAAGTTAGCCAAAAACCACTGATTCAATCT TCAATTAATCTCCACAATCATTTCCCTTAACACTAACCAAGCAATTTCTATTGTGACAGGTTTAGGCAATACGGGTTGTG GGAACGTTACACTGATTTATACCCAGATCATGATCTAGTTTACACGGTTGGTGTTGACAATTATAAAAATCATTGGTTTT TTTCTCATGTTAACAGGTGAGTTTTGTAGAGAATTTCGTTGGTTCTTAAGCTATGATGGCTGGTTGTTTAATTCCTCTAA ACTGCACTGATATAGGAAGATAGGAAAAAACACATTCCAACCAACCACATGGGAGATTGTGTTTCAACTTCAAAATAACA CATTGAAAGGAAAGTACACACTACAATTGGCCCTGGCATCAGCCTCTAATGCTGAAGTGCAGGTACACCAATTCACTTCT TCCAAAAATGATCCTCTTTTTTAGCTATGACTAGTAGCTATCTTTGGATACCAGTTGTAACCCGCATTGAAAATGGAGGT CACCTCAAAACAAAATGTGAACTAAACTTTTCTTATGGATTGAGATAAAAGTCTGTTAACGTTGCACTCAACTGGTATCC AAACACACAATAGGTTGTGATCATTAACATTTTTCTGATGGATGAGATCAGGTTTGGTTCAATGGCTGGAATGCTGATTA TCCCTACTTCACAACAGGGGAAATAGGCAATGACAGTGCAATAGCAAGGCACGGCATTCATGGATTGCACAGGTTGTATA GCATAAATGTAGCAAGTGATCAATTGGTAACAGGAAAGAATACAATCTATCTGAGGCAGTCAATAGCTACAAGTCCTTTC CAAGGAGTTATGTATGATTATATCCGCTTAGAAAGTCCTCCAACTCCAGATACATGATTCTGTACATCATACACCGGAGG ACCACATACAGGCCTCGTCTCACACGATGATGACGAGACGAGGCCTATCAAAGGCATACATAAAATTTTGGCTATCATGA AGAATAAAACCATTCAGTTTAATTTTTCCAATTCTGATTTTTATGTTCATGTGTTAAGGATAAAGTTGATTCTTCCAATT AGTACTTACATAACCTTATGTTACCTATGGTGTCAGCTAAATAGTAGTAGTGATTAGAGTATATATCCGATGAGGATTTC AACTCAAGTATTAATTCACAGAATTTTATCTTGTTGAATCGAATTAATACTTGATAAAATTCTGTGAATTAATATGGTGG ATCATTAGTAAGCTCCAAAACTTAATATTCTGCAGCATATAAAAATATAATGGAGAACTCTCCACACATGACGAGTCTGA TAAGGCTCTTTGCTAAAAGGTTGCAACCTATGACATTATTTGCTATATATGCTTACCTCCAAGTAAATAAAACACTGGCA GCCCCAGTGGCTTCTCTGGTGCACCAACCATGATAAGTTTACCATGAGGCTTCAACAGACTAATCAAAGGCAAGAGAGAG TGTCAATGATACATACCATCAAAGGTTCCCATTACAGC
CDS sequence (LotjaGi2g1v0329700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAATGGGATTTATTCCTGTGGTTGTTTAGAATGGCTCTACAGTTCTGCTTCTTGCTCGGTGCCTGTTCTGAGAT TACCTCATTTAGCAGAAGAAGCTTGAGAGGGATCAGTAACTCAGAATCGATTTCTGCCTATTCTCCAGTCAACCTGAATA CAGAAAATCCTCACCAGGTGGTGATTAACAACAGTTTGGTGTCCATCACTTTATCAAGACCAGAGGGATATATCATTGGA ATATCGTATGGTGGAATTGACAATTTACTTAATACTCTAATTGACGTACAATATAGAGGGTACATGGACGTTGTTTGGAA CCAACCAGGAACACCTCCCCAATTTCAGAGAATCCAAGGGACAAAATTCTCAGTCATAACAAAGGATGATGATATGGTGG AGATTTCATTTTTTAGCGAATGGACATCATCTATGGAAGGTTCAAGTGTCCCTATGAACATAGACCAAAGGTATATATTA CGACGAGGGGATTCAGGGTTTTATTCATATGCAATATTTGAGCGATCTGAAGGATTACCTGCAGTGGTGGTAGATCAAAC TAGGCTTGTCTTCAGGCTTAGAGAAGACATGTTCAACTATATGGCTATATCAGATACTAGGCAAAGGATAATGCCCTCAC TCAAAGATAGAAATGAAGGTCAACACCTGGCATATCCTGAAGCTGTTCTCCTAACCCATTCATCTATCCCACAATGTAGG GGAGAGGTGGATGACAAATACCAATACTCAAGTGAGAACCAAGACAACAATGTCCAAGGCTGGACTACCACAGATTCTGC ACCAACCGTGGGTTTCTGGATCATAACACCAAGTAATGAATTCCGCAATGGTGGGCCCATTAAACAAGATCTCACCTCTC ATGTTGGCCCTACTCTACTCTCCATGTTTACCAGCACCCACTATGCTGGCACAGATGCAGTCATGGCATTTAAAGAAGGG GAGACATTTAAAAAGGTTTTTGGCCCAGTTTTTGTCTACCTTAACAATGCATCAAGCAATAGTAAATCTTTATGGTCAGA TGCTGCAAAAAAGCTATCCAATGAAGTTAAAAGCTGGCCTTATGATTTCCCTCGATCACAAGATTTCTTTCCATCCAAAC AGCGAGGACAAGTTACTGGACAGTTACAAGTAAAAGATGGGGGAAAAACGTCTGTATATCCAAGCAATGCCTACATTGGT CTAGCTTTTCCCGGTGAAGCAGGATCTTGGCAGACAGAAAGCAAGAGTTATCAATTCTGGACTCGAACTGACGAAAATGG AAACTTCAAAATAGAAAATATTGTCCCTGGGGACTACAACTTGTATGCATGGATCCCTGGCTTTATTGGAGATTACAAAT ATAATGATATAATCACCATCGAATCAGGGCGTTCCATCGAATTGGGTACACTTGTATATAGGCCTCCAAGAAATGGTTAT ACTCTTTGGGAAATTGGCATCCCAGATCGTTCAGCTGCAGAATTCTTTGTACCAGACCCTAACCCTAGACTCATGAACAA GTTATACAAGAACGATCCCCATGACAAGTTTAGGCAATACGGGTTGTGGGAACGTTACACTGATTTATACCCAGATCATG ATCTAGTTTACACGGTTGGTGTTGACAATTATAAAAATCATTGGTTTTTTTCTCATGTTAACAGGAAGATAGGAAAAAAC ACATTCCAACCAACCACATGGGAGATTGTGTTTCAACTTCAAAATAACACATTGAAAGGAAAGTACACACTACAATTGGC CCTGGCATCAGCCTCTAATGCTGAAGTGCAGGTTTGGTTCAATGGCTGGAATGCTGATTATCCCTACTTCACAACAGGGG AAATAGGCAATGACAGTGCAATAGCAAGGCACGGCATTCATGGATTGCACAGGTTGTATAGCATAAATGTAGCAAGTGAT CAATTGGTAACAGGAAAGAATACAATCTATCTGAGGCAGTCAATAGCTACAAGTCCTTTCCAAGGAGTTATGTATGATTA TATCCGCTTAGAAAGTCCTCCAACTCCAGATACATGA
Protein sequence (LotjaGi2g1v0329700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKWDLFLWLFRMALQFCFLLGACSEITSFSRRSLRGISNSESISAYSPVNLNTENPHQVVINNSLVSITLSRPEGYIIG ISYGGIDNLLNTLIDVQYRGYMDVVWNQPGTPPQFQRIQGTKFSVITKDDDMVEISFFSEWTSSMEGSSVPMNIDQRYIL RRGDSGFYSYAIFERSEGLPAVVVDQTRLVFRLREDMFNYMAISDTRQRIMPSLKDRNEGQHLAYPEAVLLTHSSIPQCR GEVDDKYQYSSENQDNNVQGWTTTDSAPTVGFWIITPSNEFRNGGPIKQDLTSHVGPTLLSMFTSTHYAGTDAVMAFKEG ETFKKVFGPVFVYLNNASSNSKSLWSDAAKKLSNEVKSWPYDFPRSQDFFPSKQRGQVTGQLQVKDGGKTSVYPSNAYIG LAFPGEAGSWQTESKSYQFWTRTDENGNFKIENIVPGDYNLYAWIPGFIGDYKYNDIITIESGRSIELGTLVYRPPRNGY TLWEIGIPDRSAAEFFVPDPNPRLMNKLYKNDPHDKFRQYGLWERYTDLYPDHDLVYTVGVDNYKNHWFFSHVNRKIGKN TFQPTTWEIVFQLQNNTLKGKYTLQLALASASNAEVQVWFNGWNADYPYFTTGEIGNDSAIARHGIHGLHRLYSINVASD QLVTGKNTIYLRQSIATSPFQGVMYDYIRLESPPTPDT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| ProSiteProfiles | 1 | 24 | 24 | 6.0 | – | |
| Phobius | 6 | 21 | 16 | - | – | |
| Phobius | 22 | 25 | 4 | - | – | |
| Phobius | 26 | 678 | 653 | - | – | |
| Pfam | 41 | 243 | 203 | 9.6E-71 | ||
| PANTHER | 46 | 674 | 629 | 0.0 | – | |
| PANTHER | 46 | 674 | 629 | 0.0 | – | |
| SUPERFAMILY | 54 | 343 | 290 | 1.32E-10 | ||
| CDD | 59 | 343 | 285 | 8.33194E-71 | – | |
| SUPERFAMILY | 370 | 469 | 100 | 4.71E-10 | ||
| CDD | 374 | 471 | 98 | 7.20009E-33 | ||
| Pfam | 394 | 467 | 74 | 8.7E-25 | ||
| SUPERFAMILY | 478 | 671 | 194 | 1.32E-44 | ||
| Pfam | 481 | 670 | 190 | 9.5E-51 | ||
| CDD | 483 | 671 | 189 | 1.78976E-49 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi2g1v0329700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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